Wall clock time and date at job start Fri Apr 10 2020 17:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47457 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47104 * 59.99987 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 O 1.45198 * 109.47036 * 179.97438 * 12 10 9 14 14 C 1.34231 * 116.99983 * 179.97438 * 13 12 10 15 15 O 1.20822 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00053 * 180.02562 * 14 13 12 17 17 H 1.09008 * 115.53732 * 325.58749 * 16 14 13 18 18 C 1.52957 * 117.48540 * 111.18166 * 16 14 13 19 19 H 1.08999 * 118.96620 * 356.70445 * 18 16 14 20 20 C 1.50937 * 118.99615 * 201.35467 * 18 16 14 21 21 C 1.38791 * 129.72846 * 115.01228 * 20 18 16 22 22 C 1.38018 * 120.31355 * 179.86655 * 21 20 18 23 23 C 1.38241 * 119.88898 * 0.10161 * 22 21 20 24 24 C 1.38022 * 119.87913 * 359.97311 * 23 22 21 25 25 C 1.37813 * 110.47624 * 295.01219 * 20 18 16 26 26 C 1.50960 * 110.46662 * 0.04950 * 25 20 18 27 27 C 1.53043 * 117.48206 * 180.02562 * 16 14 13 28 28 H 1.08998 * 119.41352 * 4.09050 * 27 16 14 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.07997 * 119.84193 * 359.95936 * 21 20 18 34 34 H 1.08003 * 120.05349 * 180.02562 * 22 21 20 35 35 H 1.08001 * 120.05847 * 179.97438 * 23 22 21 36 36 H 1.08000 * 119.84522 * 180.02562 * 24 23 22 37 37 H 1.08999 * 109.92660 * 240.96761 * 26 25 20 38 38 H 1.09007 * 109.92199 * 119.65690 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 8 2.1875 -5.9665 -0.0016 14 6 1.6745 -7.2069 -0.0016 15 8 0.4767 -7.3653 -0.0017 16 6 2.5926 -8.4020 -0.0016 17 1 3.5224 -8.2803 -0.5574 18 6 2.6337 -9.2604 1.2637 19 1 2.0480 -8.9525 2.1298 20 6 3.8360 -10.1381 1.5136 21 6 4.7864 -10.0743 2.5230 22 6 5.8178 -10.9904 2.5676 23 6 5.9067 -11.9752 1.6015 24 6 4.9634 -12.0392 0.5961 25 6 3.9251 -11.1195 0.5502 26 6 2.7915 -10.9929 -0.4387 27 6 1.9461 -9.7891 -0.0022 28 1 0.8616 -9.8743 -0.0704 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 4.7177 -9.3052 3.2780 34 1 6.5549 -10.9371 3.3552 35 1 6.7129 -12.6931 1.6336 36 1 5.0332 -12.8091 -0.1581 37 1 2.1840 -11.8978 -0.4253 38 1 3.1888 -10.8237 -1.4396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859853480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:18 Heat of formation + Delta-G solvation = -65.167059 kcal Electronic energy + Delta-G solvation = -22633.303318 eV Core-core repulsion = 19020.573745 eV Total energy + Delta-G solvation = -3612.729573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.115 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.34262 -40.01471 -38.21012 -37.29134 -35.98711 -34.00369 -32.12129 -31.38670 -30.90254 -28.66105 -27.98072 -25.36094 -24.30534 -22.63663 -21.46952 -20.73160 -20.02169 -19.57780 -18.07810 -17.89852 -16.75725 -16.46797 -16.18888 -15.73040 -15.44490 -15.23901 -14.64587 -14.27801 -14.06227 -13.87549 -13.76036 -13.43866 -13.08471 -12.81451 -12.73255 -12.33729 -12.09240 -11.97146 -11.62649 -11.59850 -11.15669 -11.13003 -10.93776 -10.48262 -10.43403 -10.39066 -10.37541 -10.29041 -9.61929 -9.03313 -8.78234 -8.52566 -8.08533 -6.50238 -3.92240 0.98709 1.10850 2.11221 2.52784 3.11678 3.23596 3.24791 3.31403 3.61346 3.73341 4.03577 4.13467 4.25273 4.44245 4.54285 4.70012 4.74790 4.80346 4.84471 5.05714 5.09045 5.14721 5.22642 5.29265 5.42719 5.45530 5.53897 5.62544 5.68324 5.72810 5.76351 5.92845 6.04971 6.16027 6.24870 6.36785 6.58802 6.70946 7.47925 7.82086 7.95889 8.48343 9.07057 9.39082 9.89017 10.67090 Molecular weight = 301.11amu Principal moments of inertia in cm(-1) A = 0.028167 B = 0.002489 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.823388 B =11248.814503 C =11938.788559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.575 6.575 12 C 0.060 3.940 13 O -0.319 6.319 14 C 0.493 3.507 15 O -0.511 6.511 16 C -0.123 4.123 17 H 0.137 0.863 18 C -0.095 4.095 19 H 0.126 0.874 20 C -0.067 4.067 21 C -0.094 4.094 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.109 4.109 25 C -0.092 4.092 26 C -0.055 4.055 27 C -0.122 4.122 28 H 0.138 0.862 29 H 0.273 0.727 30 H 0.395 0.605 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.040 -23.606 1.973 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.430 4.430 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.223 3.777 11 O -0.459 6.459 12 C -0.017 4.017 13 O -0.233 6.233 14 C 0.336 3.664 15 O -0.400 6.400 16 C -0.142 4.142 17 H 0.155 0.845 18 C -0.113 4.113 19 H 0.144 0.856 20 C -0.067 4.067 21 C -0.112 4.112 22 C -0.140 4.140 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.092 4.092 26 C -0.091 4.091 27 C -0.140 4.140 28 H 0.156 0.844 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.111 0.889 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.363 -23.452 1.976 24.138 hybrid contribution -0.395 1.032 0.064 1.107 sum 4.968 -22.419 2.041 23.054 Atomic orbital electron populations 1.69625 1.06001 1.28378 1.49792 1.25317 0.95697 0.99881 0.96922 0.85738 0.79719 0.80732 0.77804 1.19078 1.20610 1.20619 1.19777 0.93509 0.81729 1.48025 0.87557 1.41712 1.09373 1.04085 1.63886 1.19312 0.88339 0.84059 0.85971 1.90569 1.13400 1.86767 1.55134 1.22791 0.90833 0.84521 1.03579 1.86539 1.40220 1.13915 1.82578 1.22304 0.87373 0.84245 0.72519 1.90650 1.16528 1.86852 1.45951 1.21609 1.01236 0.87849 1.03523 0.84541 1.21450 0.97253 0.99998 0.92580 0.85604 1.19597 0.95188 0.95961 0.95995 1.20778 0.93596 0.98921 0.97948 1.21057 0.98280 0.95316 0.99300 1.21056 0.98762 0.98734 0.94842 1.20624 0.94153 0.98788 0.99134 1.20487 0.96642 0.95875 0.96159 1.20326 0.93615 0.96975 0.98199 1.23061 1.00450 0.90265 1.00231 0.84399 0.91679 0.77153 0.89468 0.89414 0.85763 0.85649 0.85753 0.86022 0.88940 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 8 H 0.11 3.09 7.16 -52.49 -0.38 2.71 16 9 N -0.55 -14.09 5.29 -10.96 -0.06 -14.14 16 10 C 0.44 10.70 7.86 -10.98 -0.09 10.61 16 11 O -0.57 -16.20 16.08 -14.12 -0.23 -16.43 16 12 C 0.06 1.17 5.94 36.01 0.21 1.38 16 13 O -0.32 -6.10 9.75 -45.91 -0.45 -6.55 16 14 C 0.49 7.94 7.74 36.00 0.28 8.22 16 15 O -0.51 -8.86 16.08 -18.75 -0.30 -9.17 16 16 C -0.12 -1.55 5.88 -91.77 -0.54 -2.09 16 17 H 0.14 1.64 8.14 -51.92 -0.42 1.22 16 18 C -0.09 -1.06 6.58 -91.44 -0.60 -1.66 16 19 H 0.13 1.39 8.14 -51.93 -0.42 0.96 16 20 C -0.07 -0.72 5.94 -104.46 -0.62 -1.34 16 21 C -0.09 -0.94 10.04 -39.46 -0.40 -1.34 16 22 C -0.12 -1.04 10.04 -39.66 -0.40 -1.44 16 23 C -0.12 -0.92 10.05 -39.66 -0.40 -1.32 16 24 C -0.11 -0.90 10.04 -39.46 -0.40 -1.30 16 25 C -0.09 -0.87 6.11 -104.45 -0.64 -1.51 16 26 C -0.05 -0.44 6.57 -27.53 -0.18 -0.62 16 27 C -0.12 -1.24 6.56 -90.14 -0.59 -1.83 16 28 H 0.14 1.38 7.79 -51.93 -0.40 0.98 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 31 H 0.09 1.53 8.13 -51.93 -0.42 1.10 16 32 H 0.09 1.54 8.13 -51.93 -0.42 1.11 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 35 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -32.84 337.89 -9.30 -42.14 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.46 Total: 8.92 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -4.60 Total: -2.18 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.67 Total: -37.57 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.98 Total: -32.15 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.84 -9.30 -42.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859853480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.029 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds