Wall clock time and date at job start Fri Apr 10 2020 17:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99685 * 2 1 4 4 H 1.48499 * 109.47258 * 270.00068 * 3 2 1 5 5 H 1.48503 * 109.47257 * 30.00348 * 3 2 1 6 6 H 1.48506 * 109.47165 * 150.00246 * 3 2 1 7 7 C 1.37873 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00334 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00160 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.64000 * 300.70758 * 9 7 2 11 11 C 1.55154 * 110.72123 * 177.56048 * 9 7 2 12 12 C 1.54912 * 101.57898 * 205.95931 * 11 9 7 13 13 N 1.47419 * 104.83376 * 37.01200 * 12 11 9 14 14 C 1.34783 * 125.64807 * 155.90187 * 13 12 11 15 15 O 1.21653 * 119.99675 * 177.08998 * 14 13 12 16 16 C 1.47051 * 119.99921 * 357.09664 * 14 13 12 17 17 C 1.37593 * 119.93274 * 23.70777 * 16 14 13 18 18 C 1.39943 * 120.01581 * 179.81383 * 17 16 14 19 19 C 1.36215 * 119.91270 * 0.44090 * 18 17 16 20 20 C 1.40914 * 119.80285 * 359.78990 * 19 18 17 21 21 N 1.32580 * 132.18743 * 179.97438 * 20 19 18 22 22 C 1.33231 * 109.13871 * 180.02562 * 21 20 19 23 23 C 1.35448 * 108.57991 * 359.97438 * 22 21 20 24 24 N 1.36248 * 107.17781 * 0.02562 * 23 22 21 25 25 C 1.47026 * 108.70382 * 335.87135 * 13 12 11 26 26 H 0.97002 * 120.00426 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00203 * 56.85363 * 10 9 7 28 28 H 1.08992 * 111.00545 * 324.03162 * 11 9 7 29 29 H 1.09003 * 111.00344 * 87.85244 * 11 9 7 30 30 H 1.09002 * 110.36451 * 155.85283 * 12 11 9 31 31 H 1.08996 * 110.36943 * 278.17064 * 12 11 9 32 32 H 1.07998 * 119.99458 * 359.97438 * 17 16 14 33 33 H 1.07994 * 120.04326 * 180.22727 * 18 17 16 34 34 H 1.08000 * 120.09357 * 179.81386 * 19 18 17 35 35 H 1.07998 * 125.70677 * 180.02562 * 22 21 20 36 36 H 1.08000 * 126.41221 * 180.02562 * 23 22 21 37 37 H 1.08999 * 109.88190 * 241.63991 * 25 13 12 38 38 H 1.08995 * 109.87996 * 120.47778 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.4083 -2.5943 1.1495 11 6 2.2324 -3.6994 -0.0630 12 6 1.3485 -4.7898 -0.7184 13 7 0.5274 -4.0666 -1.7063 14 6 -0.0385 -4.6070 -2.8037 15 8 -0.7423 -3.9244 -3.5239 16 6 0.1946 -6.0217 -3.1303 17 6 0.5483 -6.9063 -2.1375 18 6 0.7668 -8.2537 -2.4456 19 6 0.6376 -8.6863 -3.7308 20 6 0.2798 -7.7746 -4.7440 21 7 0.0896 -7.9219 -6.0477 22 6 -0.2401 -6.7445 -6.5769 23 6 -0.2629 -5.8184 -5.5887 24 7 0.0635 -6.4576 -4.4306 25 6 0.4274 -2.6584 -1.2958 26 1 -0.4851 0.8400 0.0004 27 1 -0.2238 -1.8676 1.2351 28 1 3.0943 -3.4672 -0.6883 29 1 2.5468 -3.9994 0.9367 30 1 1.9706 -5.5347 -1.2146 31 1 0.7126 -5.2631 0.0298 32 1 0.6549 -6.5611 -1.1197 33 1 1.0409 -8.9491 -1.6661 34 1 0.8084 -9.7249 -3.9724 35 1 -0.4544 -6.5597 -7.6192 36 1 -0.4960 -4.7696 -5.6983 37 1 -0.6146 -2.4005 -1.1065 38 1 0.8348 -2.0151 -2.0757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015147.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:43 Heat of formation + Delta-G solvation = 7.619173 kcal Electronic energy + Delta-G solvation = -24499.261939 eV Core-core repulsion = 20921.981365 eV Total energy + Delta-G solvation = -3577.280574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.92372 -41.31525 -39.12178 -38.21782 -36.27805 -34.60243 -34.22797 -32.33884 -31.41419 -30.03298 -29.41829 -27.31194 -25.92984 -24.09578 -23.69486 -23.10698 -21.52605 -20.80888 -19.22843 -18.71634 -18.67022 -17.62800 -17.34555 -17.09532 -16.74657 -16.48055 -16.24572 -16.05947 -15.15004 -14.88472 -14.84820 -14.81224 -14.59484 -14.00803 -13.75743 -13.50543 -13.32658 -13.12747 -12.87790 -12.82541 -12.40565 -12.35940 -12.28884 -12.14299 -12.03033 -11.43754 -11.22464 -11.17740 -10.68222 -10.34344 -9.94489 -9.82758 -8.95213 -8.30944 -6.46803 -0.75966 0.23642 1.10681 1.38754 1.41416 1.43175 1.51236 1.91415 1.96629 2.35134 2.46238 2.95934 3.04627 3.25869 3.51986 3.66314 3.80182 3.99247 4.05837 4.13202 4.27923 4.36935 4.40546 4.46113 4.50443 4.61433 4.87129 4.91780 4.95547 5.03072 5.06915 5.12587 5.31639 5.41081 5.45898 5.55602 5.71010 5.86215 5.99622 6.34044 6.60867 6.70806 6.79574 7.25054 7.32785 8.74808 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.025522 B = 0.003988 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.811097 B = 7018.920390 C = 7651.800214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.028 3.972 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.559 4.559 8 H 0.070 0.930 9 C 0.235 3.765 10 O -0.585 6.585 11 C -0.113 4.113 12 C 0.086 3.914 13 N -0.595 5.595 14 C 0.557 3.443 15 O -0.585 6.585 16 C 0.005 3.995 17 C -0.081 4.081 18 C -0.095 4.095 19 C -0.053 4.053 20 C 0.188 3.812 21 N -0.512 5.512 22 C 0.028 3.972 23 C -0.103 4.103 24 N -0.345 5.345 25 C 0.121 3.879 26 H 0.271 0.729 27 H 0.378 0.622 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.194 0.806 33 H 0.206 0.794 34 H 0.188 0.812 35 H 0.211 0.789 36 H 0.172 0.828 37 H 0.036 0.964 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 -16.625 -1.854 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.173 4.173 3 Si 0.786 3.214 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.597 4.597 8 H 0.088 0.912 9 C 0.194 3.806 10 O -0.393 6.393 11 C -0.150 4.150 12 C -0.034 4.034 13 N -0.326 5.326 14 C 0.346 3.654 15 O -0.468 6.468 16 C -0.100 4.100 17 C -0.102 4.102 18 C -0.118 4.118 19 C -0.073 4.073 20 C -0.053 4.053 21 N -0.232 5.232 22 C -0.124 4.124 23 C -0.236 4.236 24 N -0.017 5.017 25 C -0.002 4.002 26 H 0.080 0.920 27 H 0.228 0.772 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.210 0.790 33 H 0.223 0.777 34 H 0.205 0.795 35 H 0.228 0.772 36 H 0.190 0.810 37 H 0.054 0.946 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.688 -17.375 -2.617 17.954 hybrid contribution -0.680 3.240 -0.210 3.317 sum 3.009 -14.136 -2.827 14.726 Atomic orbital electron populations 1.69728 1.07084 1.28584 1.50201 1.25780 0.95745 1.02757 0.93059 0.85511 0.78986 0.78916 0.77996 1.20748 1.20762 1.18737 1.21876 0.94110 0.91319 1.52362 0.91226 1.19683 0.86609 0.93778 0.80502 1.86065 1.53574 1.52337 1.47318 1.22807 0.96868 0.93215 1.02154 1.23160 0.93638 0.95878 0.90771 1.48591 1.49257 1.11923 1.22829 1.17727 0.80389 0.86432 0.80842 1.90776 1.40627 1.63775 1.51592 1.20001 1.11364 0.94305 0.84372 1.22622 0.93986 0.93735 0.99876 1.21584 0.98456 0.94594 0.97162 1.21022 0.96560 1.00028 0.89650 1.21805 1.06879 0.82907 0.93706 1.70638 1.22344 1.26154 1.04102 1.22991 1.01444 0.87232 1.00711 1.23041 1.14760 1.01412 0.84396 1.42667 1.42316 1.10882 1.05844 1.22682 0.99904 0.78704 0.98912 0.91988 0.77220 0.89843 0.88030 0.86639 0.88214 0.78988 0.77729 0.79487 0.77239 0.81040 0.94591 0.94634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.38 10.97 21.44 0.24 -48.15 16 2 C 0.03 1.40 5.26 84.65 0.45 1.84 16 3 Si 0.96 40.84 29.54 68.60 2.03 42.87 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.56 -27.88 8.12 25.60 0.21 -27.67 16 8 H 0.07 3.37 7.77 -2.91 -0.02 3.35 16 9 C 0.23 10.57 0.86 -10.35 -0.01 10.56 16 10 O -0.58 -27.41 13.09 -148.98 -1.95 -29.36 16 11 C -0.11 -3.76 6.22 31.99 0.20 -3.56 16 12 C 0.09 2.35 4.98 86.86 0.43 2.79 16 13 N -0.60 -22.62 3.33 -816.07 -2.71 -25.33 16 14 C 0.56 21.95 7.62 86.55 0.66 22.61 16 15 O -0.59 -28.00 15.44 -4.20 -0.06 -28.07 16 16 C 0.01 0.17 6.65 40.37 0.27 0.43 16 17 C -0.08 -1.60 7.97 22.53 0.18 -1.42 16 18 C -0.10 -1.23 10.04 22.21 0.22 -1.00 16 19 C -0.05 -0.92 10.09 22.45 0.23 -0.69 16 20 C 0.19 5.28 7.80 134.09 1.05 6.32 16 21 N -0.51 -15.41 11.31 -194.29 -2.20 -17.61 16 22 C 0.03 0.81 11.83 83.84 0.99 1.80 16 23 C -0.10 -3.40 10.83 83.36 0.90 -2.50 16 24 N -0.35 -11.16 2.97 -339.79 -1.01 -12.17 16 25 C 0.12 5.70 5.39 86.73 0.47 6.16 16 26 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 27 H 0.38 18.96 7.17 -74.06 -0.53 18.43 16 28 H 0.08 2.71 8.04 -2.39 -0.02 2.69 16 29 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.12 2.26 6.03 -2.39 -0.01 2.24 16 31 H 0.10 2.33 7.32 -2.39 -0.02 2.31 16 32 H 0.19 2.95 4.15 -2.91 -0.01 2.94 16 33 H 0.21 0.50 8.06 -2.91 -0.02 0.48 16 34 H 0.19 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.21 4.31 8.06 -2.91 -0.02 4.28 16 36 H 0.17 6.06 6.99 -2.91 -0.02 6.04 16 37 H 0.04 1.91 8.01 -2.39 -0.02 1.89 16 38 H 0.04 1.88 7.82 -2.39 -0.02 1.86 16 Total: -1.00 -71.43 315.56 1.15 -70.28 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.59 Total: 31.88 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 6.24 Total: 15.66 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -5.68 Total: -103.25 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -2.01 Total: -57.43 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -71.43 1.15 -70.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015147.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.896 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds