Wall clock time and date at job start Fri Apr 10 2020 17:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47200 * 142.01074 * 3 2 1 5 5 C 1.36945 * 119.99750 * 272.09864 * 4 3 2 6 6 H 1.07994 * 119.99444 * 186.77750 * 5 4 3 7 7 C 1.38805 * 119.99898 * 6.77467 * 5 4 3 8 8 N 1.31616 * 120.00354 * 26.35200 * 7 5 4 9 9 Si 1.86803 * 119.99794 * 206.35543 * 7 5 4 10 10 H 1.48503 * 109.47052 * 90.00042 * 9 7 5 11 11 H 1.48498 * 109.47017 * 209.99647 * 9 7 5 12 12 H 1.48496 * 109.47398 * 329.99851 * 9 7 5 13 13 S 1.65601 * 120.00290 * 92.09713 * 4 3 2 14 14 O 1.42100 * 104.27604 * 333.92774 * 13 4 3 15 15 O 1.42097 * 104.27561 * 206.07380 * 13 4 3 16 16 C 1.81394 * 104.44877 * 89.99922 * 13 4 3 17 17 C 1.53006 * 109.46891 * 187.81702 * 16 13 4 18 18 C 1.52994 * 112.85007 * 301.90466 * 17 16 13 19 19 O 1.42901 * 109.47450 * 300.51427 * 18 17 16 20 20 C 1.42901 * 113.99936 * 179.97438 * 19 18 17 21 21 C 1.53785 * 113.61033 * 170.70999 * 17 16 13 22 22 C 1.53955 * 87.01761 * 220.04734 * 21 17 16 23 23 C 1.53781 * 87.11171 * 25.36699 * 22 21 17 24 24 H 4.40644 * 5.51516 * 180.02562 * 4 1 2 25 25 H 1.08994 * 109.47190 * 22.00816 * 3 2 1 26 26 H 1.09003 * 109.47033 * 262.00977 * 3 2 1 27 27 H 0.96999 * 120.00412 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.47205 * 67.81835 * 16 13 4 29 29 H 1.09000 * 109.47583 * 307.82021 * 16 13 4 30 30 H 1.09000 * 109.47258 * 60.51996 * 18 17 16 31 31 H 1.08997 * 109.47194 * 180.51530 * 18 17 16 32 32 H 1.08995 * 109.46966 * 60.00644 * 20 19 18 33 33 H 1.08997 * 109.47163 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.47580 * 300.00505 * 20 19 18 35 35 H 1.08996 * 113.61454 * 334.56830 * 21 17 16 36 36 H 1.09005 * 113.61286 * 105.47190 * 21 17 16 37 37 H 1.08999 * 113.54185 * 270.81267 * 22 21 17 38 38 H 1.09003 * 113.73991 * 139.94193 * 22 21 17 39 39 H 1.08996 * 113.61304 * 220.09268 * 23 22 21 40 40 H 1.08997 * 113.69543 * 89.19018 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0894 -0.8502 5 6 3.3212 0.8802 -2.1905 6 1 3.7829 1.6452 -2.7970 7 6 2.9179 -0.3152 -2.7693 8 7 1.9387 -1.0101 -2.2302 9 14 3.7648 -0.9378 -4.3135 10 1 4.9155 -1.7968 -3.9349 11 1 2.8020 -1.7282 -5.1218 12 1 4.2504 0.2166 -5.1115 13 16 3.4587 2.5732 -0.1904 14 8 2.6216 2.6379 0.9560 15 8 3.2927 3.4811 -1.2709 16 6 5.2027 2.4788 0.2994 17 6 5.5752 3.7269 1.1022 18 6 5.3385 5.0245 0.3271 19 8 6.1205 5.0144 -0.8689 20 6 5.9713 6.1877 -1.6709 21 6 6.9639 3.6456 1.7581 22 6 6.3343 4.3254 2.9876 23 6 4.9888 3.7426 2.5238 24 1 -1.0502 -0.0001 0.0003 25 1 3.0097 -0.9519 -0.3851 26 1 3.0093 0.1437 1.0177 27 1 1.6566 -1.8452 -2.6349 28 1 5.8278 2.4200 -0.5917 29 1 5.3603 1.5917 0.9129 30 1 4.2824 5.1067 0.0700 31 1 5.6294 5.8745 0.9441 32 1 6.2751 7.0621 -1.0955 33 1 6.5963 6.1022 -2.5597 34 1 4.9283 6.2936 -1.9694 35 1 7.2986 2.6256 1.9467 36 1 7.7183 4.2545 1.2599 37 1 6.3743 5.4140 2.9513 38 1 6.6808 3.9205 3.9384 39 1 4.1512 4.4297 2.6428 40 1 4.7814 2.7492 2.9215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845926123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:57 Heat of formation + Delta-G solvation = -17.570729 kcal Electronic energy + Delta-G solvation = -24058.073152 eV Core-core repulsion = 20582.851462 eV Total energy + Delta-G solvation = -3475.221690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -39.73237 -36.96153 -36.16250 -35.97088 -34.83186 -31.72382 -30.93809 -30.37722 -27.50282 -26.40154 -25.80739 -25.23958 -23.70560 -22.45096 -18.63253 -18.33002 -17.83777 -17.07342 -16.47803 -16.23681 -15.78833 -15.67133 -15.09410 -14.74046 -14.48096 -14.30375 -13.90972 -13.49463 -13.18939 -12.87712 -12.57953 -12.33910 -12.21250 -11.88630 -11.64609 -11.43009 -11.25750 -11.22339 -11.03542 -10.89724 -10.79800 -10.68674 -10.43976 -10.38186 -10.15038 -10.11019 -9.79248 -9.49472 -9.26912 -9.01731 -8.66966 -8.07066 -6.21994 -3.73637 1.27922 3.23369 3.31212 3.33738 3.67949 3.76981 4.24962 4.37206 4.48837 4.57103 4.60971 4.74204 4.84096 4.95414 5.02730 5.08554 5.29679 5.31584 5.44429 5.50984 5.59449 5.63509 5.73032 5.79266 5.84141 5.85808 5.93295 5.98284 6.07137 6.18238 6.25917 6.35310 6.48746 6.81304 7.09230 7.27593 7.35325 7.61100 8.41530 8.94981 9.11808 9.32333 10.76492 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.016660 B = 0.006130 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.291595 B = 4566.910070 C = 5379.278373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.093 4.093 3 C 0.251 3.749 4 N -0.843 5.843 5 C -0.318 4.318 6 H 0.112 0.888 7 C 0.043 3.957 8 N -0.850 5.850 9 Si 0.901 3.099 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.270 1.270 13 S 2.576 3.424 14 O -0.975 6.975 15 O -0.960 6.960 16 C -0.633 4.633 17 C -0.067 4.067 18 C 0.068 3.932 19 O -0.377 6.377 20 C 0.031 3.969 21 C -0.117 4.117 22 C -0.144 4.144 23 C -0.134 4.134 24 H 0.197 0.803 25 H 0.106 0.894 26 H 0.058 0.942 27 H 0.267 0.733 28 H 0.131 0.869 29 H 0.118 0.882 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.467 7.222 7.333 13.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.095 4.095 3 C 0.125 3.875 4 N -0.673 5.673 5 C -0.450 4.450 6 H 0.129 0.871 7 C -0.164 4.164 8 N -0.489 5.489 9 Si 0.727 3.273 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.194 1.194 13 S 2.669 3.331 14 O -0.965 6.965 15 O -0.950 6.950 16 C -0.757 4.757 17 C -0.069 4.069 18 C -0.009 4.009 19 O -0.295 6.295 20 C -0.066 4.066 21 C -0.155 4.155 22 C -0.182 4.182 23 C -0.171 4.171 24 H 0.214 0.786 25 H 0.124 0.876 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.149 0.851 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.962 7.669 7.371 13.287 hybrid contribution 0.559 -0.667 -0.977 1.308 sum 8.521 7.002 6.395 12.749 Atomic orbital electron populations 1.24157 0.95305 1.03625 1.06098 1.22981 0.94212 0.97230 0.95126 1.17830 0.84865 0.93797 0.90959 1.53244 1.71719 1.28190 1.14144 1.19296 1.40657 1.02963 0.82069 0.87072 1.25042 0.95404 0.96966 0.98967 1.70222 1.21676 1.15634 1.41331 0.86342 0.79583 0.79247 0.82093 1.20436 1.21206 1.19438 1.06619 0.78386 0.74368 0.73719 1.93495 1.63934 1.86491 1.52596 1.93480 1.85713 1.62789 1.53068 1.30931 1.31810 1.03088 1.09833 1.21432 0.99613 0.92259 0.93576 1.22474 0.95673 0.96300 0.86496 1.87862 1.66713 1.40769 1.34158 1.22755 1.01898 0.87045 0.94892 1.22910 0.95461 1.01361 0.95761 1.22913 0.96834 1.00163 0.98262 1.23126 0.97346 1.03054 0.93589 0.78632 0.87590 0.92389 0.92254 0.85059 0.86373 0.92630 0.92302 0.94628 0.89618 0.93236 0.89693 0.90943 0.90303 0.91151 0.90504 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 69. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.37 19.25 29.55 0.57 -5.80 16 2 C -0.09 -2.32 11.23 -37.12 -0.42 -2.73 16 3 C 0.25 5.85 5.01 -6.83 -0.03 5.82 16 4 N -0.84 -20.61 2.81 -62.78 -0.18 -20.79 16 5 C -0.32 -8.34 9.30 -15.06 -0.14 -8.48 16 6 H 0.11 2.93 7.38 -52.49 -0.39 2.54 16 7 C 0.04 1.11 4.89 -17.43 -0.09 1.02 16 8 N -0.85 -22.52 9.10 55.49 0.50 -22.02 16 9 Si 0.90 19.97 29.63 -169.99 -5.04 14.93 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 S 2.58 57.05 4.54 -107.50 -0.49 56.56 16 14 O -0.98 -22.60 16.16 -57.54 -0.93 -23.53 16 15 O -0.96 -23.93 15.44 -57.54 -0.89 -24.82 16 16 C -0.63 -10.97 5.39 37.16 0.20 -10.77 16 17 C -0.07 -1.02 0.68 -153.69 -0.10 -1.13 16 18 C 0.07 1.05 4.69 37.15 0.17 1.23 16 19 O -0.38 -6.18 10.29 -35.23 -0.36 -6.54 16 20 C 0.03 0.40 11.01 101.05 1.11 1.52 16 21 C -0.12 -1.45 7.23 -25.82 -0.19 -1.63 16 22 C -0.14 -1.57 7.74 -25.83 -0.20 -1.77 16 23 C -0.13 -1.82 6.39 -25.92 -0.17 -1.98 16 24 H 0.20 3.77 7.80 -54.08 -0.42 3.35 16 25 H 0.11 2.50 6.37 -51.93 -0.33 2.17 16 26 H 0.06 1.15 7.71 -51.93 -0.40 0.75 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.13 2.31 7.95 -51.92 -0.41 1.90 16 29 H 0.12 1.79 8.14 -51.92 -0.42 1.36 16 30 H 0.06 0.96 6.28 -51.93 -0.33 0.63 16 31 H 0.06 0.74 7.30 -51.93 -0.38 0.36 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.08 0.77 7.60 -51.93 -0.39 0.37 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 40 H 0.10 1.28 8.09 -51.93 -0.42 0.86 16 LS Contribution 341.92 15.07 5.15 5.15 Total: -1.00 -32.10 341.92 -7.49 -39.58 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.98 Total: 6.19 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 0.72 Total: -24.72 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.33 Total: -42.81 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -2.18 Total: -54.89 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.04 Total: 14.93 kcal Atomic # 16 Polarization: 57.05 SS G_CDS: -0.49 Total: 56.56 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.10 -7.49 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845926123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.011 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds