Wall clock time and date at job start Fri Apr 10 2020 17:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99967 * 2 1 4 4 H 1.48501 * 109.46819 * 239.99782 * 3 2 1 5 5 H 1.48500 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47359 * 119.99908 * 3 2 1 7 7 C 1.37880 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00013 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.87738 * 62.38569 * 9 7 2 11 11 C 1.55139 * 110.99265 * 298.54381 * 9 7 2 12 12 C 1.54321 * 103.01830 * 206.25716 * 11 9 7 13 13 N 1.47438 * 107.23638 * 22.27895 * 12 11 9 14 14 C 1.38992 * 111.00140 * 123.25550 * 13 12 11 15 15 C 1.39280 * 120.05005 * 119.97739 * 14 13 12 16 16 N 1.31993 * 120.03243 * 179.76933 * 15 14 13 17 17 C 1.32135 * 120.15250 * 0.51509 * 16 15 14 18 18 C 1.38914 * 120.10655 * 359.48587 * 17 16 15 19 19 N 1.39802 * 120.02214 * 180.23365 * 18 17 16 20 20 C 1.35843 * 126.10671 * 179.97438 * 19 18 17 21 21 C 1.35280 * 107.61438 * 180.02562 * 20 19 18 22 22 C 1.39957 * 107.96893 * 0.02562 * 21 20 19 23 23 N 1.30815 * 108.36957 * 359.71885 * 22 21 20 24 24 N 1.32660 * 120.05480 * 300.00772 * 14 13 12 25 25 C 1.47846 * 108.56437 * 0.99168 * 13 12 11 26 26 H 0.96996 * 119.99996 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00248 * 297.61431 * 10 9 7 28 28 H 1.08994 * 110.70921 * 87.87338 * 11 9 7 29 29 H 1.08997 * 110.84990 * 324.70557 * 11 9 7 30 30 H 1.08997 * 109.88319 * 262.87118 * 12 11 9 31 31 H 1.09003 * 109.88556 * 141.68870 * 12 11 9 32 32 H 1.08000 * 119.98381 * 0.05304 * 15 14 13 33 33 H 1.07998 * 119.94744 * 179.76329 * 17 16 15 34 34 H 1.07996 * 126.19211 * 0.03010 * 20 19 18 35 35 H 1.08001 * 126.01310 * 180.02562 * 21 20 19 36 36 H 1.07999 * 125.81123 * 180.02562 * 22 21 20 37 37 H 1.09002 * 110.37740 * 94.73537 * 25 13 12 38 38 H 1.09003 * 110.37076 * 217.07160 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4610 -2.6310 -1.1828 11 6 0.3733 -2.6341 1.2726 12 6 0.2532 -4.1622 1.4515 13 7 1.3918 -4.7758 0.7437 14 6 2.1428 -5.5697 1.6025 15 6 2.2986 -6.9284 1.3389 16 7 3.0157 -7.6811 2.1522 17 6 3.5791 -7.1509 3.2234 18 6 3.4276 -5.7964 3.4922 19 7 4.0284 -5.2363 4.6234 20 6 3.9621 -3.9337 5.0030 21 6 4.6744 -3.8034 6.1456 22 6 5.1930 -5.0605 6.4768 23 7 4.8027 -5.9193 5.5704 24 7 2.7118 -5.0347 2.6748 25 6 2.2185 -3.6984 0.1592 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2246 -1.9553 -1.2754 28 1 -0.6076 -2.1864 1.1133 29 1 0.8662 -2.1829 2.1337 30 1 -0.6843 -4.5133 1.0203 31 1 0.2947 -4.4159 2.5108 32 1 1.8363 -7.3654 0.4662 33 1 4.1619 -7.7706 3.8887 34 1 3.4359 -3.1449 4.4861 35 1 4.8176 -2.8901 6.7040 36 1 5.8064 -5.2844 7.3370 37 1 3.0362 -3.4399 0.8321 38 1 2.6076 -4.0034 -0.8123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977377.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:57 Heat of formation + Delta-G solvation = 91.161076 kcal Electronic energy + Delta-G solvation = -24353.985805 eV Core-core repulsion = 20812.620631 eV Total energy + Delta-G solvation = -3541.365174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.94322 -41.95068 -40.04611 -36.90119 -35.84792 -34.20819 -33.86712 -31.70271 -31.34248 -30.07812 -29.76939 -26.91429 -25.92818 -25.03687 -22.68395 -22.25127 -21.70662 -21.46503 -19.63858 -19.04812 -18.65601 -17.91437 -17.26303 -17.03586 -16.92016 -16.51833 -15.74881 -15.68568 -15.36776 -14.71281 -14.60932 -14.48263 -14.19081 -13.82262 -13.79317 -13.65315 -13.24866 -13.07011 -12.87918 -12.69958 -12.59414 -12.37615 -12.28937 -12.01327 -11.95273 -11.31562 -11.17953 -10.67256 -10.59969 -10.31011 -10.15065 -9.80362 -9.46803 -8.24517 -6.39776 -0.71150 -0.30363 0.88806 0.92199 1.39793 1.41596 1.48614 1.76619 2.33147 2.42989 2.45655 2.92981 3.00885 3.07024 3.26561 3.64084 3.82321 3.94117 3.99478 4.13322 4.20933 4.26470 4.30008 4.47187 4.62033 4.64009 4.70667 4.91385 4.94123 5.00473 5.13320 5.41612 5.46464 5.48639 5.55005 5.72078 5.76478 5.96195 6.01278 6.11132 6.35760 6.62591 6.63606 7.31299 7.42205 8.80820 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.004915 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.848377 B = 5695.062795 C = 7130.940548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.037 3.963 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.562 4.562 8 H 0.050 0.950 9 C 0.243 3.757 10 O -0.584 6.584 11 C -0.126 4.126 12 C 0.061 3.939 13 N -0.466 5.466 14 C 0.274 3.726 15 C 0.069 3.931 16 N -0.410 5.410 17 C 0.053 3.947 18 C 0.325 3.675 19 N -0.341 5.341 20 C 0.053 3.947 21 C -0.250 4.250 22 C 0.079 3.921 23 N -0.309 5.309 24 N -0.508 5.508 25 C 0.075 3.925 26 H 0.270 0.730 27 H 0.375 0.625 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.207 0.793 33 H 0.196 0.804 34 H 0.172 0.828 35 H 0.186 0.814 36 H 0.239 0.761 37 H 0.051 0.949 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -9.429 11.008 15.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.164 4.164 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.601 4.601 8 H 0.068 0.932 9 C 0.203 3.797 10 O -0.392 6.392 11 C -0.165 4.165 12 C -0.065 4.065 13 N -0.189 5.189 14 C 0.042 3.958 15 C -0.092 4.092 16 N -0.123 5.123 17 C -0.109 4.109 18 C 0.092 3.908 19 N -0.120 5.120 20 C -0.087 4.087 21 C -0.278 4.278 22 C -0.110 4.110 23 N -0.128 5.128 24 N -0.231 5.231 25 C -0.051 4.051 26 H 0.080 0.920 27 H 0.224 0.776 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.223 0.777 33 H 0.213 0.787 34 H 0.189 0.811 35 H 0.203 0.797 36 H 0.255 0.745 37 H 0.069 0.931 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.080 -11.396 10.047 16.364 hybrid contribution 0.087 3.247 0.826 3.351 sum 6.166 -8.149 10.873 14.921 Atomic orbital electron populations 1.69784 1.06647 1.28316 1.49783 1.25590 0.95793 1.01933 0.93092 0.85662 0.78571 0.79069 0.78629 1.20059 1.20332 1.19911 1.21662 0.93279 0.92024 1.53087 0.93202 1.19626 0.87228 0.90700 0.82163 1.86123 1.51426 1.56563 1.45067 1.22991 1.01287 0.92998 0.99246 1.22794 0.93125 0.94646 0.95975 1.61971 1.07534 1.22391 1.27021 1.21263 0.92510 0.93959 0.88086 1.23911 0.96103 0.89098 1.00133 1.68638 1.05116 1.36692 1.01866 1.23510 0.99820 0.91230 0.96370 1.18910 0.93928 0.90861 0.87070 1.45919 1.40448 1.07241 1.18367 1.23216 1.00727 0.86967 0.97839 1.22077 1.05625 1.01127 0.98976 1.24949 0.97405 0.90546 0.98090 1.77405 1.12574 1.21408 1.01384 1.67762 1.09393 1.40521 1.05399 1.22909 0.94817 0.89107 0.98249 0.92037 0.77595 0.91534 0.93910 0.89390 0.93209 0.77660 0.78722 0.81096 0.79724 0.74544 0.93094 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.09 10.75 21.45 0.23 -46.86 16 2 C 0.04 1.93 5.29 84.66 0.45 2.38 16 3 Si 0.96 41.44 29.54 68.60 2.03 43.47 16 4 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.56 -29.84 8.27 25.60 0.21 -29.62 16 8 H 0.05 2.67 7.79 -2.91 -0.02 2.65 16 9 C 0.24 11.82 0.87 -10.16 -0.01 11.81 16 10 O -0.58 -29.52 13.16 -148.98 -1.96 -31.48 16 11 C -0.13 -5.70 5.37 31.78 0.17 -5.53 16 12 C 0.06 2.31 6.72 86.65 0.58 2.90 16 13 N -0.47 -17.44 5.16 -691.38 -3.57 -21.01 16 14 C 0.27 9.25 5.14 133.02 0.68 9.93 16 15 C 0.07 1.95 11.15 84.92 0.95 2.90 16 16 N -0.41 -11.30 10.48 -194.17 -2.04 -13.33 16 17 C 0.05 1.46 10.83 84.81 0.92 2.38 16 18 C 0.33 10.14 7.55 132.65 1.00 11.14 16 19 N -0.34 -9.89 3.81 -191.99 -0.73 -10.62 16 20 C 0.05 1.42 11.12 83.39 0.93 2.35 16 21 C -0.25 -4.91 10.80 22.00 0.24 -4.67 16 22 C 0.08 1.40 12.02 85.26 1.02 2.42 16 23 N -0.31 -7.65 11.85 -56.98 -0.68 -8.33 16 24 N -0.51 -17.71 8.79 -189.61 -1.67 -19.38 16 25 C 0.08 3.25 5.80 86.77 0.50 3.76 16 26 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 27 H 0.38 19.19 7.56 -74.06 -0.56 18.63 16 28 H 0.07 3.17 7.54 -2.39 -0.02 3.15 16 29 H 0.04 2.04 8.04 -2.39 -0.02 2.02 16 30 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.05 1.82 7.29 -2.39 -0.02 1.81 16 32 H 0.21 4.68 8.06 -2.91 -0.02 4.66 16 33 H 0.20 4.52 7.69 -2.91 -0.02 4.50 16 34 H 0.17 4.91 8.06 -2.91 -0.02 4.89 16 35 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.24 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.05 2.28 7.20 -2.39 -0.02 2.26 16 38 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -60.57 325.70 -0.19 -60.76 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.54 Total: 34.62 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 7.65 Total: 12.16 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -8.44 Total: -119.53 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -1.96 Total: -31.48 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -60.57 -0.19 -60.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977377.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.925 kcal (2) G-P(sol) polarization free energy of solvation -60.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds