Wall clock time and date at job start Fri Apr 10 2020 17:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.47136 * 2 1 4 4 C 1.42893 * 113.99911 * 183.76420 * 3 2 1 5 5 H 1.09006 * 109.47463 * 357.85102 * 4 3 2 6 6 C 1.50698 * 109.47411 * 237.84245 * 4 3 2 7 7 O 1.21282 * 120.00140 * 353.01949 * 6 4 3 8 8 N 1.34786 * 119.99996 * 173.01539 * 6 4 3 9 9 C 1.46502 * 119.99745 * 174.98398 * 8 6 4 10 10 C 1.52999 * 109.46660 * 179.97438 * 9 8 6 11 11 N 1.46503 * 109.47049 * 180.02562 * 10 9 8 12 12 C 1.46500 * 120.00050 * 89.99829 * 11 10 9 13 13 C 1.36943 * 119.99650 * 270.00289 * 11 10 9 14 14 H 1.07994 * 120.00085 * 334.24998 * 13 11 10 15 15 C 1.38807 * 119.99645 * 154.25242 * 13 11 10 16 16 N 1.31616 * 120.00460 * 2.33482 * 15 13 11 17 17 Si 1.86807 * 119.99918 * 182.33422 * 15 13 11 18 18 H 1.48499 * 109.46738 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46984 * 120.00091 * 17 15 13 20 20 H 1.48498 * 109.46994 * 240.00202 * 17 15 13 21 21 C 1.53007 * 109.46710 * 117.84405 * 4 3 2 22 22 H 1.08999 * 110.43429 * 174.85220 * 21 4 3 23 23 C 1.54806 * 110.48710 * 52.16761 * 21 4 3 24 24 C 1.54991 * 102.09300 * 220.44186 * 23 21 4 25 25 O 1.44373 * 103.48996 * 37.02247 * 24 23 21 26 26 C 1.43738 * 106.97967 * 319.94096 * 25 24 23 27 27 H 1.08993 * 109.46980 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46832 * 299.99995 * 1 2 3 29 29 H 1.08993 * 109.47070 * 59.99701 * 1 2 3 30 30 H 1.08996 * 109.47273 * 240.00237 * 2 1 3 31 31 H 1.09001 * 109.47010 * 120.00005 * 2 1 3 32 32 H 0.96998 * 119.99687 * 354.98079 * 8 6 4 33 33 H 1.09001 * 109.47265 * 59.99999 * 9 8 6 34 34 H 1.08991 * 109.46841 * 299.99641 * 9 8 6 35 35 H 1.09001 * 109.47115 * 60.00112 * 10 9 8 36 36 H 1.09003 * 109.47444 * 300.00207 * 10 9 8 37 37 H 1.09004 * 109.46953 * 265.27035 * 12 11 10 38 38 H 1.08991 * 109.47026 * 25.27495 * 12 11 10 39 39 H 1.09000 * 109.46403 * 145.27515 * 12 11 10 40 40 H 0.97002 * 120.00764 * 180.02562 * 16 15 13 41 41 H 1.09005 * 110.91184 * 338.64312 * 23 21 4 42 42 H 1.09005 * 110.90853 * 102.24590 * 23 21 4 43 43 H 1.09000 * 110.62254 * 278.52120 * 24 23 21 44 44 H 1.09002 * 110.75416 * 155.59236 * 24 23 21 45 45 H 1.08999 * 109.88273 * 267.09092 * 26 25 24 46 46 H 1.08994 * 110.00994 * 146.00565 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4282 1.4611 -0.0857 5 1 3.8724 0.4657 -0.0965 6 6 3.9435 2.2283 1.1046 7 8 3.1639 2.7460 1.8761 8 7 5.2707 2.3393 1.3117 9 6 5.7741 3.1755 2.4043 10 6 7.3033 3.1278 2.4199 11 7 7.8067 3.9635 3.5128 12 6 8.0193 3.3828 4.8409 13 6 8.0786 5.2875 3.2929 14 1 8.3294 5.6296 2.2997 15 6 8.0318 6.1899 4.3466 16 7 7.7713 5.7660 5.5651 17 14 8.3384 8.0061 4.0352 18 1 8.6063 8.2223 2.5907 19 1 7.1411 8.7865 4.4384 20 1 9.5111 8.4533 4.8289 21 6 3.8040 2.2010 -1.3711 22 1 4.8790 2.3769 -1.4086 23 6 3.0296 3.5376 -1.4730 24 6 2.6574 3.5834 -2.9769 25 8 2.3697 2.2048 -3.2947 26 6 3.3445 1.4032 -2.6068 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8924 1.8654 0.7375 33 1 5.3896 2.8030 3.3538 34 1 5.4438 4.2036 2.2567 35 1 7.6881 3.5000 1.4704 36 1 7.6333 2.0995 2.5676 37 1 7.1372 3.5544 5.4579 38 1 8.1929 2.3110 4.7452 39 1 8.8859 3.8510 5.3076 40 1 7.7383 6.3966 6.3014 41 1 2.1346 3.5171 -0.8512 42 1 3.6687 4.3789 -1.2047 43 1 3.4971 3.9467 -3.5693 44 1 1.7775 4.2062 -3.1382 45 1 4.1949 1.2111 -3.2611 46 1 2.8976 0.4597 -2.2936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690966671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:34 Heat of formation + Delta-G solvation = -128.928907 kcal Electronic energy + Delta-G solvation = -25503.568180 eV Core-core repulsion = 21814.316523 eV Total energy + Delta-G solvation = -3689.251657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49943 -39.94575 -38.55443 -37.76243 -35.74376 -34.22896 -33.21357 -31.83196 -30.66768 -29.87722 -27.98260 -27.41291 -24.85664 -23.95008 -23.35315 -22.38878 -22.26215 -21.14647 -18.91066 -18.61427 -17.99827 -17.32487 -17.02881 -16.87280 -16.60678 -16.28903 -16.15565 -15.83372 -15.48202 -15.33440 -14.84708 -14.70764 -14.21206 -14.10527 -13.91777 -13.71693 -13.21707 -13.06390 -12.92471 -12.85370 -12.64064 -12.57034 -12.50790 -12.45235 -12.25898 -12.05565 -12.05005 -11.96032 -11.74110 -11.66790 -11.14624 -10.70658 -10.66093 -10.25687 -10.08936 -8.83627 -7.87196 -5.37825 1.44236 1.46985 1.54350 1.56078 1.93200 2.48624 2.79110 3.01785 3.30175 3.41482 3.56228 3.67453 3.88560 3.94317 4.10100 4.16650 4.23973 4.24758 4.30189 4.34023 4.37824 4.45416 4.50763 4.66640 4.76606 4.80851 4.85235 4.86278 4.86662 4.98282 5.02923 5.06973 5.14960 5.21991 5.26077 5.37746 5.45939 5.63109 5.76283 5.92531 6.10909 6.32199 6.62081 7.13350 7.28306 7.82835 8.26175 9.16650 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.003308 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.631447 B = 8462.142285 C = 9143.887555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.376 6.376 4 C 0.089 3.911 5 H 0.128 0.872 6 C 0.494 3.506 7 O -0.580 6.580 8 N -0.705 5.705 9 C 0.117 3.883 10 C 0.148 3.852 11 N -0.618 5.618 12 C 0.177 3.823 13 C -0.266 4.266 14 H 0.079 0.921 15 C -0.052 4.052 16 N -0.939 5.939 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.297 1.297 20 H -0.289 1.289 21 C -0.125 4.125 22 H 0.122 0.878 23 C -0.152 4.152 24 C 0.053 3.947 25 O -0.396 6.396 26 C 0.058 3.942 27 H 0.095 0.905 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.418 0.582 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.068 0.932 36 H 0.074 0.926 37 H -0.006 1.006 38 H 0.031 0.969 39 H 0.027 0.973 40 H 0.247 0.753 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 -14.510 -18.981 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.295 6.295 4 C 0.028 3.972 5 H 0.145 0.855 6 C 0.280 3.720 7 O -0.459 6.459 8 N -0.360 5.360 9 C -0.010 4.010 10 C 0.021 3.979 11 N -0.341 5.341 12 C 0.033 3.967 13 C -0.396 4.396 14 H 0.096 0.904 15 C -0.247 4.247 16 N -0.586 5.586 17 Si 0.795 3.205 18 H -0.185 1.185 19 H -0.224 1.224 20 H -0.216 1.216 21 C -0.144 4.144 22 H 0.140 0.860 23 C -0.190 4.190 24 C -0.023 4.023 25 O -0.316 6.316 26 C -0.018 4.018 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.255 0.745 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.012 0.988 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.183 -13.973 -18.411 24.519 hybrid contribution 0.368 1.144 0.803 1.445 sum -7.815 -12.829 -17.608 23.145 Atomic orbital electron populations 1.21732 0.93246 1.03381 1.02221 1.22914 0.96499 0.82534 1.01091 1.88062 1.18882 1.28230 1.94285 1.21945 0.83825 1.00379 0.91073 0.85463 1.21604 0.82487 0.80925 0.86962 1.90709 1.57395 1.49216 1.48593 1.45848 1.06556 1.49644 1.33936 1.21910 0.97951 0.92819 0.88337 1.21137 0.89051 0.95484 0.92189 1.44135 1.74443 1.07520 1.08023 1.20630 0.98158 0.92435 0.85514 1.19637 1.40121 0.84448 0.95375 0.90353 1.25970 1.00601 1.02191 0.95916 1.70262 1.54952 1.33820 0.99521 0.85195 0.76591 0.80430 0.78241 1.18517 1.22437 1.21585 1.22984 1.02459 0.95539 0.93457 0.85997 1.23072 1.00730 0.97179 0.97995 1.23570 1.01841 0.83630 0.93240 1.88823 1.54165 1.17614 1.70977 1.23276 0.92695 0.94582 0.91273 0.88625 0.93584 0.92170 0.90548 0.93150 0.74458 0.95260 0.95208 0.91351 0.90748 0.98787 0.95103 0.95392 0.94322 0.91983 0.90774 0.90386 0.88842 0.89479 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 10.28 71.98 0.74 -1.77 16 2 C 0.05 0.80 6.17 71.98 0.44 1.25 16 3 O -0.38 -9.48 8.06 -130.04 -1.05 -10.53 16 4 C 0.09 1.85 2.21 29.85 0.07 1.91 16 5 H 0.13 1.59 7.60 -2.38 -0.02 1.57 16 6 C 0.49 15.08 6.74 87.65 0.59 15.67 16 7 O -0.58 -25.08 16.52 15.91 0.26 -24.81 16 8 N -0.70 -18.99 5.54 -463.06 -2.56 -21.55 16 9 C 0.12 4.43 6.00 86.38 0.52 4.95 16 10 C 0.15 5.38 5.82 86.38 0.50 5.88 16 11 N -0.62 -30.24 2.93 -726.94 -2.13 -32.37 16 12 C 0.18 8.80 8.99 127.77 1.15 9.94 16 13 C -0.27 -14.33 9.66 84.03 0.81 -13.51 16 14 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 15 C -0.05 -2.91 5.36 84.86 0.45 -2.46 16 16 N -0.94 -56.19 10.20 21.65 0.22 -55.97 16 17 Si 0.97 45.19 29.55 68.60 2.03 47.21 16 18 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 21 C -0.13 -2.13 2.90 -9.80 -0.03 -2.16 16 22 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 23 C -0.15 -3.39 6.17 31.89 0.20 -3.19 16 24 C 0.05 0.98 7.72 72.66 0.56 1.55 16 25 O -0.40 -8.21 11.52 -148.98 -1.72 -9.92 16 26 C 0.06 0.84 7.16 72.35 0.52 1.36 16 27 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 0.91 6.70 -2.39 -0.02 0.89 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.42 7.17 8.48 -92.71 -0.79 6.39 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 2.23 8.04 -2.39 -0.02 2.22 16 36 H 0.07 2.24 7.86 -2.39 -0.02 2.22 16 37 H -0.01 -0.35 7.44 -2.38 -0.02 -0.37 16 38 H 0.03 1.26 7.84 -2.39 -0.02 1.25 16 39 H 0.03 1.50 7.06 -2.39 -0.02 1.48 16 40 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.06 1.80 7.01 -2.38 -0.02 1.78 16 42 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.09 1.12 5.96 -2.39 -0.01 1.11 16 Total: -1.00 -77.70 370.50 1.75 -75.95 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.17 Total: 12.59 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 6.52 Total: 19.41 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -4.47 Total: -109.89 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -2.50 Total: -45.27 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -77.70 1.75 -75.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690966671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.980 kcal (2) G-P(sol) polarization free energy of solvation -77.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds