Wall clock time and date at job start Fri Apr 10 2020 17:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47272 * 298.33481 * 3 2 1 5 5 O 1.42897 * 109.45020 * 299.97065 * 4 3 2 6 6 C 1.53037 * 109.45877 * 180.02562 * 4 3 2 7 7 C 1.53196 * 109.31040 * 178.61574 * 6 4 3 8 8 N 1.46920 * 108.77435 * 54.63686 * 7 6 4 9 9 S 1.65606 * 120.63323 * 126.37256 * 8 7 6 10 10 O 1.42097 * 104.27954 * 206.06759 * 9 8 7 11 11 O 1.42101 * 104.27316 * 333.92429 * 9 8 7 12 12 C 1.81398 * 104.44914 * 89.99399 * 9 8 7 13 13 C 1.52998 * 109.46818 * 180.02562 * 12 9 8 14 14 C 1.50707 * 109.47076 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99628 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00013 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99909 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99921 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47114 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47258 * 119.99780 * 18 16 14 21 21 H 1.48509 * 109.47056 * 239.99753 * 18 16 14 22 22 C 1.46926 * 118.73951 * 306.38547 * 8 7 6 23 23 C 1.53040 * 109.45685 * 59.93037 * 4 3 2 24 24 H 4.44650 * 5.63365 * 179.97438 * 4 1 2 25 25 H 1.08997 * 109.46917 * 178.33661 * 3 2 1 26 26 H 1.09000 * 109.46902 * 58.33531 * 3 2 1 27 27 H 0.96701 * 114.00198 * 60.02512 * 5 4 3 28 28 H 1.08999 * 109.50017 * 58.65982 * 6 4 3 29 29 H 1.09004 * 109.49998 * 298.56579 * 6 4 3 30 30 H 1.08998 * 109.58545 * 174.42116 * 7 6 4 31 31 H 1.08999 * 109.58713 * 294.84595 * 7 6 4 32 32 H 1.08994 * 109.47207 * 300.00207 * 12 9 8 33 33 H 1.08997 * 109.47305 * 60.00555 * 12 9 8 34 34 H 1.09003 * 109.47317 * 300.00091 * 13 12 9 35 35 H 1.08997 * 109.47399 * 60.00387 * 13 12 9 36 36 H 0.97002 * 119.99688 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.58617 * 173.39731 * 22 8 7 38 38 H 1.08995 * 109.59240 * 293.82509 * 22 8 7 39 39 H 1.09003 * 109.49938 * 61.44039 * 23 4 3 40 40 H 1.08991 * 109.50504 * 301.33686 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.6838 1.2697 5 8 2.6800 0.0240 2.4160 6 6 4.6867 -0.6823 1.2697 7 6 5.1939 -1.3373 2.5583 8 7 4.5918 -2.6720 2.6791 9 16 5.5426 -4.0100 2.8988 10 8 4.7721 -5.0787 2.3666 11 8 6.7916 -3.6503 2.3244 12 6 5.6922 -4.1682 4.6997 13 6 6.5594 -5.3834 5.0345 14 6 6.6832 -5.5153 6.5307 15 1 6.1927 -4.8032 7.1779 16 6 7.4234 -6.5442 7.0731 17 7 8.0210 -7.4110 6.2849 18 14 7.5774 -6.7073 8.9276 19 1 6.8175 -5.6141 9.5854 20 1 7.0296 -8.0192 9.3564 21 1 9.0082 -6.6177 9.3152 22 6 3.1299 -2.7972 2.6010 23 6 2.6453 -2.1257 1.3121 24 1 -1.0499 0.0001 0.0003 25 1 3.0088 1.0280 -0.0298 26 1 3.0095 -0.5387 -0.8747 27 1 1.7161 0.0638 2.4813 28 1 5.0496 0.3441 1.2159 29 1 5.0511 -1.2430 0.4088 30 1 6.2794 -1.4284 2.5191 31 1 4.9070 -0.7280 3.4153 32 1 6.1549 -3.2690 5.1062 33 1 4.7019 -4.2966 5.1366 34 1 6.0971 -6.2829 4.6278 35 1 7.5496 -5.2546 4.5976 36 1 8.5415 -8.1351 6.6666 37 1 2.8536 -3.8515 2.5899 38 1 2.6746 -2.3070 3.4614 39 1 3.0285 -2.6731 0.4509 40 1 1.5556 -2.1264 1.2887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882774104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:43 Heat of formation + Delta-G solvation = -79.876881 kcal Electronic energy + Delta-G solvation = -22982.424603 eV Core-core repulsion = 19504.501116 eV Total energy + Delta-G solvation = -3477.923487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.84721 -36.64776 -36.05510 -35.37660 -33.99056 -33.86930 -31.76928 -31.15288 -31.11692 -28.17740 -25.56342 -23.67111 -23.25022 -21.54859 -20.46093 -18.55742 -18.39982 -17.62316 -16.69519 -16.50676 -15.86902 -15.47427 -15.17347 -15.05240 -14.56693 -14.54316 -14.32537 -14.06866 -13.50970 -13.34112 -12.83682 -12.52207 -12.36677 -12.24605 -11.91864 -11.73167 -11.60914 -11.54642 -11.27247 -11.25129 -11.08269 -10.94780 -10.85803 -10.61044 -10.38967 -10.37264 -10.36661 -9.95850 -9.73569 -9.28318 -8.71928 -8.49798 -6.11678 -4.17026 0.78288 2.42245 2.49672 3.05201 3.26006 3.33233 3.36985 3.93013 3.97997 4.31064 4.40141 4.45187 4.52315 4.60018 4.71834 4.96452 5.04314 5.23573 5.25659 5.28256 5.36071 5.46090 5.51935 5.61303 5.63387 5.71043 5.73853 5.78411 5.82081 5.93371 6.13456 6.23295 6.51839 6.72470 7.24411 7.31431 7.37372 7.40817 7.81872 8.18915 8.86758 9.47755 10.99422 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.031825 B = 0.003295 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.596954 B = 8494.761104 C = 8688.671383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C -0.042 4.042 4 C 0.143 3.857 5 O -0.550 6.550 6 C -0.116 4.116 7 C 0.123 3.877 8 N -1.006 6.006 9 S 2.590 3.410 10 O -0.966 6.966 11 O -0.965 6.965 12 C -0.589 4.589 13 C 0.027 3.973 14 C -0.519 4.519 15 H 0.062 0.938 16 C 0.057 3.943 17 N -0.891 5.891 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.124 3.876 23 C -0.157 4.157 24 H 0.217 0.783 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.373 0.627 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.264 0.736 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.098 16.110 -11.191 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.186 4.186 3 C -0.079 4.079 4 C 0.102 3.898 5 O -0.355 6.355 6 C -0.155 4.155 7 C -0.002 4.002 8 N -0.842 5.842 9 S 2.690 3.310 10 O -0.956 6.956 11 O -0.955 6.955 12 C -0.722 4.722 13 C -0.012 4.012 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.001 4.001 23 C -0.196 4.196 24 H 0.234 0.766 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.221 0.779 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.978 15.500 -11.815 22.876 hybrid contribution -0.944 0.033 1.391 1.682 sum -12.922 15.534 -10.423 22.736 Atomic orbital electron populations 1.24934 0.95946 1.01278 1.00253 1.22983 0.94382 1.00279 1.00953 1.19569 0.85288 1.03057 0.99975 1.21088 0.94629 0.90087 0.84012 1.86546 1.26483 1.77192 1.45312 1.21865 0.91966 1.02062 0.99643 1.21305 0.98406 0.82837 0.97681 1.57922 1.16021 1.21576 1.88690 1.05667 0.73376 0.72692 0.79314 1.93521 1.70569 1.53637 1.77880 1.93522 1.43201 1.82415 1.76385 1.30489 1.10139 1.10253 1.21350 1.18971 0.93820 0.88987 0.99392 1.21056 1.32013 1.12321 0.90461 0.91985 1.25076 0.95290 0.95570 0.98611 1.69970 1.32632 1.15345 1.34959 0.86411 0.77948 0.78083 0.84833 1.19629 1.20802 1.20793 1.21277 0.79602 1.01869 0.97374 1.22562 1.01155 0.96101 0.99804 0.76609 0.88659 0.88569 0.77946 0.89929 0.89854 0.88679 0.90667 0.86252 0.86316 0.94907 0.94873 0.92598 0.88789 0.91133 0.90322 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.48 19.25 29.55 0.57 -0.91 16 2 C -0.19 -1.52 11.03 -37.12 -0.41 -1.93 16 3 C -0.04 -0.32 5.00 -29.52 -0.15 -0.46 16 4 C 0.14 1.28 0.73 -90.58 -0.07 1.22 16 5 O -0.55 -5.14 11.67 -35.23 -0.41 -5.55 16 6 C -0.12 -1.13 5.11 -26.61 -0.14 -1.27 16 7 C 0.12 1.47 6.19 -3.71 -0.02 1.45 16 8 N -1.01 -13.86 3.22 -113.52 -0.37 -14.22 16 9 S 2.59 47.04 5.45 -107.50 -0.59 46.45 16 10 O -0.97 -19.96 16.59 -57.54 -0.95 -20.91 16 11 O -0.96 -19.84 16.59 -57.54 -0.95 -20.80 16 12 C -0.59 -11.49 6.12 37.16 0.23 -11.27 16 13 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 14 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 15 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 18 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 C 0.12 1.48 6.19 -3.71 -0.02 1.45 16 23 C -0.16 -1.56 4.85 -26.61 -0.13 -1.69 16 24 H 0.22 0.88 7.80 -54.10 -0.42 0.46 16 25 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.37 2.68 8.09 45.56 0.37 3.05 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.18 6.86 -51.93 -0.36 0.83 16 31 H 0.08 0.84 7.81 -51.93 -0.41 0.44 16 32 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 33 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.09 1.19 6.86 -51.93 -0.36 0.83 16 38 H 0.07 0.74 7.81 -51.93 -0.41 0.34 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.66 7.18 -51.93 -0.37 0.29 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -35.18 343.42 -8.36 -43.54 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.30 Total: 2.05 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: -0.69 Total: -26.12 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.37 Total: -40.14 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -2.32 Total: -47.26 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 47.04 SS G_CDS: -0.59 Total: 46.45 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.18 -8.36 -43.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882774104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.336 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds