Wall clock time and date at job start Fri Apr 10 2020 17:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46977 * 2 1 4 4 O 1.42896 * 109.47228 * 119.99844 * 2 1 3 5 5 C 1.42895 * 114.00187 * 269.99946 * 4 2 1 6 6 C 1.53004 * 109.47150 * 179.97438 * 5 4 2 7 7 H 1.08999 * 110.27244 * 54.30027 * 6 5 4 8 8 C 1.54947 * 110.30800 * 176.39200 * 6 5 4 9 9 C 1.55419 * 100.89415 * 155.28897 * 8 6 5 10 10 C 1.54381 * 102.30449 * 325.98950 * 9 8 6 11 11 O 1.43239 * 107.59029 * 21.28655 * 10 9 8 12 12 C 1.50697 * 109.46889 * 240.00111 * 2 1 3 13 13 O 1.21287 * 119.99585 * 244.99867 * 12 2 1 14 14 N 1.34773 * 120.00626 * 65.00171 * 12 2 1 15 15 C 1.46499 * 120.00611 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.47382 * 179.97438 * 15 14 12 17 17 N 1.46499 * 109.47165 * 179.97438 * 16 15 14 18 18 C 1.46496 * 120.00418 * 270.00189 * 17 16 15 19 19 C 1.36941 * 119.99621 * 89.99908 * 17 16 15 20 20 H 1.08004 * 119.99970 * 22.35069 * 19 17 16 21 21 C 1.38808 * 120.00012 * 202.34514 * 19 17 16 22 22 N 1.31624 * 120.00013 * 11.34374 * 21 19 17 23 23 Si 1.86800 * 120.00070 * 191.35084 * 21 19 17 24 24 H 1.48495 * 109.47256 * 59.99930 * 23 21 19 25 25 H 1.48495 * 109.46930 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46967 * 299.99642 * 23 21 19 27 27 H 1.08997 * 109.46625 * 299.99763 * 1 2 3 28 28 H 1.08997 * 109.46914 * 60.00257 * 1 2 3 29 29 H 1.08997 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47356 * 300.00114 * 5 4 2 31 31 H 1.09004 * 109.47195 * 59.99941 * 5 4 2 32 32 H 1.09006 * 111.12483 * 273.27828 * 8 6 5 33 33 H 1.09002 * 111.12832 * 37.44136 * 8 6 5 34 34 H 1.08996 * 110.88066 * 207.75259 * 9 8 6 35 35 H 1.08997 * 110.93047 * 84.25011 * 9 8 6 36 36 H 1.09001 * 109.83231 * 261.76734 * 10 9 8 37 37 H 1.09001 * 109.90138 * 140.83986 * 10 9 8 38 38 H 0.97005 * 119.99479 * 359.97438 * 14 12 2 39 39 H 1.08997 * 109.47143 * 299.99830 * 15 14 12 40 40 H 1.08997 * 109.47015 * 59.99534 * 15 14 12 41 41 H 1.08997 * 109.47076 * 300.00157 * 16 15 14 42 42 H 1.09001 * 109.46937 * 59.99491 * 16 15 14 43 43 H 1.08999 * 109.46929 * 94.20661 * 18 17 16 44 44 H 1.08993 * 109.47248 * 214.21503 * 18 17 16 45 45 H 1.09010 * 109.46795 * 334.21244 * 18 17 16 46 46 H 0.96998 * 119.99903 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2002 0.1829 2.2940 6 6 2.7080 -0.6408 3.4792 7 1 3.6005 -1.1989 3.1963 8 6 3.0111 0.2830 4.6856 9 6 2.8595 -0.7164 5.8662 10 6 1.7356 -1.6489 5.3656 11 8 1.6840 -1.5373 3.9385 12 6 2.0323 -0.7104 -1.2305 13 8 2.6530 -1.7467 -1.1214 14 7 1.7920 -0.1942 -2.4520 15 6 2.2807 -0.8845 -3.6482 16 6 1.8753 -0.0947 -4.8943 17 7 2.3646 -0.7848 -6.0904 18 6 3.6926 -0.4727 -6.6244 19 6 1.5806 -1.7216 -6.7092 20 1 0.5099 -1.7081 -6.5680 21 6 2.1619 -2.6883 -7.5181 22 7 3.4683 -2.8486 -7.5170 23 14 1.0901 -3.7616 -8.6084 24 1 0.3360 -2.9051 -9.5585 25 1 1.9470 -4.7071 -9.3680 26 1 0.1355 -4.5257 -7.7657 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.9320 0.9514 2.0450 31 1 1.2539 0.6547 2.5588 32 1 4.0252 0.6791 4.6320 33 1 2.2801 1.0883 4.7573 34 1 2.5576 -0.1991 6.7768 35 1 3.7829 -1.2730 6.0262 36 1 0.7819 -1.3423 5.7953 37 1 1.9544 -2.6786 5.6482 38 1 1.2953 0.6344 -2.5392 39 1 3.3670 -0.9623 -3.6044 40 1 1.8465 -1.8832 -3.6942 41 1 0.7890 -0.0173 -4.9379 42 1 2.3092 0.9042 -4.8484 43 1 4.4206 -1.1774 -6.2225 44 1 3.6743 -0.5494 -7.7115 45 1 3.9710 0.5411 -6.3363 46 1 3.8745 -3.5244 -8.0820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691002751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:52 Heat of formation + Delta-G solvation = -132.978537 kcal Electronic energy + Delta-G solvation = -24424.500264 eV Core-core repulsion = 20735.073002 eV Total energy + Delta-G solvation = -3689.427262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06263 -40.39135 -38.58205 -37.75809 -35.75605 -33.57656 -33.17349 -32.71270 -31.12342 -29.58093 -27.92751 -26.60962 -25.68033 -24.25513 -22.56044 -22.39270 -22.28292 -21.33061 -18.84075 -18.35685 -18.31613 -17.69906 -16.94419 -16.75259 -16.72131 -16.36887 -16.07250 -15.75442 -15.39300 -15.22255 -14.92816 -14.52532 -14.27427 -14.12831 -14.09654 -13.48079 -13.33904 -13.12475 -13.02991 -12.76761 -12.66248 -12.64244 -12.51659 -12.46774 -12.18852 -12.11217 -12.06741 -12.00064 -11.77475 -11.68624 -11.01617 -10.66362 -10.51638 -10.48167 -10.10424 -8.86738 -7.85425 -5.34961 1.46116 1.48428 1.54942 1.57956 1.84786 2.50310 2.79317 2.90799 3.30030 3.54478 3.61827 3.83643 3.89446 3.96728 3.97334 4.04361 4.14439 4.23765 4.28137 4.32994 4.38248 4.48258 4.59407 4.66010 4.70470 4.80630 4.81565 4.84875 4.88768 4.97530 5.00703 5.06520 5.14088 5.21402 5.23918 5.32432 5.44873 5.62439 5.72517 6.03058 6.18567 6.30711 6.62296 7.12329 7.28703 7.83425 8.25351 9.18211 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.030088 B = 0.002290 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.371905 B =12222.065508 C =12397.143544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.078 3.922 3 H 0.127 0.873 4 O -0.390 6.390 5 C 0.056 3.944 6 C 0.072 3.928 7 H 0.058 0.942 8 C -0.138 4.138 9 C -0.150 4.150 10 C 0.036 3.964 11 O -0.406 6.406 12 C 0.500 3.500 13 O -0.587 6.587 14 N -0.703 5.703 15 C 0.116 3.884 16 C 0.147 3.853 17 N -0.615 5.615 18 C 0.175 3.825 19 C -0.266 4.266 20 H 0.077 0.923 21 C -0.058 4.058 22 N -0.940 5.940 23 Si 0.972 3.028 24 H -0.272 1.272 25 H -0.296 1.296 26 H -0.279 1.279 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.419 0.581 39 H 0.032 0.968 40 H 0.025 0.975 41 H 0.068 0.932 42 H 0.079 0.921 43 H -0.003 1.003 44 H 0.022 0.978 45 H 0.038 0.962 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 15.080 26.193 30.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 H 0.144 0.856 4 O -0.309 6.309 5 C -0.020 4.020 6 C 0.014 3.986 7 H 0.076 0.924 8 C -0.176 4.176 9 C -0.187 4.187 10 C -0.040 4.040 11 O -0.326 6.326 12 C 0.286 3.714 13 O -0.466 6.466 14 N -0.357 5.357 15 C -0.012 4.012 16 C 0.020 3.980 17 N -0.338 5.338 18 C 0.030 3.970 19 C -0.396 4.396 20 H 0.095 0.905 21 C -0.253 4.253 22 N -0.587 5.587 23 Si 0.800 3.200 24 H -0.197 1.197 25 H -0.223 1.223 26 H -0.204 1.204 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.257 0.743 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.015 0.985 44 H 0.041 0.959 45 H 0.056 0.944 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.372 13.948 26.018 29.843 hybrid contribution -0.090 -0.923 -0.738 1.185 sum -4.462 13.025 25.280 28.786 Atomic orbital electron populations 1.22222 0.91681 1.02960 1.05216 1.22018 0.96325 0.96787 0.83154 0.85593 1.88100 1.86913 1.35959 1.19934 1.23025 1.01751 0.92544 0.84679 1.23144 0.90484 0.90766 0.94177 0.92435 1.23264 1.04702 0.97982 0.91615 1.23142 0.98961 0.97030 0.99574 1.23351 1.00110 1.00201 0.80337 1.88513 1.55037 1.66883 1.22202 1.21351 0.79047 0.85143 0.85845 1.90713 1.42375 1.26143 1.87358 1.45782 1.57334 1.28110 1.04504 1.21954 0.97400 0.96528 0.85275 1.21160 0.99115 0.94535 0.83151 1.44194 1.16945 1.45424 1.27227 1.20604 0.85320 0.94373 0.96725 1.19573 0.90476 1.05990 1.23569 0.90504 1.25898 0.97029 0.99224 1.03108 1.70247 1.10273 1.35990 1.42185 0.85273 0.77721 0.78310 0.78733 1.19716 1.22269 1.20447 0.88977 0.88447 0.93799 0.89443 0.90634 0.87822 0.88446 0.87543 0.90214 0.90257 0.91781 0.74288 0.94997 0.95597 0.91407 0.90303 0.98505 0.95919 0.94385 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.48 71.98 0.68 -2.22 16 2 C 0.08 1.78 3.13 29.85 0.09 1.87 16 3 H 0.13 1.75 7.79 -2.39 -0.02 1.73 16 4 O -0.39 -11.16 9.52 -127.41 -1.21 -12.37 16 5 C 0.06 1.02 5.45 71.98 0.39 1.41 16 6 C 0.07 1.39 3.72 31.26 0.12 1.51 16 7 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 8 C -0.14 -1.38 6.58 32.09 0.21 -1.17 16 9 C -0.15 -1.44 7.02 31.90 0.22 -1.22 16 10 C 0.04 0.56 7.80 72.45 0.56 1.13 16 11 O -0.41 -9.93 11.04 -148.28 -1.64 -11.57 16 12 C 0.50 16.80 7.18 87.66 0.63 17.42 16 13 O -0.59 -27.62 16.51 15.94 0.26 -27.36 16 14 N -0.70 -20.56 5.52 -463.07 -2.55 -23.12 16 15 C 0.12 4.62 6.00 86.38 0.52 5.14 16 16 C 0.15 5.54 5.82 86.38 0.50 6.04 16 17 N -0.62 -30.72 2.93 -726.94 -2.13 -32.85 16 18 C 0.17 8.70 9.01 127.77 1.15 9.85 16 19 C -0.27 -14.67 9.67 84.03 0.81 -13.86 16 20 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 21 C -0.06 -3.31 5.13 84.86 0.44 -2.87 16 22 N -0.94 -57.43 10.59 21.65 0.23 -57.20 16 23 Si 0.97 46.08 29.57 68.60 2.03 48.11 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 27 H 0.09 1.20 7.87 -2.39 -0.02 1.18 16 28 H 0.10 1.23 7.92 -2.39 -0.02 1.21 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 31 H 0.08 1.07 7.87 -2.38 -0.02 1.05 16 32 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.10 0.68 8.06 -2.39 -0.02 0.66 16 34 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.42 7.98 8.26 -92.70 -0.77 7.21 16 39 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 2.32 8.03 -2.39 -0.02 2.30 16 42 H 0.08 2.42 7.86 -2.39 -0.02 2.40 16 43 H 0.00 -0.19 7.42 -2.39 -0.02 -0.21 16 44 H 0.02 1.20 7.19 -2.39 -0.02 1.18 16 45 H 0.04 1.55 7.84 -2.38 -0.02 1.53 16 46 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -83.80 376.61 1.51 -82.29 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.18 Total: 11.03 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: 6.33 Total: 23.04 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -4.45 Total: -113.16 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -2.59 Total: -51.30 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -83.80 1.51 -82.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691002751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.687 kcal (2) G-P(sol) polarization free energy of solvation -83.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds