Wall clock time and date at job start Fri Apr 10 2020 17:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39558 * 120.14151 * 296.70258 * 3 2 1 5 5 C 1.37954 * 119.85488 * 179.97438 * 4 3 2 6 6 C 1.38364 * 120.14188 * 0.02562 * 5 4 3 7 7 C 1.38327 * 120.28803 * 0.02562 * 6 5 4 8 8 C 1.37989 * 120.13993 * 359.69965 * 7 6 5 9 9 C 1.50703 * 120.07446 * 180.27931 * 8 7 6 10 10 C 1.50696 * 109.47058 * 265.93989 * 9 8 7 11 11 O 1.21300 * 120.00078 * 5.06795 * 10 9 8 12 12 N 1.34777 * 119.99962 * 185.07173 * 10 9 8 13 13 C 1.37100 * 120.00244 * 5.16273 * 12 10 9 14 14 H 1.07999 * 119.99939 * 318.74623 * 13 12 10 15 15 C 1.38954 * 119.99875 * 138.73704 * 13 12 10 16 16 N 1.31413 * 119.99767 * 160.34304 * 15 13 12 17 17 Si 1.86803 * 119.99944 * 340.34371 * 15 13 12 18 18 H 1.48497 * 109.46979 * 95.43262 * 17 15 13 19 19 H 1.48495 * 109.46695 * 215.43093 * 17 15 13 20 20 H 1.48496 * 109.47050 * 335.43068 * 17 15 13 21 21 C 1.46501 * 120.00044 * 185.16874 * 12 10 9 22 22 C 1.50707 * 109.47210 * 89.99638 * 21 12 10 23 23 O 1.20828 * 119.99946 * 0.02562 * 22 21 12 24 24 O 1.34225 * 119.99894 * 180.02562 * 22 21 12 25 25 C 1.45204 * 117.00215 * 180.02562 * 24 22 21 26 26 H 4.52091 * 14.02114 * 0.02562 * 4 2 1 27 27 H 1.08004 * 120.06891 * 359.95871 * 4 3 2 28 28 H 1.07998 * 119.92473 * 180.02562 * 5 4 3 29 29 H 1.08001 * 119.85265 * 179.97438 * 6 5 4 30 30 H 1.07996 * 119.92507 * 179.97438 * 7 6 5 31 31 H 1.09003 * 109.46739 * 25.93375 * 9 8 7 32 32 H 1.08999 * 109.47640 * 145.93727 * 9 8 7 33 33 H 0.96995 * 119.99781 * 179.97438 * 16 15 13 34 34 H 1.08996 * 109.47440 * 209.99794 * 21 12 10 35 35 H 1.08999 * 109.47309 * 329.99950 * 21 12 10 36 36 H 1.08997 * 109.46951 * 300.00059 * 25 24 22 37 37 H 1.09003 * 109.46659 * 59.99685 * 25 24 22 38 38 H 1.08991 * 109.47246 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3070 -0.5414 1.0782 5 6 4.6865 -0.5381 1.0718 6 6 5.3751 0.0014 -0.0003 7 6 4.6862 0.5411 -1.0715 8 6 3.3063 0.5390 -1.0799 9 6 2.5573 1.1217 -2.2507 10 6 2.2145 2.5604 -1.9618 11 8 2.6243 3.0903 -0.9505 12 7 1.4526 3.2584 -2.8271 13 6 0.9018 2.6321 -3.9152 14 1 1.4824 1.9152 -4.4768 15 6 -0.4035 2.9194 -4.2952 16 7 -0.8088 2.6430 -5.5143 17 14 -1.5820 3.6988 -3.0732 18 1 -1.5884 5.1717 -3.2621 19 1 -2.9499 3.1652 -3.2956 20 1 -1.1446 3.3789 -1.6907 21 6 1.2130 4.6866 -2.6050 22 6 2.2864 5.4892 -3.2940 23 8 3.1616 4.9260 -3.9080 24 8 2.2704 6.8296 -3.2256 25 6 3.3352 7.5376 -3.9135 26 1 -1.0501 -0.0006 0.0002 27 1 2.7706 -0.9622 1.9158 28 1 5.2301 -0.9576 1.9053 29 1 6.4551 0.0019 -0.0002 30 1 5.2295 0.9611 -1.9050 31 1 3.1806 1.0689 -3.1433 32 1 1.6404 0.5554 -2.4137 33 1 -1.7201 2.8432 -5.7795 34 1 0.2388 4.9590 -3.0109 35 1 1.2326 4.8963 -1.5356 36 1 4.2979 7.2349 -3.5017 37 1 3.3031 7.2981 -4.9764 38 1 3.2041 8.6112 -3.7784 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811905124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:35 Heat of formation + Delta-G solvation = -24.310551 kcal Electronic energy + Delta-G solvation = -24311.639767 eV Core-core repulsion = 20700.681865 eV Total energy + Delta-G solvation = -3610.957902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.07727 -39.42283 -38.26001 -35.93574 -34.85873 -33.58752 -32.26979 -32.05610 -29.93836 -29.21551 -27.40973 -26.14504 -24.74979 -23.00160 -21.70995 -20.73510 -19.19365 -18.46221 -17.48812 -17.14611 -16.57205 -15.98056 -15.83196 -15.49781 -15.34333 -15.22289 -14.72647 -13.96847 -13.86077 -13.41546 -13.25625 -13.01035 -12.80480 -12.73223 -12.60387 -12.11224 -11.83995 -11.57410 -11.47792 -11.13506 -11.04234 -10.86696 -10.78132 -10.58909 -10.36547 -10.14316 -10.03110 -9.92057 -9.36933 -8.87622 -8.50300 -8.14398 -7.95703 -6.56935 -4.23086 1.23942 1.63429 2.83095 2.94552 2.99680 3.12507 3.15497 3.20614 3.35139 3.71597 4.00289 4.15377 4.42970 4.62056 4.86069 5.10193 5.14821 5.22067 5.35271 5.42868 5.43735 5.54075 5.67448 5.75923 5.77723 5.83245 5.86056 6.05392 6.07462 6.20253 6.38626 6.47962 6.64823 6.68664 6.83023 6.91774 7.15097 7.19880 7.90462 7.94021 8.13958 8.37389 8.82099 9.16928 9.49579 10.53345 Molecular weight = 301.11amu Principal moments of inertia in cm(-1) A = 0.013341 B = 0.005943 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.258397 B = 4710.387305 C = 6011.659786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.141 4.141 3 C 0.020 3.980 4 C -0.099 4.099 5 C -0.130 4.130 6 C -0.112 4.112 7 C -0.108 4.108 8 C -0.026 4.026 9 C -0.088 4.088 10 C 0.508 3.492 11 O -0.582 6.582 12 N -0.453 5.453 13 C -0.343 4.343 14 H 0.107 0.893 15 C 0.069 3.931 16 N -0.853 5.853 17 Si 0.859 3.141 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.254 1.254 21 C 0.109 3.891 22 C 0.449 3.551 23 O -0.490 6.490 24 O -0.370 6.370 25 C 0.036 3.964 26 H 0.221 0.779 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.277 0.723 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 -0.979 7.668 9.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 C 0.020 3.980 4 C -0.117 4.117 5 C -0.148 4.148 6 C -0.130 4.130 7 C -0.126 4.126 8 C -0.026 4.026 9 C -0.127 4.127 10 C 0.298 3.702 11 O -0.465 6.465 12 N -0.175 5.175 13 C -0.470 4.470 14 H 0.124 0.876 15 C -0.139 4.139 16 N -0.488 5.488 17 Si 0.685 3.315 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.177 1.177 21 C -0.016 4.016 22 C 0.290 3.710 23 O -0.375 6.375 24 O -0.287 6.287 25 C -0.058 4.058 26 H 0.237 0.763 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.393 -0.882 7.798 9.522 hybrid contribution -0.811 0.642 0.052 1.036 sum 4.582 -0.240 7.850 9.092 Atomic orbital electron populations 1.24774 0.95696 0.99747 0.99315 1.19918 0.91987 1.00983 1.01195 1.15809 0.86600 1.00591 0.94961 1.21073 0.94160 0.99348 0.97161 1.20933 0.93814 1.01367 0.98709 1.21146 0.99674 0.98328 0.93892 1.20957 0.93227 0.99334 0.99052 1.19685 0.93452 0.95056 0.94424 1.20480 1.01802 0.94335 0.96118 1.20196 0.80000 0.87787 0.82226 1.90578 1.56741 1.71894 1.27301 1.43333 1.46619 1.03256 1.24277 1.19067 0.96503 1.25855 1.05556 0.87591 1.25375 0.97090 0.96072 0.95407 1.69745 1.18711 1.44563 1.15732 0.87157 0.81334 0.79332 0.83668 1.19668 1.20598 1.17743 1.21324 0.95417 0.83586 1.01308 1.24784 0.86798 0.80669 0.78793 1.90604 1.36558 1.71268 1.39034 1.86525 1.50773 1.21581 1.69784 1.23136 0.89550 0.95932 0.97157 0.76268 0.86048 0.86054 0.86109 0.85732 0.88273 0.87512 0.91287 0.87812 0.86998 0.92364 0.92162 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 19.25 29.55 0.57 -2.37 16 2 C -0.14 -2.57 11.78 -38.84 -0.46 -3.03 16 3 C 0.02 0.37 5.72 -107.00 -0.61 -0.25 16 4 C -0.10 -1.48 9.75 -39.19 -0.38 -1.86 16 5 C -0.13 -1.71 10.03 -39.64 -0.40 -2.11 16 6 C -0.11 -1.54 10.04 -39.50 -0.40 -1.93 16 7 C -0.11 -1.75 9.67 -39.64 -0.38 -2.13 16 8 C -0.03 -0.48 4.41 -104.23 -0.46 -0.94 16 9 C -0.09 -1.79 4.03 -29.04 -0.12 -1.91 16 10 C 0.51 12.01 7.61 -10.99 -0.08 11.92 16 11 O -0.58 -14.71 15.60 5.54 0.09 -14.62 16 12 N -0.45 -11.02 1.60 -116.09 -0.19 -11.21 16 13 C -0.34 -8.85 8.89 -14.93 -0.13 -8.98 16 14 H 0.11 2.88 7.50 -52.49 -0.39 2.49 16 15 C 0.07 1.77 5.33 -17.47 -0.09 1.68 16 16 N -0.85 -23.02 13.96 55.50 0.77 -22.24 16 17 Si 0.86 19.24 25.03 -169.99 -4.26 14.99 16 18 H -0.27 -5.79 6.72 56.52 0.38 -5.41 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.25 -5.69 7.11 56.52 0.40 -5.29 16 21 C 0.11 2.46 4.82 -5.19 -0.03 2.43 16 22 C 0.45 9.97 8.02 36.01 0.29 10.26 16 23 O -0.49 -12.03 16.18 -18.75 -0.30 -12.34 16 24 O -0.37 -6.95 10.57 -39.24 -0.41 -7.37 16 25 C 0.04 0.53 10.56 101.05 1.07 1.59 16 26 H 0.22 2.78 7.80 -54.09 -0.42 2.36 16 27 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 28 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 31 H 0.10 1.91 7.96 -51.93 -0.41 1.50 16 32 H 0.11 2.19 6.98 -51.93 -0.36 1.83 16 33 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.10 2.31 3.57 -51.93 -0.19 2.12 16 35 H 0.11 2.38 7.36 -51.93 -0.38 1.99 16 36 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 37 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -32.16 339.92 -5.07 -37.23 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.27 Total: 8.06 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -1.62 Total: 2.38 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.59 Total: -33.45 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.63 Total: -34.32 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.26 Total: 14.99 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.16 -5.07 -37.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811905124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.917 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds