Wall clock time and date at job start Fri Apr 10 2020 17:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99950 * 2 1 4 4 H 1.48499 * 109.47324 * 270.00559 * 3 2 1 5 5 H 1.48508 * 109.46763 * 30.00488 * 3 2 1 6 6 H 1.48503 * 109.46944 * 150.00176 * 3 2 1 7 7 C 1.37875 * 120.00509 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00712 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99461 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.88584 * 303.87714 * 9 7 2 11 11 C 1.55157 * 111.00018 * 179.97438 * 9 7 2 12 12 C 1.54323 * 102.94214 * 206.38497 * 11 9 7 13 13 N 1.47027 * 107.27235 * 22.19215 * 12 11 9 14 14 C 1.34768 * 125.65104 * 181.01961 * 13 12 11 15 15 O 1.21795 * 120.00206 * 184.62704 * 14 13 12 16 16 C 1.41702 * 119.99883 * 4.63029 * 14 13 12 17 17 C 1.39179 * 125.87769 * 354.11572 * 16 14 13 18 18 C 1.38077 * 107.68016 * 180.02562 * 17 16 14 19 19 C 1.39506 * 107.57252 * 0.02562 * 18 17 16 20 20 C 1.40618 * 132.41836 * 180.31094 * 19 18 17 21 21 C 1.36292 * 119.15849 * 180.16884 * 20 19 18 22 22 C 1.39967 * 120.04117 * 359.50905 * 21 20 19 23 23 N 1.30642 * 120.98925 * 0.23024 * 22 21 20 24 24 N 1.37159 * 108.19829 * 359.97438 * 19 18 17 25 25 C 1.47423 * 108.69711 * 1.29034 * 13 12 11 26 26 H 0.96997 * 119.99924 * 359.97438 * 1 2 3 27 27 H 0.96709 * 113.99677 * 56.12753 * 10 9 7 28 28 H 1.09001 * 110.71916 * 88.02474 * 11 9 7 29 29 H 1.08993 * 110.72356 * 324.75059 * 11 9 7 30 30 H 1.09001 * 109.88648 * 262.77894 * 12 11 9 31 31 H 1.08998 * 110.01614 * 141.68692 * 12 11 9 32 32 H 1.08008 * 126.16043 * 0.02562 * 17 16 14 33 33 H 1.08000 * 126.21946 * 180.02562 * 18 17 16 34 34 H 1.08005 * 120.41930 * 359.95638 * 20 19 18 35 35 H 1.08004 * 119.97456 * 179.77951 * 21 20 19 36 36 H 1.08000 * 119.50351 * 180.25271 * 22 21 20 37 37 H 1.09008 * 110.36922 * 94.48130 * 25 13 12 38 38 H 1.09007 * 110.36754 * 216.80064 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3523 -2.5685 1.1082 11 6 2.2275 -3.7049 -0.0018 12 6 1.3974 -4.8211 -0.6701 13 7 0.3453 -4.1678 -1.4625 14 6 -0.6018 -4.7999 -2.1834 15 8 -1.3744 -4.1565 -2.8709 16 6 -0.6989 -6.2129 -2.1415 17 6 0.1842 -7.0724 -1.4945 18 6 -0.2644 -8.3628 -1.6943 19 6 -1.4244 -8.2908 -2.4660 20 6 -2.2966 -9.2761 -2.9617 21 6 -3.3726 -8.8964 -3.7071 22 6 -3.6046 -7.5398 -3.9623 23 7 -2.7996 -6.6210 -3.4993 24 7 -1.6800 -6.9699 -2.7329 25 6 0.5020 -2.7068 -1.3430 26 1 -0.4850 0.8400 0.0004 27 1 -0.2773 -1.8356 1.1506 28 1 2.4983 -3.9830 1.0167 29 1 3.1168 -3.4805 -0.5908 30 1 0.9466 -5.4554 0.0932 31 1 2.0338 -5.4204 -1.3212 32 1 1.0623 -6.7821 -0.9366 33 1 0.1985 -9.2644 -1.3211 34 1 -2.1143 -10.3208 -2.7572 35 1 -4.0490 -9.6424 -4.0974 36 1 -4.4621 -7.2484 -4.5506 37 1 1.0924 -2.3194 -2.1734 38 1 -0.4737 -2.2219 -1.3114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016645.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:50 Heat of formation + Delta-G solvation = 44.581540 kcal Electronic energy + Delta-G solvation = -24334.522107 eV Core-core repulsion = 20758.844342 eV Total energy + Delta-G solvation = -3575.677765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96243 -39.30694 -37.37120 -36.84539 -34.32434 -33.30457 -32.12891 -30.86212 -30.05128 -28.89720 -27.72470 -25.59020 -24.18129 -23.64306 -22.13684 -20.96672 -19.84103 -19.44841 -17.41857 -17.25271 -17.10958 -16.20396 -15.83800 -15.51792 -15.19097 -14.77883 -14.74771 -14.23888 -13.79687 -13.40071 -13.10380 -13.03903 -12.97905 -12.64581 -12.38635 -12.01557 -11.91893 -11.52058 -11.29822 -11.02203 -10.85559 -10.67586 -10.55252 -10.50729 -10.47339 -10.15608 -9.42691 -9.30915 -8.91642 -8.66630 -8.36119 -7.90462 -7.59706 -6.27339 -4.37010 0.40145 1.00741 1.90946 2.37832 3.16892 3.21918 3.29584 3.32057 3.65842 3.88145 4.25811 4.31600 4.36838 4.49407 4.77940 4.98511 5.08648 5.15543 5.29335 5.41459 5.54267 5.62024 5.66483 5.82135 5.84543 5.95616 6.04328 6.14130 6.24142 6.52373 6.57308 6.73314 6.74809 6.88205 7.06155 7.28492 7.36593 7.62821 7.76080 8.00997 8.23750 8.66067 8.80638 9.32848 9.48228 10.79941 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.031548 B = 0.003701 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.330710 B = 7563.030815 C = 8142.199984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.583 6.583 11 C -0.120 4.120 12 C 0.096 3.904 13 N -0.598 5.598 14 C 0.583 3.417 15 O -0.541 6.541 16 C -0.001 4.001 17 C -0.130 4.130 18 C -0.170 4.170 19 C -0.010 4.010 20 C -0.016 4.016 21 C -0.203 4.203 22 C 0.117 3.883 23 N -0.238 5.238 24 N -0.220 5.220 25 C 0.098 3.902 26 H 0.271 0.729 27 H 0.386 0.614 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.178 0.822 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.193 0.807 37 H 0.062 0.938 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.499 -18.806 -4.480 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.158 4.158 12 C -0.027 4.027 13 N -0.331 5.331 14 C 0.372 3.628 15 O -0.420 6.420 16 C -0.119 4.119 17 C -0.154 4.154 18 C -0.196 4.196 19 C -0.121 4.121 20 C -0.043 4.043 21 C -0.226 4.226 22 C -0.076 4.076 23 N -0.046 5.046 24 N 0.018 4.982 25 C -0.024 4.024 26 H 0.081 0.919 27 H 0.238 0.762 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.195 0.805 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.210 0.790 37 H 0.080 0.920 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.906 -17.689 -4.926 18.591 hybrid contribution -0.106 0.454 -0.235 0.522 sum -3.012 -17.235 -5.162 18.242 Atomic orbital electron populations 1.69570 1.06053 1.28007 1.49771 1.25090 0.95024 0.99823 0.93322 0.86384 0.79766 0.82356 0.78285 1.20408 1.21002 1.19654 1.21506 0.93721 0.90076 1.52295 0.91394 1.19629 0.85746 0.91727 0.82037 1.86063 1.51084 1.53014 1.49199 1.22675 0.97897 0.94870 1.00322 1.22421 0.89541 0.96622 0.94139 1.48396 1.28603 1.09600 1.46476 1.15319 0.81520 0.84975 0.80952 1.90868 1.42367 1.67665 1.41123 1.19216 0.92570 0.93219 1.06886 1.22263 1.00428 0.91844 1.00876 1.21043 0.96131 0.98415 1.04013 1.19449 1.00891 0.84448 1.07308 1.20865 0.91420 0.99274 0.92710 1.21412 1.00629 0.96799 1.03719 1.24127 0.97251 0.90803 0.95411 1.76206 0.95020 1.26482 1.06875 1.45454 1.15604 1.05613 1.31563 1.23351 1.02592 0.75926 1.00488 0.91863 0.76171 0.90510 0.90344 0.91354 0.92038 0.80518 0.82799 0.82929 0.83498 0.79016 0.92015 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.14 10.72 55.43 0.59 -23.54 16 2 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.96 8.25 -34.44 -0.28 -14.24 16 8 H 0.07 1.71 7.76 -52.49 -0.41 1.30 16 9 C 0.25 6.07 0.89 -89.50 -0.08 5.99 16 10 O -0.58 -15.11 13.19 -35.23 -0.46 -15.58 16 11 C -0.12 -2.34 6.12 -24.90 -0.15 -2.49 16 12 C 0.10 1.68 4.94 -3.06 -0.02 1.67 16 13 N -0.60 -13.01 3.32 -173.74 -0.58 -13.59 16 14 C 0.58 13.20 7.64 -14.94 -0.11 13.09 16 15 O -0.54 -14.21 16.78 5.10 0.09 -14.13 16 16 C 0.00 -0.01 6.82 -83.74 -0.57 -0.58 16 17 C -0.13 -1.92 9.15 -39.29 -0.36 -2.28 16 18 C -0.17 -2.10 10.92 -39.17 -0.43 -2.53 16 19 C -0.01 -0.13 6.80 -84.11 -0.57 -0.71 16 20 C -0.02 -0.15 10.11 -39.38 -0.40 -0.55 16 21 C -0.20 -1.71 10.04 -39.63 -0.40 -2.11 16 22 C 0.12 1.30 11.29 -17.41 -0.20 1.10 16 23 N -0.24 -4.07 11.33 30.61 0.35 -3.72 16 24 N -0.22 -3.90 4.01 -8.28 -0.03 -3.93 16 25 C 0.10 2.41 5.62 -2.41 -0.01 2.40 16 26 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.39 10.42 6.93 45.56 0.32 10.74 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.08 1.42 8.01 -51.93 -0.42 1.01 16 30 H 0.07 1.12 6.69 -51.93 -0.35 0.77 16 31 H 0.06 0.89 6.99 -51.93 -0.36 0.53 16 32 H 0.18 2.24 4.20 -52.48 -0.22 2.02 16 33 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 34 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 36 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.06 1.55 8.04 -51.92 -0.42 1.13 16 38 H 0.08 2.28 7.69 -51.92 -0.40 1.89 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -34.40 319.10 -7.44 -41.84 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -3.50 Total: 11.96 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -3.68 Total: 0.50 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.33 Total: -44.78 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.38 Total: -29.71 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.40 -7.44 -41.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016645.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.420 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds