Wall clock time and date at job start Fri Apr 10 2020 17:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46977 * 2 1 4 4 O 1.42896 * 109.47228 * 119.99844 * 2 1 3 5 5 C 1.42895 * 114.00187 * 269.99946 * 4 2 1 6 6 C 1.53004 * 109.47150 * 179.97438 * 5 4 2 7 7 H 1.08999 * 110.27244 * 54.30027 * 6 5 4 8 8 C 1.54947 * 110.30800 * 176.39200 * 6 5 4 9 9 C 1.55419 * 100.89415 * 155.28897 * 8 6 5 10 10 C 1.54381 * 102.30449 * 325.98950 * 9 8 6 11 11 O 1.43239 * 107.59029 * 21.28655 * 10 9 8 12 12 C 1.50697 * 109.46889 * 240.00111 * 2 1 3 13 13 O 1.21287 * 119.99585 * 244.99867 * 12 2 1 14 14 N 1.34773 * 120.00626 * 65.00171 * 12 2 1 15 15 C 1.46499 * 120.00611 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.47382 * 179.97438 * 15 14 12 17 17 N 1.46499 * 109.47165 * 179.97438 * 16 15 14 18 18 C 1.46496 * 120.00418 * 270.00189 * 17 16 15 19 19 C 1.36941 * 119.99621 * 89.99908 * 17 16 15 20 20 H 1.08004 * 119.99970 * 22.35069 * 19 17 16 21 21 C 1.38808 * 120.00012 * 202.34514 * 19 17 16 22 22 N 1.31624 * 120.00013 * 11.34374 * 21 19 17 23 23 Si 1.86800 * 120.00070 * 191.35084 * 21 19 17 24 24 H 1.48495 * 109.47256 * 59.99930 * 23 21 19 25 25 H 1.48495 * 109.46930 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46967 * 299.99642 * 23 21 19 27 27 H 1.08997 * 109.46625 * 299.99763 * 1 2 3 28 28 H 1.08997 * 109.46914 * 60.00257 * 1 2 3 29 29 H 1.08997 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47356 * 300.00114 * 5 4 2 31 31 H 1.09004 * 109.47195 * 59.99941 * 5 4 2 32 32 H 1.09006 * 111.12483 * 273.27828 * 8 6 5 33 33 H 1.09002 * 111.12832 * 37.44136 * 8 6 5 34 34 H 1.08996 * 110.88066 * 207.75259 * 9 8 6 35 35 H 1.08997 * 110.93047 * 84.25011 * 9 8 6 36 36 H 1.09001 * 109.83231 * 261.76734 * 10 9 8 37 37 H 1.09001 * 109.90138 * 140.83986 * 10 9 8 38 38 H 0.97005 * 119.99479 * 359.97438 * 14 12 2 39 39 H 1.08997 * 109.47143 * 299.99830 * 15 14 12 40 40 H 1.08997 * 109.47015 * 59.99534 * 15 14 12 41 41 H 1.08997 * 109.47076 * 300.00157 * 16 15 14 42 42 H 1.09001 * 109.46937 * 59.99491 * 16 15 14 43 43 H 1.08999 * 109.46929 * 94.20661 * 18 17 16 44 44 H 1.08993 * 109.47248 * 214.21503 * 18 17 16 45 45 H 1.09010 * 109.46795 * 334.21244 * 18 17 16 46 46 H 0.96998 * 119.99903 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2002 0.1829 2.2940 6 6 2.7080 -0.6408 3.4792 7 1 3.6005 -1.1989 3.1963 8 6 3.0111 0.2830 4.6856 9 6 2.8595 -0.7164 5.8662 10 6 1.7356 -1.6489 5.3656 11 8 1.6840 -1.5373 3.9385 12 6 2.0323 -0.7104 -1.2305 13 8 2.6530 -1.7467 -1.1214 14 7 1.7920 -0.1942 -2.4520 15 6 2.2807 -0.8845 -3.6482 16 6 1.8753 -0.0947 -4.8943 17 7 2.3646 -0.7848 -6.0904 18 6 3.6926 -0.4727 -6.6244 19 6 1.5806 -1.7216 -6.7092 20 1 0.5099 -1.7081 -6.5680 21 6 2.1619 -2.6883 -7.5181 22 7 3.4683 -2.8486 -7.5170 23 14 1.0901 -3.7616 -8.6084 24 1 0.3360 -2.9051 -9.5585 25 1 1.9470 -4.7071 -9.3680 26 1 0.1355 -4.5257 -7.7657 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.9320 0.9514 2.0450 31 1 1.2539 0.6547 2.5588 32 1 4.0252 0.6791 4.6320 33 1 2.2801 1.0883 4.7573 34 1 2.5576 -0.1991 6.7768 35 1 3.7829 -1.2730 6.0262 36 1 0.7819 -1.3423 5.7953 37 1 1.9544 -2.6786 5.6482 38 1 1.2953 0.6344 -2.5392 39 1 3.3670 -0.9623 -3.6044 40 1 1.8465 -1.8832 -3.6942 41 1 0.7890 -0.0173 -4.9379 42 1 2.3092 0.9042 -4.8484 43 1 4.4206 -1.1774 -6.2225 44 1 3.6743 -0.5494 -7.7115 45 1 3.9710 0.5411 -6.3363 46 1 3.8745 -3.5244 -8.0820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691002751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:52 Heat of formation + Delta-G solvation = -106.880617 kcal Electronic energy + Delta-G solvation = -24423.368573 eV Core-core repulsion = 20735.073002 eV Total energy + Delta-G solvation = -3688.295572 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.97847 -39.46493 -37.49593 -35.94901 -34.10632 -32.59521 -32.17531 -31.20183 -30.27039 -27.96280 -25.90950 -25.83337 -24.35758 -22.76148 -21.99941 -21.58202 -20.62619 -19.97421 -17.52472 -17.27295 -16.81178 -16.68022 -16.07565 -15.58703 -15.36334 -14.95612 -14.65747 -14.58858 -14.09816 -13.89502 -13.53607 -13.44190 -13.11060 -12.75309 -12.58616 -12.36354 -12.26160 -12.18011 -12.10545 -11.69294 -11.57583 -11.38127 -11.17587 -11.14024 -10.84557 -10.82202 -10.58773 -10.26151 -9.99790 -9.98085 -9.87006 -9.74912 -9.27275 -8.60596 -8.52792 -6.80623 -5.72613 -3.19908 2.90534 2.97187 3.41187 3.45886 3.46803 3.48643 3.82884 4.06801 4.44482 4.50862 4.54701 4.69527 4.79649 4.84701 4.88249 4.92815 5.05394 5.10756 5.17867 5.27735 5.38052 5.41328 5.43134 5.49123 5.56911 5.60069 5.65711 5.76653 5.89948 5.99160 6.01259 6.29246 6.71010 6.73406 6.75124 6.77181 6.93751 7.06490 7.37954 7.73241 7.81553 7.85390 8.38820 8.57433 9.22693 9.84659 10.32660 11.32498 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.030088 B = 0.002290 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.371905 B =12222.065508 C =12397.143544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.071 3.929 3 H 0.082 0.918 4 O -0.347 6.347 5 C 0.061 3.939 6 C 0.084 3.916 7 H 0.082 0.918 8 C -0.149 4.149 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.368 6.368 12 C 0.506 3.494 13 O -0.520 6.520 14 N -0.723 5.723 15 C 0.096 3.904 16 C 0.144 3.856 17 N -0.596 5.596 18 C 0.162 3.838 19 C -0.261 4.261 20 H 0.070 0.930 21 C 0.003 3.997 22 N -0.906 5.906 23 Si 0.908 3.092 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.282 1.282 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.394 0.606 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.042 0.958 43 H 0.029 0.971 44 H 0.047 0.953 45 H -0.003 1.003 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 11.936 24.666 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.009 3.991 3 H 0.100 0.900 4 O -0.265 6.265 5 C -0.016 4.016 6 C 0.026 3.974 7 H 0.100 0.900 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.029 4.029 11 O -0.288 6.288 12 C 0.290 3.710 13 O -0.395 6.395 14 N -0.377 5.377 15 C -0.030 4.030 16 C 0.016 3.984 17 N -0.319 5.319 18 C 0.018 3.982 19 C -0.390 4.390 20 H 0.088 0.912 21 C -0.196 4.196 22 N -0.551 5.551 23 Si 0.738 3.262 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.208 1.208 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.227 0.773 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.016 0.984 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.699 10.726 24.460 26.845 hybrid contribution -0.582 0.021 -0.367 0.688 sum -3.280 10.747 24.094 26.585 Atomic orbital electron populations 1.22210 0.93629 1.04050 1.02734 1.21940 0.95150 0.96009 0.85984 0.90020 1.88133 1.86463 1.33439 1.18460 1.22749 1.00073 0.92610 0.86149 1.22983 0.91682 0.90255 0.92481 0.90014 1.23270 1.03320 0.98383 0.93742 1.23130 0.99816 0.97484 0.98852 1.23140 0.98444 0.99556 0.81807 1.88556 1.54309 1.65926 1.19965 1.20321 0.80503 0.85886 0.84321 1.90740 1.39340 1.23021 1.86368 1.46129 1.57798 1.27687 1.06068 1.22538 0.99434 0.98022 0.82982 1.20995 0.97930 0.93873 0.85603 1.43928 1.17180 1.45548 1.25225 1.20848 0.85802 0.93106 0.98446 1.19175 0.89746 1.06056 1.24025 0.91245 1.25079 0.95846 0.97408 1.01233 1.70059 1.08668 1.35172 1.41159 0.86285 0.79440 0.80066 0.80433 1.21025 1.21583 1.20843 0.91536 0.90881 0.90925 0.91904 0.92483 0.89423 0.90065 0.89895 0.90311 0.91397 0.91360 0.77314 0.92203 0.91289 0.93300 0.94003 0.95219 0.93419 0.98407 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.07 0.89 3.13 -27.88 -0.09 0.80 16 3 H 0.08 0.75 7.79 -51.93 -0.40 0.35 16 4 O -0.35 -5.08 9.52 -57.80 -0.55 -5.63 16 5 C 0.06 0.62 5.45 37.16 0.20 0.82 16 6 C 0.08 0.84 3.72 -25.70 -0.10 0.74 16 7 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 8 C -0.15 -0.93 6.58 -24.42 -0.16 -1.09 16 9 C -0.16 -0.90 7.02 -24.72 -0.17 -1.07 16 10 C 0.05 0.38 7.80 37.88 0.30 0.68 16 11 O -0.37 -4.48 11.04 -35.96 -0.40 -4.88 16 12 C 0.51 8.60 7.18 -10.99 -0.08 8.52 16 13 O -0.52 -11.73 16.51 -14.31 -0.24 -11.97 16 14 N -0.72 -11.14 5.52 -60.30 -0.33 -11.47 16 15 C 0.10 1.91 6.00 -4.04 -0.02 1.88 16 16 C 0.14 2.86 5.82 -4.04 -0.02 2.84 16 17 N -0.60 -15.02 2.93 -181.12 -0.53 -15.55 16 18 C 0.16 4.03 9.01 59.84 0.54 4.57 16 19 C -0.26 -7.19 9.67 -15.06 -0.15 -7.34 16 20 H 0.07 1.86 7.85 -52.48 -0.41 1.45 16 21 C 0.00 0.09 5.13 -17.43 -0.09 0.00 16 22 N -0.91 -26.83 10.59 55.49 0.59 -26.24 16 23 Si 0.91 22.15 29.57 -169.99 -5.03 17.13 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 28 H 0.07 0.61 7.92 -51.93 -0.41 0.20 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.43 8.06 -51.93 -0.42 0.01 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.39 4.47 8.26 -40.82 -0.34 4.13 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.05 0.91 8.03 -51.93 -0.42 0.50 16 42 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 43 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 44 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 45 H 0.00 -0.06 7.84 -51.92 -0.41 -0.46 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -35.87 376.61 -8.45 -44.32 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.15 Total: -1.35 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 0.51 Total: 9.97 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.28 Total: -53.27 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -1.18 Total: -22.47 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.87 -8.45 -44.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691002751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.557 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds