Wall clock time and date at job start Fri Apr 10 2020 17:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99695 * 2 1 4 4 H 1.48501 * 109.47315 * 240.00278 * 3 2 1 5 5 H 1.48496 * 109.47413 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47085 * 120.00432 * 3 2 1 7 7 C 1.37877 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99654 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88669 * 59.30392 * 9 7 2 11 11 C 1.55152 * 111.00143 * 183.17878 * 9 7 2 12 12 C 1.54322 * 102.94247 * 153.61464 * 11 9 7 13 13 N 1.47028 * 107.27085 * 337.80919 * 12 11 9 14 14 C 1.34773 * 125.64630 * 178.97648 * 13 12 11 15 15 O 1.21653 * 119.99829 * 174.83180 * 14 13 12 16 16 C 1.47046 * 120.00318 * 354.82980 * 14 13 12 17 17 C 1.37604 * 119.93008 * 7.92651 * 16 14 13 18 18 C 1.39945 * 120.01069 * 179.72935 * 17 16 14 19 19 C 1.36217 * 119.92019 * 0.56223 * 18 17 16 20 20 C 1.40922 * 119.79740 * 359.71056 * 19 18 17 21 21 N 1.32574 * 132.18388 * 180.02562 * 20 19 18 22 22 C 1.33240 * 109.13985 * 179.97438 * 21 20 19 23 23 C 1.35457 * 108.57495 * 0.02562 * 22 21 20 24 24 N 1.36253 * 107.17582 * 359.97438 * 23 22 21 25 25 C 1.47525 * 108.71080 * 358.94107 * 13 12 11 26 26 H 0.96998 * 120.00164 * 359.97438 * 1 2 3 27 27 H 0.96705 * 113.99849 * 300.69970 * 10 9 7 28 28 H 1.08997 * 110.72571 * 271.98203 * 11 9 7 29 29 H 1.09003 * 110.72073 * 35.25236 * 11 9 7 30 30 H 1.08998 * 109.88290 * 97.22305 * 12 11 9 31 31 H 1.09003 * 109.88584 * 218.23778 * 12 11 9 32 32 H 1.07996 * 119.99486 * 0.02562 * 17 16 14 33 33 H 1.08001 * 120.03633 * 180.27701 * 18 17 16 34 34 H 1.07992 * 120.09946 * 179.72833 * 19 18 17 35 35 H 1.08000 * 125.71496 * 180.02562 * 22 21 20 36 36 H 1.07995 * 126.41147 * 179.97438 * 23 22 21 37 37 H 1.08999 * 110.37180 * 265.30438 * 25 13 12 38 38 H 1.08998 * 110.40596 * 142.95660 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4056 -2.5993 -1.1483 11 6 2.2255 -3.7039 0.0791 12 6 1.3643 -4.8021 0.7377 13 7 0.2766 -4.1282 1.4619 14 6 -0.7037 -4.7411 2.1545 15 8 -1.5004 -4.0812 2.7946 16 6 -0.8105 -6.2076 2.1363 17 6 0.1805 -6.9610 1.5501 18 6 0.0834 -8.3570 1.5368 19 6 -0.9987 -8.9681 2.0947 20 6 -2.0131 -8.1907 2.6885 21 7 -3.1481 -8.5179 3.2905 22 6 -3.7681 -7.4072 3.6871 23 6 -3.0130 -6.3407 3.3305 24 7 -1.9055 -6.8242 2.7011 25 6 0.4364 -2.6700 1.3058 26 1 -0.4850 0.8400 0.0004 27 1 -0.2530 -1.8944 -1.2143 28 1 2.5437 -4.0092 -0.9176 29 1 3.0864 -3.4630 0.7029 30 1 0.9494 -5.4571 -0.0284 31 1 1.9714 -5.3826 1.4324 32 1 1.0358 -6.4750 1.1043 33 1 0.8632 -8.9488 1.0808 34 1 -1.0787 -10.0449 2.0822 35 1 -4.7143 -7.3644 4.2061 36 1 -3.2453 -5.3016 3.5112 37 1 0.9848 -2.2556 2.1518 38 1 -0.5371 -2.1889 1.2115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015149.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:47 Heat of formation + Delta-G solvation = 40.218241 kcal Electronic energy + Delta-G solvation = -24547.723156 eV Core-core repulsion = 20971.856184 eV Total energy + Delta-G solvation = -3575.866972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.79709 -39.88433 -37.50309 -37.09299 -34.62310 -33.49656 -32.32023 -30.98155 -30.20347 -28.85655 -27.88599 -25.67386 -24.62393 -22.86410 -22.45647 -21.93097 -19.89262 -19.49302 -17.72244 -17.44791 -17.26317 -16.19349 -15.99052 -15.65135 -15.38052 -15.13249 -14.88833 -14.43775 -13.91609 -13.58447 -13.45408 -13.24135 -13.10346 -12.63733 -12.57074 -12.13896 -11.80301 -11.64299 -11.42016 -11.11055 -11.05913 -10.87227 -10.72958 -10.60494 -10.34229 -10.19379 -9.73195 -9.52810 -8.84929 -8.81176 -8.58607 -8.14534 -7.81546 -6.40754 -4.51084 0.30214 1.27019 2.38520 2.63056 3.14439 3.18352 3.21507 3.22285 3.35856 3.58224 4.15748 4.18906 4.34887 4.57910 4.72109 4.84765 4.91792 5.09589 5.29708 5.36972 5.45652 5.55532 5.57008 5.72130 5.75838 5.89343 5.92255 6.00931 6.27313 6.38752 6.52005 6.62371 6.64009 6.67774 6.98165 7.05574 7.15895 7.61462 7.80268 7.84877 7.85220 8.28600 8.52732 9.17350 9.26761 10.66608 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.028798 B = 0.003936 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.044654 B = 7111.512552 C = 7777.366436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.250 3.750 10 O -0.583 6.583 11 C -0.119 4.119 12 C 0.085 3.915 13 N -0.590 5.590 14 C 0.564 3.436 15 O -0.539 6.539 16 C 0.047 3.953 17 C -0.134 4.134 18 C -0.116 4.116 19 C -0.058 4.058 20 C 0.200 3.800 21 N -0.489 5.489 22 C 0.017 3.983 23 C -0.064 4.064 24 N -0.336 5.336 25 C 0.095 3.905 26 H 0.273 0.727 27 H 0.385 0.615 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.191 0.809 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.182 0.818 36 H 0.192 0.808 37 H 0.068 0.932 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 -13.013 2.366 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.392 6.392 11 C -0.157 4.157 12 C -0.037 4.037 13 N -0.321 5.321 14 C 0.351 3.649 15 O -0.418 6.418 16 C -0.059 4.059 17 C -0.155 4.155 18 C -0.139 4.139 19 C -0.078 4.078 20 C -0.042 4.042 21 N -0.209 5.209 22 C -0.135 4.135 23 C -0.197 4.197 24 N -0.007 5.007 25 C -0.025 4.025 26 H 0.083 0.917 27 H 0.236 0.764 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.207 0.793 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.199 0.801 36 H 0.209 0.791 37 H 0.086 0.914 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.886 -13.810 2.766 14.112 hybrid contribution 0.203 2.225 0.132 2.238 sum 1.089 -11.585 2.897 11.991 Atomic orbital electron populations 1.69626 1.06070 1.28315 1.49238 1.25085 0.95049 0.99900 0.93099 0.86423 0.79526 0.81886 0.78890 1.19897 1.21022 1.19948 1.21419 0.93717 0.89884 1.52904 0.91328 1.19607 0.86101 0.91846 0.81515 1.86089 1.51474 1.55083 1.46578 1.22709 0.97749 0.94672 1.00587 1.22585 0.89050 0.96827 0.95265 1.48564 1.24958 1.10366 1.48238 1.17116 0.81893 0.85095 0.80815 1.90787 1.42162 1.65979 1.42902 1.20290 0.89374 0.93874 1.02345 1.23021 0.99722 0.94791 0.97983 1.21024 0.98498 0.94050 1.00337 1.20417 0.90810 1.00282 0.96296 1.20998 0.97460 0.80431 1.05267 1.70614 1.04621 1.29106 1.16581 1.22568 1.00859 0.87184 1.02848 1.23165 0.88412 1.02226 1.05944 1.42579 1.14167 1.08544 1.35441 1.23502 1.03198 0.75090 1.00756 0.91721 0.76380 0.90110 0.89938 0.90567 0.91079 0.79326 0.83386 0.83054 0.80085 0.79069 0.91422 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.73 10.69 55.43 0.59 -22.14 16 2 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 3 Si 0.91 19.42 29.54 -169.99 -5.02 14.40 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -13.14 8.26 -34.44 -0.28 -13.42 16 8 H 0.07 1.62 7.78 -52.49 -0.41 1.21 16 9 C 0.25 5.55 0.88 -89.63 -0.08 5.47 16 10 O -0.58 -13.87 13.17 -35.23 -0.46 -14.33 16 11 C -0.12 -2.06 6.13 -24.90 -0.15 -2.21 16 12 C 0.09 1.27 4.87 -3.06 -0.01 1.25 16 13 N -0.59 -11.14 3.33 -179.26 -0.60 -11.74 16 14 C 0.56 10.95 7.79 -12.69 -0.10 10.85 16 15 O -0.54 -12.01 14.97 5.23 0.08 -11.94 16 16 C 0.05 0.78 6.78 -81.86 -0.55 0.22 16 17 C -0.13 -1.68 8.60 -39.17 -0.34 -2.02 16 18 C -0.12 -1.16 10.04 -39.67 -0.40 -1.56 16 19 C -0.06 -0.67 10.09 -39.29 -0.40 -1.07 16 20 C 0.20 3.10 7.80 -156.03 -1.22 1.89 16 21 N -0.49 -7.86 11.31 -12.76 -0.14 -8.01 16 22 C 0.02 0.25 11.83 -17.93 -0.21 0.04 16 23 C -0.06 -1.04 10.80 -16.58 -0.18 -1.22 16 24 N -0.34 -5.64 2.97 -58.75 -0.17 -5.82 16 25 C 0.10 2.11 5.49 -2.48 -0.01 2.10 16 26 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 27 H 0.39 9.58 7.25 45.56 0.33 9.91 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 30 H 0.08 1.03 6.68 -51.93 -0.35 0.68 16 31 H 0.07 0.82 6.80 -51.93 -0.35 0.47 16 32 H 0.19 2.02 2.65 -62.02 -0.16 1.85 16 33 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.18 1.96 8.06 -52.49 -0.42 1.53 16 36 H 0.19 3.14 6.70 -52.49 -0.35 2.79 16 37 H 0.07 1.54 8.03 -51.93 -0.42 1.13 16 38 H 0.09 2.23 7.53 -51.93 -0.39 1.84 16 LS Contribution 314.01 15.07 4.73 4.73 Total: -1.00 -30.11 314.01 -8.37 -38.49 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -3.34 Total: 14.32 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -4.03 Total: 2.02 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.32 Total: -47.70 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.39 Total: -26.27 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.11 -8.37 -38.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015149.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.706 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds