Wall clock time and date at job start Fri Apr 10 2020 17:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99967 * 2 1 4 4 H 1.48501 * 109.46819 * 239.99782 * 3 2 1 5 5 H 1.48500 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47359 * 119.99908 * 3 2 1 7 7 C 1.37880 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00013 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.87738 * 62.38569 * 9 7 2 11 11 C 1.55139 * 110.99265 * 298.54381 * 9 7 2 12 12 C 1.54321 * 103.01830 * 206.25716 * 11 9 7 13 13 N 1.47438 * 107.23638 * 22.27895 * 12 11 9 14 14 C 1.38992 * 111.00140 * 123.25550 * 13 12 11 15 15 C 1.39280 * 120.05005 * 119.97739 * 14 13 12 16 16 N 1.31993 * 120.03243 * 179.76933 * 15 14 13 17 17 C 1.32135 * 120.15250 * 0.51509 * 16 15 14 18 18 C 1.38914 * 120.10655 * 359.48587 * 17 16 15 19 19 N 1.39802 * 120.02214 * 180.23365 * 18 17 16 20 20 C 1.35843 * 126.10671 * 179.97438 * 19 18 17 21 21 C 1.35280 * 107.61438 * 180.02562 * 20 19 18 22 22 C 1.39957 * 107.96893 * 0.02562 * 21 20 19 23 23 N 1.30815 * 108.36957 * 359.71885 * 22 21 20 24 24 N 1.32660 * 120.05480 * 300.00772 * 14 13 12 25 25 C 1.47846 * 108.56437 * 0.99168 * 13 12 11 26 26 H 0.96996 * 119.99996 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00248 * 297.61431 * 10 9 7 28 28 H 1.08994 * 110.70921 * 87.87338 * 11 9 7 29 29 H 1.08997 * 110.84990 * 324.70557 * 11 9 7 30 30 H 1.08997 * 109.88319 * 262.87118 * 12 11 9 31 31 H 1.09003 * 109.88556 * 141.68870 * 12 11 9 32 32 H 1.08000 * 119.98381 * 0.05304 * 15 14 13 33 33 H 1.07998 * 119.94744 * 179.76329 * 17 16 15 34 34 H 1.07996 * 126.19211 * 0.03010 * 20 19 18 35 35 H 1.08001 * 126.01310 * 180.02562 * 21 20 19 36 36 H 1.07999 * 125.81123 * 180.02562 * 22 21 20 37 37 H 1.09002 * 110.37740 * 94.73537 * 25 13 12 38 38 H 1.09003 * 110.37076 * 217.07160 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4610 -2.6310 -1.1828 11 6 0.3733 -2.6341 1.2726 12 6 0.2532 -4.1622 1.4515 13 7 1.3918 -4.7758 0.7437 14 6 2.1428 -5.5697 1.6025 15 6 2.2986 -6.9284 1.3389 16 7 3.0157 -7.6811 2.1522 17 6 3.5791 -7.1509 3.2234 18 6 3.4276 -5.7964 3.4922 19 7 4.0284 -5.2363 4.6234 20 6 3.9621 -3.9337 5.0030 21 6 4.6744 -3.8034 6.1456 22 6 5.1930 -5.0605 6.4768 23 7 4.8027 -5.9193 5.5704 24 7 2.7118 -5.0347 2.6748 25 6 2.2185 -3.6984 0.1592 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2246 -1.9553 -1.2754 28 1 -0.6076 -2.1864 1.1133 29 1 0.8662 -2.1829 2.1337 30 1 -0.6843 -4.5133 1.0203 31 1 0.2947 -4.4159 2.5108 32 1 1.8363 -7.3654 0.4662 33 1 4.1619 -7.7706 3.8887 34 1 3.4359 -3.1449 4.4861 35 1 4.8176 -2.8901 6.7040 36 1 5.8064 -5.2844 7.3370 37 1 3.0362 -3.4399 0.8321 38 1 2.6076 -4.0034 -0.8123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591977377.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:01 Heat of formation + Delta-G solvation = 110.271558 kcal Electronic energy + Delta-G solvation = -24353.157112 eV Core-core repulsion = 20812.620631 eV Total energy + Delta-G solvation = -3540.536481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.84526 -40.83748 -38.46153 -35.21452 -34.69899 -32.53606 -32.21587 -30.59876 -30.11810 -28.43884 -28.28454 -25.19738 -24.74741 -23.67995 -21.45249 -21.18769 -20.30573 -19.74624 -18.46203 -17.52491 -17.14345 -16.79764 -15.84737 -15.77630 -14.99286 -14.95304 -14.70207 -14.16795 -13.94589 -13.71841 -13.24014 -12.93727 -12.88700 -12.75584 -12.06286 -11.95336 -11.67785 -11.47815 -11.34674 -11.22372 -11.06044 -10.88546 -10.58240 -10.50463 -10.25156 -9.95154 -9.47904 -9.30160 -9.25281 -8.69426 -8.41831 -8.31822 -8.16774 -6.29014 -4.37250 0.41523 0.91941 1.91821 1.95433 2.61822 3.19032 3.24381 3.27221 3.61457 3.74315 4.08234 4.20821 4.24690 4.48043 4.69769 4.83410 4.98647 5.21645 5.28285 5.42848 5.51260 5.58081 5.75211 5.79783 5.86883 5.96816 6.08083 6.29619 6.33252 6.43863 6.64748 6.80044 6.89410 7.08247 7.13236 7.32021 7.34667 7.37388 7.51979 7.72671 7.75442 8.03583 8.64195 9.30739 9.40768 10.78149 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.004915 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.848377 B = 5695.062795 C = 7130.940548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.256 3.744 10 O -0.579 6.579 11 C -0.138 4.138 12 C 0.050 3.950 13 N -0.473 5.473 14 C 0.298 3.702 15 C 0.060 3.940 16 N -0.410 5.410 17 C 0.042 3.958 18 C 0.334 3.666 19 N -0.324 5.324 20 C 0.086 3.914 21 C -0.268 4.268 22 C 0.066 3.934 23 N -0.289 5.289 24 N -0.487 5.487 25 C 0.064 3.936 26 H 0.268 0.732 27 H 0.379 0.621 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.184 0.816 33 H 0.177 0.823 34 H 0.185 0.815 35 H 0.157 0.843 36 H 0.193 0.807 37 H 0.061 0.939 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 -8.715 9.480 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.216 3.784 10 O -0.387 6.387 11 C -0.177 4.177 12 C -0.075 4.075 13 N -0.197 5.197 14 C 0.065 3.935 15 C -0.103 4.103 16 N -0.124 5.124 17 C -0.120 4.120 18 C 0.102 3.898 19 N -0.103 5.103 20 C -0.055 4.055 21 C -0.296 4.296 22 C -0.123 4.123 23 N -0.107 5.107 24 N -0.210 5.210 25 C -0.062 4.062 26 H 0.078 0.922 27 H 0.229 0.771 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.201 0.799 33 H 0.194 0.806 34 H 0.202 0.798 35 H 0.175 0.825 36 H 0.210 0.790 37 H 0.080 0.920 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.999 -10.674 8.516 14.541 hybrid contribution 0.333 3.027 1.158 3.258 sum 5.332 -7.647 9.674 13.435 Atomic orbital electron populations 1.69710 1.05920 1.27663 1.50005 1.24967 0.94983 0.99388 0.93512 0.86527 0.79609 0.82313 0.78831 1.20003 1.21062 1.20150 1.21419 0.93478 0.90443 1.52143 0.92158 1.19477 0.86677 0.90264 0.82008 1.86135 1.51453 1.56790 1.44341 1.23244 1.02871 0.90846 1.00768 1.22915 0.92301 0.96970 0.95363 1.62062 1.07778 1.23597 1.26273 1.21260 0.91166 0.93409 0.87621 1.23658 0.96758 0.90158 0.99745 1.68537 1.05040 1.37032 1.01769 1.23206 1.00654 0.91583 0.96541 1.18729 0.93954 0.90393 0.86761 1.45812 1.39510 1.06853 1.18094 1.23087 0.98984 0.87159 0.96295 1.21674 1.07732 0.99792 1.00378 1.24148 0.98607 0.91479 0.98055 1.77411 1.12011 1.20466 1.00843 1.67902 1.08691 1.39516 1.04875 1.23176 0.95434 0.89149 0.98395 0.92203 0.77122 0.89999 0.92110 0.90562 0.93837 0.79948 0.80553 0.79798 0.82535 0.78984 0.92038 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.96 10.75 55.43 0.60 -22.36 16 2 C 0.07 1.90 5.29 -17.82 -0.09 1.81 16 3 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -13.90 8.27 -34.44 -0.28 -14.18 16 8 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 9 C 0.26 6.09 0.87 -89.64 -0.08 6.01 16 10 O -0.58 -14.37 13.16 -35.23 -0.46 -14.84 16 11 C -0.14 -3.04 5.37 -24.91 -0.13 -3.18 16 12 C 0.05 0.96 6.72 -2.84 -0.02 0.94 16 13 N -0.47 -8.86 5.16 -169.88 -0.88 -9.74 16 14 C 0.30 5.08 5.14 -154.75 -0.80 4.28 16 15 C 0.06 0.88 11.15 -17.10 -0.19 0.69 16 16 N -0.41 -5.98 10.48 -12.72 -0.13 -6.12 16 17 C 0.04 0.61 10.83 -17.17 -0.19 0.42 16 18 C 0.33 5.27 7.55 -154.07 -1.16 4.11 16 19 N -0.32 -4.81 3.81 -12.03 -0.05 -4.86 16 20 C 0.09 1.18 11.12 -16.83 -0.19 0.99 16 21 C -0.27 -2.94 10.80 -39.99 -0.43 -3.37 16 22 C 0.07 0.69 12.02 -17.34 -0.21 0.48 16 23 N -0.29 -3.86 11.85 30.64 0.36 -3.49 16 24 N -0.49 -8.43 8.79 -11.28 -0.10 -8.53 16 25 C 0.06 1.35 5.80 -2.30 -0.01 1.34 16 26 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.38 9.47 7.56 45.56 0.34 9.82 16 28 H 0.08 1.90 7.54 -51.93 -0.39 1.51 16 29 H 0.06 1.40 8.04 -51.93 -0.42 0.98 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.04 0.79 7.29 -51.93 -0.38 0.42 16 32 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.18 2.21 7.69 -52.49 -0.40 1.81 16 34 H 0.18 2.52 8.06 -52.49 -0.42 2.10 16 35 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.19 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.06 1.33 7.20 -51.93 -0.37 0.96 16 38 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 325.70 15.07 4.91 4.91 Total: -1.00 -28.03 325.70 -8.26 -36.29 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -3.70 Total: 13.31 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -3.79 Total: 0.33 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.20 Total: -55.10 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.46 Total: -14.84 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.03 -8.26 -36.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977377.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.564 kcal (2) G-P(sol) polarization free energy of solvation -28.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds