Wall clock time and date at job start Fri Apr 10 2020 17:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.27929 * 118.24028 * 2 1 4 4 C 1.31095 * 124.26031 * 179.97438 * 3 2 1 5 5 C 1.47635 * 120.39814 * 179.97438 * 4 3 2 6 6 O 1.21583 * 120.00080 * 179.97438 * 5 4 3 7 7 N 1.34777 * 119.99650 * 359.97438 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72386 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.50700 * 109.47208 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99770 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99720 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00513 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99651 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47265 * 0.02562 * 14 12 10 16 16 H 1.48494 * 109.46830 * 120.00397 * 14 12 10 17 17 H 1.48503 * 109.47108 * 240.00004 * 14 12 10 18 18 C 1.47176 * 119.20913 * 0.25099 * 4 3 2 19 19 C 1.39065 * 122.80104 * 180.32127 * 18 4 3 20 20 C 1.37885 * 119.39674 * 179.75683 * 19 18 4 21 21 C 1.38878 * 120.79609 * 359.68964 * 20 19 18 22 22 C 1.37866 * 120.74087 * 359.97438 * 21 20 19 23 23 C 1.39133 * 119.33889 * 0.02562 * 22 21 20 24 24 C 1.34898 * 118.24490 * 179.97438 * 2 1 3 25 25 O 1.21735 * 120.77325 * 359.97438 * 24 2 1 26 26 H 1.08996 * 109.47296 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47451 * 120.00582 * 1 2 3 28 28 H 1.09004 * 109.46683 * 240.00283 * 1 2 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 30 30 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 31 31 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 32 32 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 33 33 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 34 34 H 0.96999 * 120.00239 * 180.02562 * 13 12 10 35 35 H 1.08003 * 120.29756 * 359.45033 * 19 18 4 36 36 H 1.07999 * 119.60248 * 179.70751 * 20 19 18 37 37 H 1.07996 * 119.62708 * 180.02562 * 21 20 19 38 38 H 1.07999 * 120.33296 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0703 1.1270 0.0000 4 6 3.3740 1.2645 0.0005 5 6 3.9834 2.6092 -0.0001 6 8 5.1934 2.7284 0.0008 7 7 3.1983 3.7048 -0.0017 8 6 3.8030 5.0391 0.0038 9 6 2.6996 6.0991 0.0076 10 6 3.3216 7.4717 0.0127 11 1 4.3964 7.5775 0.0135 12 6 2.5185 8.5924 0.0162 13 7 1.2096 8.4636 0.0157 14 14 3.2895 10.2939 0.0232 15 1 4.7690 10.1670 0.0232 16 1 2.8571 11.0382 -1.1868 17 1 2.8552 11.0292 1.2381 18 6 4.2230 0.0623 -0.0046 19 6 5.6124 0.1212 0.0022 20 6 6.3394 -1.0504 0.0019 21 6 5.7008 -2.2836 0.0015 22 6 4.3245 -2.3644 0.0019 23 6 3.5728 -1.1936 0.0021 24 6 2.1034 -1.1884 0.0005 25 8 1.4767 -2.2320 0.0015 26 1 -0.3634 1.0276 0.0005 27 1 -0.3634 -0.5139 -0.8899 28 1 -0.3633 -0.5138 0.8901 29 1 2.2330 3.6098 -0.0021 30 1 4.4207 5.1545 0.8945 31 1 4.4213 5.1616 -0.8855 32 1 2.0820 5.9837 -0.8830 33 1 2.0813 5.9767 0.8970 34 1 0.6447 9.2521 0.0178 35 1 6.1173 1.0759 0.0025 36 1 7.4186 -1.0085 0.0023 37 1 6.2888 -3.1894 0.0017 38 1 3.8346 -3.3269 0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784135314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:20 Heat of formation + Delta-G solvation = 0.101756 kcal Electronic energy + Delta-G solvation = -23336.158309 eV Core-core repulsion = 19758.551755 eV Total energy + Delta-G solvation = -3577.606554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.05712 -39.51863 -38.71837 -37.92977 -35.04523 -33.78915 -32.87814 -31.60048 -30.94822 -29.70457 -27.94329 -25.98690 -24.62292 -23.86661 -22.65099 -21.24355 -20.85777 -19.20331 -18.66338 -17.55645 -16.93020 -16.55763 -16.42505 -15.87079 -15.06578 -15.05373 -14.89600 -14.72656 -14.45088 -14.18757 -13.77119 -13.48623 -13.22609 -12.82494 -12.81975 -12.46113 -12.42388 -12.31963 -11.95843 -11.56548 -11.22957 -11.08191 -10.65386 -10.40220 -10.09024 -9.91238 -9.88416 -9.54987 -9.37922 -9.25444 -8.70341 -8.45790 -8.33206 -6.11621 -4.14665 0.26261 0.42121 1.45002 1.94767 2.40105 3.15631 3.20989 3.27092 3.35194 3.39961 3.67541 3.71228 4.25345 4.39026 4.48100 4.58306 4.80882 4.90377 4.99183 5.01156 5.08291 5.25746 5.27933 5.34313 5.38415 5.62209 5.77042 5.93013 6.11489 6.15755 6.26074 6.27501 6.52898 6.67434 6.80053 7.24149 7.47751 7.57915 7.75730 7.86630 7.98565 8.22485 8.42120 8.91435 9.50443 10.99937 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.022335 B = 0.003143 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.357875 B = 8907.913752 C =10135.507078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.365 5.365 3 N -0.199 5.199 4 C 0.064 3.936 5 C 0.583 3.417 6 O -0.535 6.535 7 N -0.696 5.696 8 C 0.119 3.881 9 C 0.011 3.989 10 C -0.521 4.521 11 H 0.061 0.939 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.031 4.031 19 C -0.092 4.092 20 C -0.090 4.090 21 C -0.119 4.119 22 C -0.058 4.058 23 C -0.143 4.143 24 C 0.514 3.486 25 O -0.507 6.507 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.407 0.593 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.175 0.825 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 -20.780 -0.038 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.185 5.185 3 N -0.023 5.023 4 C -0.116 4.116 5 C 0.366 3.634 6 O -0.412 6.412 7 N -0.345 5.345 8 C -0.003 4.003 9 C -0.026 4.026 10 C -0.560 4.560 11 H 0.079 0.921 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.035 4.035 19 C -0.112 4.112 20 C -0.109 4.109 21 C -0.139 4.139 22 C -0.077 4.077 23 C -0.149 4.149 24 C 0.308 3.692 25 O -0.382 6.382 26 H 0.123 0.877 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.242 0.758 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.192 0.808 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.896 -20.736 -0.039 20.937 hybrid contribution 0.246 0.298 0.001 0.386 sum 3.142 -20.438 -0.037 20.678 Atomic orbital electron populations 1.22175 0.73613 1.05590 1.04129 1.46082 1.09448 1.01455 1.61515 1.70272 1.12663 1.11601 1.07755 1.22830 0.87110 0.95120 1.06565 1.17090 0.86346 0.82118 0.77885 1.90631 1.13180 1.85420 1.51955 1.46265 1.10767 1.06497 1.71013 1.21883 0.98209 0.78862 1.01299 1.19347 0.93107 0.92090 0.98083 1.21069 0.93310 0.90257 1.51378 0.92104 1.24996 0.94816 0.99498 0.94972 1.69961 1.03153 1.29743 1.50332 0.86462 0.79590 0.83929 0.77614 1.19552 1.20959 1.20953 1.19329 0.94889 0.90338 0.98951 1.22114 0.92148 1.01347 0.95579 1.21561 1.00854 0.91995 0.96450 1.21339 0.94014 0.98464 1.00051 1.20924 0.93624 0.97111 0.95994 1.19902 0.91864 0.94584 1.08524 1.19082 0.88633 0.83835 0.77685 1.90855 1.68531 1.30257 1.48547 0.87655 0.89783 0.89787 0.75796 0.91943 0.91933 0.95770 0.95774 0.92873 0.80843 0.84718 0.84872 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.13 59.84 0.61 1.37 16 2 N -0.36 -4.62 3.62 -68.29 -0.25 -4.86 16 3 N -0.20 -2.70 9.88 34.51 0.34 -2.36 16 4 C 0.06 0.94 7.04 -80.72 -0.57 0.37 16 5 C 0.58 9.59 7.80 -12.42 -0.10 9.49 16 6 O -0.54 -9.64 13.69 5.29 0.07 -9.56 16 7 N -0.70 -11.81 5.55 -61.31 -0.34 -12.15 16 8 C 0.12 2.38 5.61 -4.04 -0.02 2.35 16 9 C 0.01 0.27 5.09 -27.88 -0.14 0.12 16 10 C -0.52 -14.00 9.11 -34.44 -0.31 -14.31 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 14 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.03 -0.42 5.90 -104.75 -0.62 -1.04 16 19 C -0.09 -1.13 9.36 -39.40 -0.37 -1.50 16 20 C -0.09 -0.84 10.01 -39.47 -0.40 -1.24 16 21 C -0.12 -1.03 10.01 -39.48 -0.40 -1.42 16 22 C -0.06 -0.61 9.71 -39.39 -0.38 -0.99 16 23 C -0.14 -1.86 5.90 -104.83 -0.62 -2.48 16 24 C 0.51 7.09 7.68 -12.68 -0.10 6.99 16 25 O -0.51 -7.62 16.62 5.16 0.09 -7.53 16 26 H 0.10 0.80 8.02 -51.93 -0.42 0.38 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.41 6.34 7.83 -40.82 -0.32 6.02 16 30 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 35 H 0.17 2.32 5.22 -52.48 -0.27 2.05 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.14 1.31 7.87 -52.49 -0.41 0.89 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -31.49 332.28 -7.22 -38.71 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.35 Total: 2.47 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.51 Total: -0.76 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.49 Total: -44.22 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: 0.16 Total: -17.10 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.49 -7.22 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784135314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.814 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds