Wall clock time and date at job start Fri Apr 10 2020 17:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47272 * 298.33481 * 3 2 1 5 5 O 1.42897 * 109.45020 * 299.97065 * 4 3 2 6 6 C 1.53037 * 109.45877 * 180.02562 * 4 3 2 7 7 C 1.53196 * 109.31040 * 178.61574 * 6 4 3 8 8 N 1.46920 * 108.77435 * 54.63686 * 7 6 4 9 9 S 1.65606 * 120.63323 * 126.37256 * 8 7 6 10 10 O 1.42097 * 104.27954 * 206.06759 * 9 8 7 11 11 O 1.42101 * 104.27316 * 333.92429 * 9 8 7 12 12 C 1.81398 * 104.44914 * 89.99399 * 9 8 7 13 13 C 1.52998 * 109.46818 * 180.02562 * 12 9 8 14 14 C 1.50707 * 109.47076 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99628 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00013 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99909 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99921 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47114 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47258 * 119.99780 * 18 16 14 21 21 H 1.48509 * 109.47056 * 239.99753 * 18 16 14 22 22 C 1.46926 * 118.73951 * 306.38547 * 8 7 6 23 23 C 1.53040 * 109.45685 * 59.93037 * 4 3 2 24 24 H 4.44650 * 5.63365 * 179.97438 * 4 1 2 25 25 H 1.08997 * 109.46917 * 178.33661 * 3 2 1 26 26 H 1.09000 * 109.46902 * 58.33531 * 3 2 1 27 27 H 0.96701 * 114.00198 * 60.02512 * 5 4 3 28 28 H 1.08999 * 109.50017 * 58.65982 * 6 4 3 29 29 H 1.09004 * 109.49998 * 298.56579 * 6 4 3 30 30 H 1.08998 * 109.58545 * 174.42116 * 7 6 4 31 31 H 1.08999 * 109.58713 * 294.84595 * 7 6 4 32 32 H 1.08994 * 109.47207 * 300.00207 * 12 9 8 33 33 H 1.08997 * 109.47305 * 60.00555 * 12 9 8 34 34 H 1.09003 * 109.47317 * 300.00091 * 13 12 9 35 35 H 1.08997 * 109.47399 * 60.00387 * 13 12 9 36 36 H 0.97002 * 119.99688 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.58617 * 173.39731 * 22 8 7 38 38 H 1.08995 * 109.59240 * 293.82509 * 22 8 7 39 39 H 1.09003 * 109.49938 * 61.44039 * 23 4 3 40 40 H 1.08991 * 109.50504 * 301.33686 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.6838 1.2697 5 8 2.6800 0.0240 2.4160 6 6 4.6867 -0.6823 1.2697 7 6 5.1939 -1.3373 2.5583 8 7 4.5918 -2.6720 2.6791 9 16 5.5426 -4.0100 2.8988 10 8 4.7721 -5.0787 2.3666 11 8 6.7916 -3.6503 2.3244 12 6 5.6922 -4.1682 4.6997 13 6 6.5594 -5.3834 5.0345 14 6 6.6832 -5.5153 6.5307 15 1 6.1927 -4.8032 7.1779 16 6 7.4234 -6.5442 7.0731 17 7 8.0210 -7.4110 6.2849 18 14 7.5774 -6.7073 8.9276 19 1 6.8175 -5.6141 9.5854 20 1 7.0296 -8.0192 9.3564 21 1 9.0082 -6.6177 9.3152 22 6 3.1299 -2.7972 2.6010 23 6 2.6453 -2.1257 1.3121 24 1 -1.0499 0.0001 0.0003 25 1 3.0088 1.0280 -0.0298 26 1 3.0095 -0.5387 -0.8747 27 1 1.7161 0.0638 2.4813 28 1 5.0496 0.3441 1.2159 29 1 5.0511 -1.2430 0.4088 30 1 6.2794 -1.4284 2.5191 31 1 4.9070 -0.7280 3.4153 32 1 6.1549 -3.2690 5.1062 33 1 4.7019 -4.2966 5.1366 34 1 6.0971 -6.2829 4.6278 35 1 7.5496 -5.2546 4.5976 36 1 8.5415 -8.1351 6.6666 37 1 2.8536 -3.8515 2.5899 38 1 2.6746 -2.3070 3.4614 39 1 3.0285 -2.6731 0.4509 40 1 1.5556 -2.1264 1.2887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882774104.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:41 Heat of formation + Delta-G solvation = -106.384026 kcal Electronic energy + Delta-G solvation = -22983.574039 eV Core-core repulsion = 19504.501116 eV Total energy + Delta-G solvation = -3479.072923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.61855 -38.22964 -37.12010 -36.80398 -35.89990 -34.56977 -33.13158 -32.53553 -31.99176 -28.91101 -27.57465 -24.54469 -24.21052 -23.42162 -21.33907 -19.80308 -19.12819 -18.95753 -18.38504 -17.43326 -17.22011 -16.98810 -16.54882 -15.92182 -15.84743 -15.70729 -15.30798 -15.07061 -14.78894 -14.47733 -14.21127 -13.74350 -13.68631 -13.36216 -13.24043 -13.18874 -12.96266 -12.94105 -12.79436 -12.75806 -12.27443 -12.19404 -12.12934 -12.03822 -11.81107 -11.65488 -11.30675 -11.11740 -10.98340 -10.66637 -10.64271 -9.86880 -8.27224 -6.41481 -0.70779 1.40266 1.41008 1.54545 1.74096 1.88125 1.96516 2.37389 2.84837 3.05968 3.16969 3.30379 3.43565 3.59805 3.84320 3.94464 3.98984 4.08566 4.18335 4.21930 4.43621 4.58827 4.72284 4.73009 4.74061 4.77844 4.81026 4.89658 5.02514 5.09923 5.19989 5.25256 5.25990 5.27144 5.36171 5.67346 5.69075 6.05327 6.72082 6.72250 6.83338 7.28820 8.85294 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.031825 B = 0.003295 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.596954 B = 8494.761104 C = 8688.671383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.216 4.216 3 C -0.037 4.037 4 C 0.148 3.852 5 O -0.558 6.558 6 C -0.119 4.119 7 C 0.114 3.886 8 N -0.994 5.994 9 S 2.614 3.386 10 O -0.993 6.993 11 O -0.991 6.991 12 C -0.590 4.590 13 C 0.021 3.979 14 C -0.540 4.540 15 H 0.074 0.926 16 C -0.005 4.005 17 N -0.934 5.934 18 Si 0.975 3.025 19 H -0.256 1.256 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.115 3.885 23 C -0.154 4.154 24 H 0.241 0.759 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.383 0.617 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.268 0.732 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.755 18.162 -10.536 25.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.216 4.216 3 C -0.074 4.074 4 C 0.107 3.893 5 O -0.365 6.365 6 C -0.157 4.157 7 C -0.010 4.010 8 N -0.833 5.833 9 S 2.713 3.287 10 O -0.984 6.984 11 O -0.982 6.982 12 C -0.721 4.721 13 C -0.018 4.018 14 C -0.578 4.578 15 H 0.093 0.907 16 C -0.203 4.203 17 N -0.574 5.574 18 Si 0.799 3.201 19 H -0.180 1.180 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.009 4.009 23 C -0.194 4.194 24 H 0.257 0.743 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.232 0.768 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.644 17.558 -11.149 24.875 hybrid contribution -0.506 -0.543 1.123 1.346 sum -14.150 17.015 -10.025 24.295 Atomic orbital electron populations 1.25638 0.96760 1.00203 0.99072 1.23252 0.94927 1.01325 1.02052 1.19493 0.85284 1.03410 0.99216 1.20979 0.93988 0.89495 0.84797 1.86515 1.27510 1.77080 1.45416 1.21915 0.92711 1.02934 0.98189 1.21558 0.98091 0.81731 0.99632 1.57561 1.16624 1.21043 1.88111 1.04647 0.72897 0.72988 0.78191 1.93478 1.71106 1.55738 1.78045 1.93480 1.45110 1.83028 1.76549 1.30413 1.10004 1.08098 1.23624 1.18823 0.93515 0.90811 0.98675 1.21551 1.31967 1.12633 0.91691 0.90749 1.26136 0.94800 0.95145 1.04206 1.70112 1.33610 1.16181 1.37489 0.85243 0.78193 0.78525 0.78157 1.17982 1.20260 1.20262 1.21536 0.78081 1.01885 0.99422 1.22561 1.02050 0.96577 0.98186 0.74280 0.87810 0.88059 0.76829 0.87872 0.89922 0.89467 0.89406 0.84319 0.84385 0.97596 0.97535 0.92344 0.89843 0.89272 0.91110 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.33 19.25 74.32 1.43 -0.89 16 2 C -0.22 -3.01 11.03 31.13 0.34 -2.66 16 3 C -0.04 -0.48 5.00 28.79 0.14 -0.33 16 4 C 0.15 2.33 0.73 -10.77 -0.01 2.32 16 5 O -0.56 -8.88 11.67 -148.98 -1.74 -10.62 16 6 C -0.12 -2.07 5.11 30.67 0.16 -1.91 16 7 C 0.11 2.56 6.19 86.37 0.53 3.09 16 8 N -0.99 -26.39 3.22 -513.08 -1.65 -28.04 16 9 S 2.61 96.03 5.45 -56.49 -0.31 95.72 16 10 O -0.99 -41.94 16.59 -127.65 -2.12 -44.06 16 11 O -0.99 -41.59 16.59 -127.65 -2.12 -43.71 16 12 C -0.59 -23.07 6.12 71.98 0.44 -22.63 16 13 C 0.02 1.10 4.98 29.85 0.15 1.25 16 14 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 15 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 16 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 17 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 18 Si 0.98 43.70 29.54 68.60 2.03 45.72 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 C 0.12 2.57 6.19 86.36 0.53 3.11 16 23 C -0.15 -2.79 4.85 30.67 0.15 -2.64 16 24 H 0.24 1.22 7.80 -4.42 -0.03 1.18 16 25 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.38 4.43 8.09 -74.06 -0.60 3.83 16 28 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 2.10 6.86 -2.39 -0.02 2.08 16 31 H 0.09 1.76 7.81 -2.39 -0.02 1.74 16 32 H 0.14 4.81 8.14 -2.39 -0.02 4.79 16 33 H 0.14 4.79 8.14 -2.39 -0.02 4.77 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.08 2.05 6.86 -2.39 -0.02 2.03 16 38 H 0.09 1.67 7.81 -2.39 -0.02 1.65 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.38 7.18 -2.39 -0.02 1.36 16 Total: -1.00 -76.63 343.42 -0.62 -77.25 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.43 Total: 16.14 kcal Atomic # 6 Polarization: -55.87 SS G_CDS: 4.57 Total: -51.30 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -1.37 Total: -85.15 kcal Atomic # 8 Polarization: -92.42 SS G_CDS: -5.97 Total: -98.39 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 96.03 SS G_CDS: -0.31 Total: 95.72 kcal Total: -76.63 -0.62 -77.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882774104.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.135 kcal (2) G-P(sol) polarization free energy of solvation -76.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds