Wall clock time and date at job start Fri Apr 10 2020 17:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00190 * 2 1 4 4 H 1.48498 * 109.46856 * 269.99800 * 3 2 1 5 5 H 1.48503 * 109.46872 * 29.99410 * 3 2 1 6 6 H 1.48501 * 109.47227 * 149.99820 * 3 2 1 7 7 C 1.37885 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 180.02562 * 7 2 1 10 10 S 1.81399 * 109.47147 * 180.02562 * 9 7 2 11 11 O 1.42096 * 108.57743 * 294.48670 * 10 9 7 12 12 O 1.42105 * 108.57596 * 65.51252 * 10 9 7 13 13 C 1.81393 * 101.92117 * 179.97438 * 10 9 7 14 14 H 1.09001 * 109.36828 * 300.24656 * 13 10 9 15 15 C 1.53191 * 109.36937 * 180.62124 * 13 10 9 16 16 C 1.53008 * 108.18880 * 192.72036 * 15 13 10 17 17 H 1.09002 * 108.22720 * 309.81015 * 16 15 13 18 18 C 1.52292 * 110.72041 * 190.57521 * 16 15 13 19 19 C 1.52959 * 110.16336 * 296.17046 * 18 16 15 20 20 C 1.53104 * 109.02441 * 300.51869 * 19 18 16 21 21 C 1.52867 * 109.14443 * 61.26736 * 20 19 18 22 22 C 1.52675 * 108.98471 * 68.03494 * 16 15 13 23 23 H 1.09001 * 109.70383 * 186.36685 * 22 16 15 24 24 N 1.46280 * 109.52617 * 306.61778 * 22 16 15 25 25 C 1.33318 * 123.59979 * 21.78822 * 24 22 16 26 26 O 1.21284 * 117.97694 * 176.70840 * 25 24 22 27 27 H 0.96997 * 120.00191 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 29 29 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 30 30 H 1.08993 * 109.71822 * 312.41132 * 15 13 10 31 31 H 1.09005 * 109.71403 * 73.05179 * 15 13 10 32 32 H 1.09010 * 109.35365 * 175.96182 * 18 16 15 33 33 H 1.08995 * 109.35984 * 56.38834 * 18 16 15 34 34 H 1.08994 * 109.54465 * 180.65072 * 19 18 16 35 35 H 1.08996 * 109.61645 * 60.42562 * 19 18 16 36 36 H 1.09002 * 109.52680 * 301.36388 * 20 19 18 37 37 H 1.09004 * 109.57876 * 181.19766 * 20 19 18 38 38 H 1.08998 * 109.39876 * 178.97322 * 21 20 19 39 39 H 1.08997 * 109.39794 * 59.23095 * 21 20 19 40 40 H 0.97001 * 118.20116 * 201.81301 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 16 4.1162 -2.9044 0.0010 11 8 3.7403 -3.5175 1.2265 12 8 3.7412 -3.5170 -1.2252 13 6 5.9144 -2.6660 0.0009 14 1 6.2046 -2.1050 -0.8874 15 6 6.6079 -4.0318 -0.0149 16 6 8.0889 -3.8192 0.3054 17 1 8.4689 -3.0318 -0.3456 18 6 8.8834 -5.0935 0.0519 19 6 8.4186 -6.2016 0.9983 20 6 8.6244 -5.7420 2.4441 21 6 7.7819 -4.4919 2.6975 22 6 8.2231 -3.3663 1.7572 23 1 9.2601 -3.1030 1.9657 24 7 7.3672 -2.2027 1.9875 25 6 6.3150 -1.8988 1.2273 26 8 5.6393 -0.9435 1.5466 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6801 0.8912 29 1 3.8752 -0.6804 -0.8889 30 1 6.1585 -4.6812 0.7363 31 1 6.5063 -4.4845 -1.0013 32 1 9.9429 -4.8977 0.2176 33 1 8.7343 -5.4131 -0.9794 34 1 9.0011 -7.1047 0.8163 35 1 7.3621 -6.4088 0.8284 36 1 9.6772 -5.5109 2.6067 37 1 8.3157 -6.5338 3.1266 38 1 7.9112 -4.1715 3.7313 39 1 6.7313 -4.7212 2.5195 40 1 7.5769 -1.6199 2.7341 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905268268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:34 Heat of formation + Delta-G solvation = -118.446846 kcal Electronic energy + Delta-G solvation = -24085.120273 eV Core-core repulsion = 20605.524267 eV Total energy + Delta-G solvation = -3479.596006 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.05929 -38.56207 -36.15315 -35.25109 -34.65428 -33.72912 -33.06100 -30.51476 -29.61906 -29.36568 -24.86755 -23.17488 -22.84685 -22.67549 -21.10044 -18.32726 -18.17499 -17.34713 -17.31976 -16.77394 -16.29098 -15.60004 -15.29647 -15.15068 -14.75459 -14.43932 -14.11753 -14.01449 -13.82694 -13.44175 -13.09505 -12.65912 -12.57550 -12.50875 -12.02624 -11.95079 -11.65671 -11.46506 -11.43504 -11.28837 -11.23085 -10.95857 -10.71877 -10.61717 -10.52051 -10.27827 -10.21549 -9.79300 -9.50803 -9.20669 -9.17056 -8.65787 -6.16226 -4.22597 0.70317 2.57878 3.00317 3.28540 3.36480 3.46961 3.64379 3.97346 4.14980 4.20708 4.33762 4.39585 4.53354 4.70230 4.81297 4.83274 4.89648 4.98926 5.03437 5.05601 5.17515 5.23452 5.27234 5.44502 5.46034 5.55767 5.61911 5.73103 5.77875 5.83910 5.92020 5.98258 6.16196 6.42493 6.54761 6.78554 7.12989 7.42223 8.14074 8.16720 8.77126 9.39858 10.94910 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.027453 B = 0.004962 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.687626 B = 5641.108057 C = 6062.467446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.089 3.911 3 Si 0.874 3.126 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.527 4.527 8 H 0.085 0.915 9 C -0.449 4.449 10 S 2.424 3.576 11 O -0.939 6.939 12 O -0.943 6.943 13 C -0.625 4.625 14 H 0.163 0.837 15 C -0.107 4.107 16 C -0.092 4.092 17 H 0.081 0.919 18 C -0.108 4.108 19 C -0.129 4.129 20 C -0.115 4.115 21 C -0.144 4.144 22 C 0.145 3.855 23 H 0.090 0.910 24 N -0.709 5.709 25 C 0.548 3.452 26 O -0.529 6.529 27 H 0.270 0.730 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.319 -8.959 2.398 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.117 4.117 3 Si 0.700 3.300 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.175 1.175 7 C -0.566 4.566 8 H 0.103 0.897 9 C -0.584 4.584 10 S 2.605 3.395 11 O -0.937 6.937 12 O -0.941 6.941 13 C -0.729 4.729 14 H 0.181 0.819 15 C -0.144 4.144 16 C -0.111 4.111 17 H 0.099 0.901 18 C -0.146 4.146 19 C -0.166 4.166 20 C -0.153 4.153 21 C -0.182 4.182 22 C 0.040 3.960 23 H 0.108 0.892 24 N -0.361 5.361 25 C 0.333 3.667 26 O -0.406 6.406 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 22.360 -9.318 2.371 24.340 hybrid contribution 1.046 1.784 0.131 2.073 sum 23.406 -7.534 2.503 24.716 Atomic orbital electron populations 1.69868 1.06283 1.27590 1.48501 1.24819 0.94671 0.99036 0.93125 0.86819 0.81312 0.82914 0.78978 1.19833 1.20812 1.17528 1.20149 0.85248 0.96141 1.55046 0.89705 1.28172 1.07585 1.14813 1.07842 1.08392 0.74378 0.81588 0.75095 1.93482 1.78449 1.76096 1.45644 1.93493 1.78445 1.76278 1.45834 1.30873 1.32268 1.04977 1.04753 0.81909 1.21574 0.95568 0.92647 1.04652 1.21111 0.95345 0.99067 0.95587 0.90079 1.21355 0.99342 0.93727 1.00220 1.21654 1.02271 0.97953 0.94714 1.21486 0.99887 0.97089 0.96848 1.22141 1.01602 0.94927 0.99561 1.21092 0.94160 0.85479 0.95237 0.89171 1.45482 1.29358 1.28646 1.32596 1.18735 0.80679 0.84114 0.83199 1.90850 1.49944 1.28894 1.70940 0.92053 0.85734 0.90611 0.89511 0.88704 0.91331 0.90923 0.91508 0.91237 0.91774 0.91392 0.91146 0.90483 0.75862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.09 2.67 5.47 -17.82 -0.10 2.57 16 3 Si 0.87 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.25 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.53 -15.76 9.68 -34.44 -0.33 -16.09 16 8 H 0.09 2.72 7.96 -52.49 -0.42 2.30 16 9 C -0.45 -11.09 3.98 36.01 0.14 -10.95 16 10 S 2.42 51.98 4.04 -107.50 -0.43 51.55 16 11 O -0.94 -22.58 17.97 -57.83 -1.04 -23.62 16 12 O -0.94 -21.96 18.10 -57.83 -1.05 -23.00 16 13 C -0.63 -9.49 2.81 -28.07 -0.08 -9.56 16 14 H 0.16 1.99 8.14 -51.92 -0.42 1.57 16 15 C -0.11 -1.28 4.11 -26.63 -0.11 -1.39 16 16 C -0.09 -0.80 2.26 -91.14 -0.21 -1.01 16 17 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 18 C -0.11 -0.72 5.41 -27.11 -0.15 -0.86 16 19 C -0.13 -0.88 5.71 -26.70 -0.15 -1.04 16 20 C -0.12 -0.77 5.92 -26.75 -0.16 -0.93 16 21 C -0.14 -1.26 5.20 -26.72 -0.14 -1.40 16 22 C 0.15 1.26 3.26 -68.14 -0.22 1.04 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 24 N -0.71 -8.28 5.03 -54.60 -0.27 -8.56 16 25 C 0.55 8.72 7.16 -11.92 -0.09 8.63 16 26 O -0.53 -10.54 13.92 5.55 0.08 -10.46 16 27 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 28 H 0.13 3.11 4.40 -51.92 -0.23 2.89 16 29 H 0.08 1.69 7.57 -51.92 -0.39 1.30 16 30 H 0.09 1.09 5.40 -51.93 -0.28 0.81 16 31 H 0.09 1.00 8.13 -51.93 -0.42 0.58 16 32 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.56 6.98 -51.93 -0.36 0.20 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.87 6.52 -51.93 -0.34 0.53 16 40 H 0.40 4.11 8.81 -40.82 -0.36 3.75 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -37.45 319.49 -9.15 -46.60 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.77 Total: 3.25 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: -1.59 Total: -30.99 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.50 Total: -35.40 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -2.01 Total: -57.09 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Atomic # 16 Polarization: 51.98 SS G_CDS: -0.43 Total: 51.55 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -37.45 -9.15 -46.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905268268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.845 kcal (2) G-P(sol) polarization free energy of solvation -37.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds