Wall clock time and date at job start Fri Apr 10 2020 17:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99736 * 2 1 4 4 H 1.48501 * 109.46996 * 270.00002 * 3 2 1 5 5 H 1.48505 * 109.47390 * 29.99894 * 3 2 1 6 6 H 1.48503 * 109.47242 * 150.00183 * 3 2 1 7 7 C 1.37870 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99983 * 173.55553 * 7 2 1 9 9 C 1.50697 * 120.00191 * 353.55966 * 7 2 1 10 10 C 1.53005 * 115.54927 * 85.40713 * 9 7 2 11 11 N 1.46497 * 109.47285 * 65.13135 * 10 9 7 12 12 C 1.34773 * 120.00361 * 178.20767 * 11 10 9 13 13 O 1.21285 * 119.99510 * 0.27385 * 12 11 10 14 14 C 1.50697 * 120.00406 * 180.26939 * 12 11 10 15 15 C 1.53000 * 109.47353 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.64184 * 305.43390 * 15 14 12 17 17 C 1.53874 * 109.64614 * 185.00086 * 15 14 12 18 18 C 1.55055 * 106.62306 * 192.96805 * 17 15 14 19 19 S 1.83285 * 102.56617 * 42.43604 * 18 17 15 20 20 O 1.42094 * 109.35423 * 90.18526 * 19 18 17 21 21 O 1.42099 * 109.35476 * 223.25826 * 19 18 17 22 22 C 1.54166 * 109.64372 * 65.72645 * 15 14 12 23 23 C 1.53005 * 117.50005 * 231.07837 * 9 7 2 24 24 C 1.53004 * 117.50103 * 299.73822 * 9 7 2 25 25 H 0.97003 * 120.00760 * 5.06540 * 1 2 3 26 26 H 1.08999 * 109.47098 * 305.12838 * 10 9 7 27 27 H 1.09003 * 109.46755 * 185.12667 * 10 9 7 28 28 H 0.97005 * 120.00112 * 358.47924 * 11 10 9 29 29 H 1.09000 * 109.47485 * 300.00358 * 14 12 11 30 30 H 1.08998 * 109.46812 * 60.00282 * 14 12 11 31 31 H 1.09001 * 110.02761 * 312.25918 * 17 15 14 32 32 H 1.08999 * 110.02755 * 73.63326 * 17 15 14 33 33 H 1.08999 * 110.79038 * 160.70673 * 18 17 15 34 34 H 1.08999 * 110.78716 * 283.97578 * 18 17 15 35 35 H 1.08996 * 110.32010 * 266.66548 * 22 15 14 36 36 H 1.09005 * 110.31814 * 28.86210 * 22 15 14 37 37 H 1.09006 * 117.49485 * 215.00160 * 23 9 7 38 38 H 1.08992 * 117.49885 * 0.02562 * 23 9 7 39 39 H 1.08999 * 117.49492 * 359.97374 * 24 9 7 40 40 H 1.08997 * 117.50102 * 144.96878 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0794 -1.1969 -0.1044 9 6 1.2582 -2.4949 0.1475 10 6 0.7023 -3.0869 -1.1493 11 7 1.8114 -3.4597 -2.0307 12 6 1.5605 -4.0383 -3.2218 13 8 0.4162 -4.2458 -3.5660 14 6 2.7017 -4.4273 -4.1259 15 6 2.1471 -5.0596 -5.4040 16 1 1.4886 -5.8892 -5.1464 17 6 3.3084 -5.5716 -6.2740 18 6 2.7115 -5.8868 -7.6699 19 16 1.5989 -4.4594 -7.9594 20 8 2.3190 -3.4272 -8.6189 21 8 0.3698 -4.9227 -8.5016 22 6 1.3579 -4.0043 -6.2041 23 6 1.7470 -3.4728 1.2180 24 6 0.4416 -2.7006 1.4250 25 1 -0.4851 0.8367 -0.0742 26 1 0.0755 -2.3471 -1.6470 27 1 0.1080 -3.9713 -0.9194 28 1 2.7267 -3.2937 -1.7555 29 1 3.2818 -3.5404 -4.3810 30 1 3.3421 -5.1455 -3.6141 31 1 4.0764 -4.8031 -6.3613 32 1 3.7328 -6.4751 -5.8360 33 1 3.4955 -5.9259 -8.4261 34 1 2.1499 -6.8208 -7.6485 35 1 0.3002 -4.0452 -5.9442 36 1 1.7571 -3.0081 -6.0132 37 1 1.6726 -4.5379 0.9983 38 1 2.6081 -3.1750 1.8162 39 1 0.4446 -1.8950 2.1592 40 1 -0.4918 -3.2572 1.3415 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701294888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:49 Heat of formation + Delta-G solvation = -96.167987 kcal Electronic energy + Delta-G solvation = -22579.318054 eV Core-core repulsion = 19100.688132 eV Total energy + Delta-G solvation = -3478.629923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.51735 -37.27246 -37.08903 -36.42939 -36.05283 -33.36929 -32.04012 -31.19494 -28.59859 -26.30570 -25.35900 -24.21244 -21.32425 -20.96056 -19.78856 -19.30052 -18.94674 -17.24969 -16.72141 -16.64446 -15.98549 -15.78493 -15.17711 -15.04703 -14.74307 -14.38326 -14.24221 -13.84423 -13.51712 -13.21921 -12.66825 -12.61960 -12.31918 -12.22816 -12.11785 -12.05877 -11.89422 -11.65755 -11.41252 -11.09013 -11.05342 -10.99333 -10.79922 -10.57989 -10.37444 -10.33762 -9.73737 -9.36502 -9.03632 -8.56341 -8.36332 -8.15689 -6.14220 -4.23523 -0.06896 2.40983 3.09522 3.21129 3.29845 3.30883 3.44381 3.64801 3.89977 4.14878 4.29617 4.38060 4.44453 4.64613 4.68861 5.01444 5.13850 5.20087 5.24524 5.31684 5.36545 5.42520 5.49250 5.58089 5.90683 5.92435 5.96657 6.26120 6.39299 6.48751 6.61893 6.81026 7.02736 7.19479 7.35914 7.41453 7.74707 8.20083 8.26701 8.75991 8.79377 9.43956 10.93505 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.019756 B = 0.003466 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.941824 B = 8077.342559 C = 8721.703994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.162 3.838 11 N -0.703 5.703 12 C 0.501 3.499 13 O -0.556 6.556 14 C -0.134 4.134 15 C -0.065 4.065 16 H 0.101 0.899 17 C -0.118 4.118 18 C -0.590 4.590 19 S 2.382 3.618 20 O -0.943 6.943 21 O -0.943 6.943 22 C -0.576 4.576 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.262 0.738 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.400 0.600 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.152 0.848 36 H 0.136 0.864 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.991 -11.666 -10.216 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.039 3.961 11 N -0.351 5.351 12 C 0.286 3.714 13 O -0.435 6.435 14 C -0.175 4.175 15 C -0.085 4.085 16 H 0.119 0.881 17 C -0.156 4.156 18 C -0.719 4.719 19 S 2.566 3.434 20 O -0.940 6.940 21 O -0.940 6.940 22 C -0.706 4.706 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.234 0.766 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.170 0.830 36 H 0.154 0.846 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.621 -11.260 -11.232 17.228 hybrid contribution 1.109 0.776 0.968 1.663 sum 7.730 -10.485 -10.265 16.584 Atomic orbital electron populations 1.69967 1.05931 1.27040 1.48015 1.24983 0.94793 0.98989 0.94223 0.86636 0.79939 0.83505 0.78198 1.20632 1.21123 1.19792 1.20323 0.92800 0.88602 1.52290 0.92204 1.19038 0.98605 0.93937 0.85742 1.21003 0.87353 0.96911 0.90803 1.45999 1.11515 1.59767 1.17795 1.20417 0.90315 0.78376 0.82301 1.90645 1.22825 1.55855 1.74203 1.21720 0.97965 1.02751 0.95049 1.21305 0.95552 0.97220 0.94467 0.88060 1.22319 0.98266 1.03766 0.91278 1.30611 1.16004 1.19450 1.05856 1.09260 0.76674 0.78161 0.79304 1.93608 1.73636 1.54326 1.72413 1.93605 1.42325 1.81283 1.76803 1.30581 1.11603 1.08223 1.20222 1.23024 0.98713 0.95599 1.07453 1.22494 0.92257 1.01085 1.02797 0.92774 0.90937 0.94503 0.76562 0.88369 0.88411 0.89246 0.88341 0.84719 0.84544 0.83010 0.84575 0.91692 0.90346 0.89814 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.72 12.91 55.43 0.72 -23.00 16 2 C 0.07 1.92 5.39 -17.82 -0.10 1.83 16 3 Si 0.89 20.04 29.55 -169.99 -5.02 15.02 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.50 -12.43 8.63 -34.44 -0.30 -12.73 16 8 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.03 0.62 1.38 -155.65 -0.21 0.40 16 10 C 0.16 3.48 5.50 -4.04 -0.02 3.46 16 11 N -0.70 -12.24 5.47 -60.29 -0.33 -12.57 16 12 C 0.50 7.94 7.59 -10.99 -0.08 7.85 16 13 O -0.56 -10.71 14.52 5.55 0.08 -10.62 16 14 C -0.13 -1.34 5.07 -27.88 -0.14 -1.49 16 15 C -0.07 -0.58 2.24 -89.56 -0.20 -0.79 16 16 H 0.10 0.93 7.95 -51.93 -0.41 0.52 16 17 C -0.12 -0.69 5.80 -25.19 -0.15 -0.84 16 18 C -0.59 -3.56 7.31 38.24 0.28 -3.28 16 19 S 2.38 23.60 6.10 -107.50 -0.66 22.95 16 20 O -0.94 -12.50 18.14 -57.73 -1.05 -13.55 16 21 O -0.94 -13.02 18.15 -57.73 -1.05 -14.06 16 22 C -0.58 -5.99 5.83 37.77 0.22 -5.77 16 23 C -0.21 -4.17 9.96 -26.69 -0.27 -4.44 16 24 C -0.15 -3.28 9.42 -26.69 -0.25 -3.53 16 25 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 26 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 27 H 0.04 0.79 8.09 -51.93 -0.42 0.36 16 28 H 0.40 6.26 8.37 -40.82 -0.34 5.92 16 29 H 0.10 0.84 8.03 -51.93 -0.42 0.43 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.43 8.11 -51.93 -0.42 0.01 16 32 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.15 1.85 7.30 -51.93 -0.38 1.47 16 36 H 0.14 1.38 7.81 -51.93 -0.41 0.97 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -34.41 345.35 -9.47 -43.88 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.15 Total: 6.08 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -1.22 Total: -19.31 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.39 Total: -35.58 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -2.01 Total: -38.24 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 23.60 SS G_CDS: -0.66 Total: 22.95 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.41 -9.47 -43.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.290 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds