Wall clock time and date at job start Fri Apr 10 2020 17:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.47136 * 2 1 4 4 C 1.42893 * 113.99911 * 183.76420 * 3 2 1 5 5 H 1.09006 * 109.47463 * 357.85102 * 4 3 2 6 6 C 1.50698 * 109.47411 * 237.84245 * 4 3 2 7 7 O 1.21282 * 120.00140 * 353.01949 * 6 4 3 8 8 N 1.34786 * 119.99996 * 173.01539 * 6 4 3 9 9 C 1.46502 * 119.99745 * 174.98398 * 8 6 4 10 10 C 1.52999 * 109.46660 * 179.97438 * 9 8 6 11 11 N 1.46503 * 109.47049 * 180.02562 * 10 9 8 12 12 C 1.46500 * 120.00050 * 89.99829 * 11 10 9 13 13 C 1.36943 * 119.99650 * 270.00289 * 11 10 9 14 14 H 1.07994 * 120.00085 * 334.24998 * 13 11 10 15 15 C 1.38807 * 119.99645 * 154.25242 * 13 11 10 16 16 N 1.31616 * 120.00460 * 2.33482 * 15 13 11 17 17 Si 1.86807 * 119.99918 * 182.33422 * 15 13 11 18 18 H 1.48499 * 109.46738 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46984 * 120.00091 * 17 15 13 20 20 H 1.48498 * 109.46994 * 240.00202 * 17 15 13 21 21 C 1.53007 * 109.46710 * 117.84405 * 4 3 2 22 22 H 1.08999 * 110.43429 * 174.85220 * 21 4 3 23 23 C 1.54806 * 110.48710 * 52.16761 * 21 4 3 24 24 C 1.54991 * 102.09300 * 220.44186 * 23 21 4 25 25 O 1.44373 * 103.48996 * 37.02247 * 24 23 21 26 26 C 1.43738 * 106.97967 * 319.94096 * 25 24 23 27 27 H 1.08993 * 109.46980 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46832 * 299.99995 * 1 2 3 29 29 H 1.08993 * 109.47070 * 59.99701 * 1 2 3 30 30 H 1.08996 * 109.47273 * 240.00237 * 2 1 3 31 31 H 1.09001 * 109.47010 * 120.00005 * 2 1 3 32 32 H 0.96998 * 119.99687 * 354.98079 * 8 6 4 33 33 H 1.09001 * 109.47265 * 59.99999 * 9 8 6 34 34 H 1.08991 * 109.46841 * 299.99641 * 9 8 6 35 35 H 1.09001 * 109.47115 * 60.00112 * 10 9 8 36 36 H 1.09003 * 109.47444 * 300.00207 * 10 9 8 37 37 H 1.09004 * 109.46953 * 265.27035 * 12 11 10 38 38 H 1.08991 * 109.47026 * 25.27495 * 12 11 10 39 39 H 1.09000 * 109.46403 * 145.27515 * 12 11 10 40 40 H 0.97002 * 120.00764 * 180.02562 * 16 15 13 41 41 H 1.09005 * 110.91184 * 338.64312 * 23 21 4 42 42 H 1.09005 * 110.90853 * 102.24590 * 23 21 4 43 43 H 1.09000 * 110.62254 * 278.52120 * 24 23 21 44 44 H 1.09002 * 110.75416 * 155.59236 * 24 23 21 45 45 H 1.08999 * 109.88273 * 267.09092 * 26 25 24 46 46 H 1.08994 * 110.00994 * 146.00565 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4282 1.4611 -0.0857 5 1 3.8724 0.4657 -0.0965 6 6 3.9435 2.2283 1.1046 7 8 3.1639 2.7460 1.8761 8 7 5.2707 2.3393 1.3117 9 6 5.7741 3.1755 2.4043 10 6 7.3033 3.1278 2.4199 11 7 7.8067 3.9635 3.5128 12 6 8.0193 3.3828 4.8409 13 6 8.0786 5.2875 3.2929 14 1 8.3294 5.6296 2.2997 15 6 8.0318 6.1899 4.3466 16 7 7.7713 5.7660 5.5651 17 14 8.3384 8.0061 4.0352 18 1 8.6063 8.2223 2.5907 19 1 7.1411 8.7865 4.4384 20 1 9.5111 8.4533 4.8289 21 6 3.8040 2.2010 -1.3711 22 1 4.8790 2.3769 -1.4086 23 6 3.0296 3.5376 -1.4730 24 6 2.6574 3.5834 -2.9769 25 8 2.3697 2.2048 -3.2947 26 6 3.3445 1.4032 -2.6068 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8924 1.8654 0.7375 33 1 5.3896 2.8030 3.3538 34 1 5.4438 4.2036 2.2567 35 1 7.6881 3.5000 1.4704 36 1 7.6333 2.0995 2.5676 37 1 7.1372 3.5544 5.4579 38 1 8.1929 2.3110 4.7452 39 1 8.8859 3.8510 5.3076 40 1 7.7383 6.3966 6.3014 41 1 2.1346 3.5171 -0.8512 42 1 3.6687 4.3789 -1.2047 43 1 3.4971 3.9467 -3.5693 44 1 1.7775 4.2062 -3.1382 45 1 4.1949 1.2111 -3.2611 46 1 2.8976 0.4597 -2.2936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690966671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:35 Heat of formation + Delta-G solvation = -104.841652 kcal Electronic energy + Delta-G solvation = -25502.523679 eV Core-core repulsion = 21814.316523 eV Total energy + Delta-G solvation = -3688.207155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.49140 -38.87489 -37.58470 -36.00006 -34.18709 -33.29891 -31.33400 -31.05104 -29.75152 -28.43838 -26.38625 -25.85045 -23.34764 -22.99285 -22.59006 -21.23921 -20.65338 -20.01560 -17.66827 -17.07423 -16.78697 -16.35732 -16.15177 -15.58686 -15.35013 -15.07984 -14.76942 -14.69665 -14.33467 -13.72820 -13.51069 -13.20697 -13.09156 -12.93650 -12.51285 -12.35424 -12.30896 -12.08933 -11.78345 -11.60376 -11.45772 -11.20351 -11.12406 -10.95167 -10.87878 -10.83331 -10.61705 -10.26904 -10.14367 -10.03755 -9.92829 -9.89421 -9.18987 -8.67257 -8.54911 -6.82135 -5.78227 -3.27214 2.75860 3.04198 3.36084 3.42913 3.44735 3.67142 3.82509 4.26474 4.36942 4.46345 4.66133 4.71542 4.84480 4.94386 5.02184 5.07118 5.12151 5.17968 5.25972 5.37679 5.45154 5.48447 5.55412 5.60359 5.63707 5.75055 5.80366 5.85083 5.93132 5.97279 6.13520 6.24191 6.65086 6.66012 6.69685 6.73768 6.88270 6.99736 7.42738 7.72543 7.77273 7.81125 8.36573 8.48060 9.20039 9.79977 10.29312 11.26499 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.003308 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.631447 B = 8462.142285 C = 9143.887555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.347 6.347 4 C 0.082 3.918 5 H 0.087 0.913 6 C 0.497 3.503 7 O -0.519 6.519 8 N -0.724 5.724 9 C 0.096 3.904 10 C 0.145 3.855 11 N -0.599 5.599 12 C 0.165 3.835 13 C -0.262 4.262 14 H 0.070 0.930 15 C 0.008 3.992 16 N -0.906 5.906 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.289 1.289 21 C -0.130 4.130 22 H 0.099 0.901 23 C -0.147 4.147 24 C 0.049 3.951 25 O -0.375 6.375 26 C 0.058 3.942 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.393 0.607 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.026 0.974 38 H -0.007 1.007 39 H 0.054 0.946 40 H 0.253 0.747 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.432 -12.700 -16.024 22.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.265 6.265 4 C 0.020 3.980 5 H 0.105 0.895 6 C 0.280 3.720 7 O -0.394 6.394 8 N -0.378 5.378 9 C -0.030 4.030 10 C 0.017 3.983 11 N -0.322 5.322 12 C 0.020 3.980 13 C -0.391 4.391 14 H 0.088 0.912 15 C -0.191 4.191 16 N -0.550 5.550 17 Si 0.735 3.265 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.216 1.216 21 C -0.149 4.149 22 H 0.117 0.883 23 C -0.184 4.184 24 C -0.027 4.027 25 O -0.294 6.294 26 C -0.019 4.019 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.226 0.774 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.011 0.989 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.079 0.921 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.282 -12.113 -15.379 21.666 hybrid contribution 0.747 0.664 -0.083 1.003 sum -8.535 -11.449 -15.462 21.048 Atomic orbital electron populations 1.21708 0.93403 1.02101 1.03481 1.22669 0.96194 0.83672 0.99707 1.88060 1.18027 1.26105 1.94275 1.21882 0.84110 0.99086 0.92922 0.89534 1.20691 0.82965 0.81794 0.86511 1.90730 1.55872 1.46611 1.46172 1.46191 1.06134 1.50491 1.34966 1.22526 0.97969 0.94321 0.88152 1.20986 0.89680 0.94536 0.93127 1.43887 1.73747 1.07501 1.07037 1.20910 1.00809 0.90613 0.85649 1.19249 1.41382 0.83210 0.95265 0.91205 1.25201 0.99749 0.98210 0.95929 1.70077 1.53055 1.33004 0.98877 0.86177 0.77397 0.85284 0.77667 1.20265 1.21449 1.21609 1.22916 1.01441 0.96705 0.93849 0.88319 1.23130 1.01908 0.96113 0.97282 1.23543 1.01007 0.83824 0.94329 1.88847 1.52958 1.16976 1.70585 1.23126 0.92179 0.94932 0.91671 0.91191 0.91597 0.91654 0.93374 0.93324 0.77380 0.92214 0.91391 0.93392 0.94072 0.95539 0.98868 0.92720 0.93610 0.88702 0.90054 0.92298 0.88950 0.92118 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.05 0.53 6.17 37.16 0.23 0.76 16 3 O -0.35 -4.54 8.06 -55.04 -0.44 -4.99 16 4 C 0.08 0.94 2.21 -27.88 -0.06 0.88 16 5 H 0.09 0.73 7.60 -51.93 -0.39 0.34 16 6 C 0.50 7.77 6.74 -10.98 -0.07 7.70 16 7 O -0.52 -10.84 16.52 -14.26 -0.24 -11.08 16 8 N -0.72 -10.43 5.54 -60.29 -0.33 -10.76 16 9 C 0.10 1.83 6.00 -4.04 -0.02 1.80 16 10 C 0.15 2.80 5.82 -4.04 -0.02 2.77 16 11 N -0.60 -14.82 2.93 -181.12 -0.53 -15.36 16 12 C 0.16 4.06 8.99 59.85 0.54 4.59 16 13 C -0.26 -7.09 9.66 -15.06 -0.15 -7.24 16 14 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 15 C 0.01 0.22 5.36 -17.43 -0.09 0.12 16 16 N -0.91 -26.31 10.20 55.49 0.57 -25.74 16 17 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 C -0.13 -1.29 2.90 -89.09 -0.26 -1.55 16 22 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 23 C -0.15 -1.69 6.17 -24.73 -0.15 -1.84 16 24 C 0.05 0.50 7.72 38.21 0.29 0.79 16 25 O -0.37 -4.33 11.52 -35.23 -0.41 -4.74 16 26 C 0.06 0.53 7.16 37.73 0.27 0.80 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.38 6.70 -51.93 -0.35 0.03 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.39 4.15 8.48 -40.82 -0.35 3.80 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.05 0.87 8.04 -51.93 -0.42 0.45 16 36 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 37 H 0.03 0.71 7.44 -51.93 -0.39 0.32 16 38 H -0.01 -0.15 7.84 -51.93 -0.41 -0.56 16 39 H 0.05 1.45 7.06 -51.93 -0.37 1.08 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.09 1.33 7.01 -51.93 -0.36 0.96 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.67 5.96 -51.93 -0.31 0.36 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -33.85 370.50 -7.89 -41.74 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.94 Total: -0.02 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 0.88 Total: 8.64 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.30 Total: -51.86 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -1.08 Total: -20.80 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.85 -7.89 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690966671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.103 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds