Wall clock time and date at job start Fri Apr 10 2020 17:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48505 * 109.46912 * 240.00012 * 3 2 1 5 5 H 1.48506 * 109.47354 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47279 * 120.00346 * 3 2 1 7 7 C 1.37875 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99733 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99972 * 359.97438 * 7 2 1 10 10 S 1.81405 * 109.47179 * 180.02562 * 9 7 2 11 11 O 1.42105 * 108.57448 * 65.51133 * 10 9 7 12 12 O 1.42099 * 108.57701 * 294.49248 * 10 9 7 13 13 C 1.81390 * 101.92218 * 180.02562 * 10 9 7 14 14 C 1.50710 * 109.46970 * 180.02562 * 13 10 9 15 15 O 1.21278 * 119.99788 * 359.97438 * 14 13 10 16 16 N 1.34776 * 119.99909 * 180.02562 * 14 13 10 17 17 C 1.46496 * 119.99969 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46864 * 255.49826 * 17 16 14 19 19 C 1.52997 * 117.49841 * 128.74993 * 18 17 16 20 20 C 1.52998 * 117.50035 * 60.08853 * 18 17 16 21 21 C 1.53001 * 109.47039 * 135.50026 * 17 16 14 22 22 C 1.53000 * 117.49598 * 252.84804 * 21 17 16 23 23 C 1.53006 * 117.49607 * 184.19274 * 21 17 16 24 24 H 0.96990 * 119.99945 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46662 * 60.00673 * 9 7 2 26 26 H 1.08993 * 109.47338 * 300.00162 * 9 7 2 27 27 H 1.09001 * 109.47493 * 60.00578 * 13 10 9 28 28 H 1.09000 * 109.47392 * 300.00026 * 13 10 9 29 29 H 0.97002 * 120.00028 * 359.97438 * 16 14 13 30 30 H 1.08994 * 109.47362 * 15.49771 * 17 16 14 31 31 H 1.09006 * 115.54932 * 274.41399 * 18 17 16 32 32 H 1.09000 * 117.49849 * 359.97438 * 19 18 17 33 33 H 1.08997 * 117.50369 * 145.01909 * 19 18 17 34 34 H 1.08995 * 117.50001 * 214.98141 * 20 18 17 35 35 H 1.09000 * 117.49792 * 359.97438 * 20 18 17 36 36 H 1.08992 * 115.55394 * 38.52077 * 21 17 16 37 37 H 1.09006 * 117.50121 * 359.97438 * 22 21 17 38 38 H 1.08996 * 117.50104 * 145.02449 * 22 21 17 39 39 H 1.08998 * 117.49625 * 214.97978 * 23 21 17 40 40 H 1.09003 * 117.49754 * 359.96772 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 16 2.4300 -3.8779 -0.0005 11 8 3.1485 -3.8591 1.2253 12 8 3.1486 -3.8591 -1.2263 13 6 1.3245 -5.3160 -0.0013 14 6 2.1450 -6.5803 -0.0008 15 8 3.3561 -6.5171 -0.0004 16 7 1.5327 -7.7809 -0.0017 17 6 2.3301 -9.0098 -0.0007 18 6 2.3068 -9.6341 -1.3973 19 6 3.6510 -9.9978 -2.0311 20 6 2.8574 -8.7979 -2.5542 21 6 1.7432 -9.9977 1.0095 22 6 2.5187 -10.2239 2.3089 23 6 2.4956 -11.3114 1.2319 24 1 -0.4849 0.8400 0.0004 25 1 0.6243 -2.5566 -0.8904 26 1 0.6249 -2.5571 0.8896 27 1 0.6961 -5.2908 -0.8916 28 1 0.6954 -5.2913 0.8884 29 1 0.5640 -7.8314 -0.0024 30 1 3.3582 -8.7756 0.2754 31 1 1.4588 -10.2863 -1.6066 32 1 4.5520 -9.7919 -1.4533 33 1 3.6873 -10.8889 -2.6577 34 1 2.3719 -8.9002 -3.5247 35 1 3.2359 -7.8029 -2.3204 36 1 0.6549 -10.0261 1.0615 37 1 3.4473 -9.6691 2.4439 38 1 1.9406 -10.4013 3.2157 39 1 1.9021 -12.2038 1.4305 40 1 3.4084 -11.4719 0.6581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905267273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:29 Heat of formation + Delta-G solvation = -64.593053 kcal Electronic energy + Delta-G solvation = -22558.964436 eV Core-core repulsion = 19081.703705 eV Total energy + Delta-G solvation = -3477.260731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21910 -38.22575 -36.39356 -35.93434 -34.96441 -34.07138 -33.34054 -30.52884 -29.02898 -27.15749 -23.54915 -22.77353 -22.45193 -21.72298 -20.80452 -20.56359 -17.97549 -17.35709 -16.99189 -16.59611 -16.26818 -15.66445 -15.48653 -15.14730 -14.77074 -14.56817 -14.31350 -14.03928 -13.83729 -13.34552 -12.52126 -12.48577 -12.13843 -12.06897 -11.85192 -11.78232 -11.58161 -11.39255 -11.04216 -10.99014 -10.85847 -10.83821 -10.70132 -10.60815 -10.55769 -10.35524 -10.16602 -10.00574 -9.78882 -9.21056 -9.08990 -8.69915 -6.33356 -4.42499 0.87361 2.51565 2.85610 3.26559 3.27854 3.33955 3.51137 3.71877 3.83304 4.22980 4.25939 4.43980 4.55248 4.68522 4.72883 4.79148 4.82478 4.87012 4.93592 5.03720 5.11394 5.15945 5.38512 5.38938 5.45903 5.50500 5.53154 5.64974 5.77180 5.86496 5.86760 6.00369 6.11785 6.32125 6.62062 6.66134 7.27890 7.48973 7.74648 8.05932 8.59509 9.24652 10.78638 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.030656 B = 0.003287 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.141580 B = 8516.252527 C = 8822.313657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.073 0.927 9 C -0.407 4.407 10 S 2.423 3.577 11 O -0.942 6.942 12 O -0.942 6.942 13 C -0.677 4.677 14 C 0.547 3.453 15 O -0.528 6.528 16 N -0.714 5.714 17 C 0.196 3.804 18 C -0.166 4.166 19 C -0.170 4.170 20 C -0.174 4.174 21 C -0.163 4.163 22 C -0.177 4.177 23 C -0.166 4.166 24 H 0.269 0.731 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.403 0.597 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 -21.393 -0.277 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.091 0.909 9 C -0.541 4.541 10 S 2.603 3.397 11 O -0.939 6.939 12 O -0.939 6.939 13 C -0.800 4.800 14 C 0.333 3.667 15 O -0.404 6.404 16 N -0.365 5.365 17 C 0.092 3.908 18 C -0.185 4.185 19 C -0.208 4.208 20 C -0.211 4.211 21 C -0.182 4.182 22 C -0.214 4.214 23 C -0.204 4.204 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.172 0.828 28 H 0.172 0.828 29 H 0.237 0.763 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.664 -21.328 -0.269 21.340 hybrid contribution -1.386 0.624 -0.023 1.520 sum -2.049 -20.704 -0.292 20.807 Atomic orbital electron populations 1.69934 1.06247 1.27844 1.47950 1.24929 0.95046 0.99590 0.93507 0.86399 0.79609 0.81212 0.79584 1.19356 1.20758 1.19351 1.20332 0.93055 0.88338 1.55083 0.90894 1.27610 1.09975 1.09876 1.06675 1.08502 0.78828 0.77034 0.75331 1.93468 1.69063 1.85440 1.45977 1.93465 1.69062 1.85441 1.45962 1.31171 1.19357 1.16795 1.12631 1.19431 0.87805 0.84226 0.75246 1.90835 1.13586 1.86866 1.49128 1.45801 1.10317 1.04806 1.75571 1.20154 0.96782 0.82209 0.91669 1.22603 0.98389 1.03880 0.93669 1.22969 0.94638 0.99477 1.03691 1.22985 1.03703 0.96943 0.97495 1.22446 0.98796 0.98512 0.98413 1.23077 1.02592 1.02809 0.92873 1.22905 1.02607 0.92184 1.02682 0.92158 0.89642 0.89659 0.82780 0.82803 0.76287 0.87992 0.87556 0.88634 0.88728 0.88769 0.88046 0.87434 0.88423 0.88612 0.88645 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.66 13.29 55.43 0.74 -23.92 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -14.69 9.13 -34.44 -0.31 -15.01 16 8 H 0.07 2.03 7.71 -52.48 -0.40 1.62 16 9 C -0.41 -9.53 5.56 36.00 0.20 -9.33 16 10 S 2.42 52.21 3.88 -107.50 -0.42 51.79 16 11 O -0.94 -23.39 17.95 -59.53 -1.07 -24.46 16 12 O -0.94 -23.27 17.95 -59.53 -1.07 -24.34 16 13 C -0.68 -9.95 6.29 36.01 0.23 -9.73 16 14 C 0.55 8.74 7.59 -10.98 -0.08 8.65 16 15 O -0.53 -10.70 14.75 2.56 0.04 -10.67 16 16 N -0.71 -8.17 4.81 -53.81 -0.26 -8.43 16 17 C 0.20 2.10 2.64 -67.93 -0.18 1.92 16 18 C -0.17 -1.58 5.12 -90.62 -0.46 -2.05 16 19 C -0.17 -1.62 10.18 -26.69 -0.27 -1.89 16 20 C -0.17 -1.96 10.13 -26.69 -0.27 -2.23 16 21 C -0.16 -1.36 5.37 -90.62 -0.49 -1.84 16 22 C -0.18 -1.50 10.18 -26.69 -0.27 -1.78 16 23 C -0.17 -1.21 9.99 -26.69 -0.27 -1.47 16 24 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.09 1.91 8.14 -51.92 -0.42 1.49 16 26 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 27 H 0.15 1.73 8.14 -51.92 -0.42 1.31 16 28 H 0.15 1.73 8.14 -51.92 -0.42 1.31 16 29 H 0.40 3.29 8.80 -40.82 -0.36 2.93 16 30 H 0.10 1.35 6.60 -51.93 -0.34 1.01 16 31 H 0.11 0.86 8.11 -51.93 -0.42 0.43 16 32 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 1.47 7.61 -51.93 -0.40 1.07 16 36 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 355.81 15.07 5.36 5.36 Total: -1.00 -36.42 355.81 -10.10 -46.52 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.12 Total: 4.86 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: -2.28 Total: -32.79 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.48 Total: -32.35 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -2.10 Total: -59.47 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 52.21 SS G_CDS: -0.42 Total: 51.79 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.42 -10.10 -46.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905267273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.074 kcal (2) G-P(sol) polarization free energy of solvation -36.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds