Wall clock time and date at job start Fri Apr 10 2020 17:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 119.99819 * 2 1 4 4 C 1.52999 * 109.47202 * 274.30225 * 3 2 1 5 5 C 1.47195 * 109.46919 * 184.93097 * 4 3 2 6 6 N 4.80194 * 119.65282 * 339.56141 * 2 1 3 7 7 S 1.65592 * 119.99982 * 180.02562 * 2 1 3 8 8 O 1.42103 * 106.40515 * 161.41691 * 7 2 1 9 9 O 1.42097 * 106.40657 * 28.49399 * 7 2 1 10 10 N 1.65604 * 107.22105 * 274.95349 * 7 2 1 11 11 C 1.46919 * 120.63235 * 265.28974 * 10 7 2 12 12 C 1.53187 * 108.78194 * 126.38813 * 11 10 7 13 13 C 1.53040 * 109.31420 * 54.62993 * 12 11 10 14 14 C 1.53050 * 109.54013 * 298.64261 * 13 12 11 15 15 H 1.09004 * 109.48972 * 301.37890 * 14 13 12 16 16 C 1.50694 * 109.49984 * 181.31449 * 14 13 12 17 17 H 1.07998 * 120.00253 * 245.46736 * 16 14 13 18 18 C 1.37879 * 120.00194 * 65.46280 * 16 14 13 19 19 N 1.31517 * 119.99764 * 8.54004 * 18 16 14 20 20 Si 1.86795 * 120.00226 * 188.54106 * 18 16 14 21 21 H 1.48502 * 109.47181 * 94.99006 * 20 18 16 22 22 H 1.48498 * 109.47363 * 214.99061 * 20 18 16 23 23 H 1.48496 * 109.47065 * 334.98794 * 20 18 16 24 24 C 1.46931 * 120.62934 * 85.28081 * 10 7 2 25 25 H 1.09001 * 109.46813 * 269.99372 * 1 2 3 26 26 H 1.08991 * 109.47461 * 29.99615 * 1 2 3 27 27 H 1.09003 * 109.46779 * 149.99886 * 1 2 3 28 28 H 1.09002 * 109.47018 * 34.30665 * 3 2 1 29 29 H 1.09001 * 109.46986 * 154.29719 * 3 2 1 30 30 H 1.08996 * 109.47112 * 304.93619 * 4 3 2 31 31 H 1.09006 * 109.46833 * 64.93704 * 4 3 2 32 32 H 1.08998 * 109.58629 * 6.59451 * 11 10 7 33 33 H 1.09003 * 109.58617 * 246.17515 * 11 10 7 34 34 H 1.09000 * 109.49409 * 294.68160 * 12 11 10 35 35 H 1.08992 * 109.50306 * 174.58555 * 12 11 10 36 36 H 1.09003 * 109.45845 * 58.65737 * 13 12 11 37 37 H 1.08999 * 109.46482 * 178.62151 * 13 12 11 38 38 H 0.96997 * 120.00085 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.58516 * 113.82344 * 24 10 7 40 40 H 1.09006 * 109.70353 * 353.46848 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3588 1.7645 -1.4384 5 6 3.1952 2.9757 -1.4490 6 7 3.8408 3.9104 -1.4573 7 16 2.2930 -1.4341 -0.0006 8 8 3.6127 -1.1354 -0.4349 9 8 1.4562 -2.3804 -0.6514 10 7 2.4199 -1.9277 1.5750 11 6 3.6161 -1.6078 2.3657 12 6 3.1807 -0.9141 3.6603 13 6 2.1628 -1.7947 4.3887 14 6 0.9281 -1.9879 3.5052 15 1 0.4940 -1.0162 3.2693 16 6 -0.0870 -2.8282 4.2362 17 1 -0.3447 -3.8089 3.8643 18 6 -0.6868 -2.3452 5.3798 19 7 -0.5032 -1.0938 5.7404 20 14 -1.7601 -3.4682 6.4172 21 1 -0.9489 -4.0528 7.5151 22 1 -2.8828 -2.6858 6.9939 23 1 -2.3020 -4.5587 5.5674 24 6 1.3381 -2.6937 2.2089 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5137 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6440 2.0078 0.5792 29 1 3.1811 1.1204 0.4457 30 1 2.8345 0.9891 -2.0388 31 1 1.3785 1.9964 -1.8549 32 1 4.2643 -0.9428 1.7950 33 1 4.1519 -2.5262 2.6057 34 1 2.7257 0.0474 3.4225 35 1 4.0497 -0.7578 4.2993 36 1 2.6104 -2.7649 4.6042 37 1 1.8697 -1.3147 5.3224 38 1 -0.9254 -0.7539 6.5447 39 1 1.6880 -3.7007 2.4361 40 1 0.4824 -2.7474 1.5357 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594802508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:09 Heat of formation + Delta-G solvation = -76.249264 kcal Electronic energy + Delta-G solvation = -23756.927350 eV Core-core repulsion = 20311.453919 eV Total energy + Delta-G solvation = -3445.473431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.25620 -38.55951 -38.25944 -37.01311 -36.88347 -35.11225 -32.72934 -32.23391 -31.82000 -27.42201 -26.94918 -25.19274 -24.31613 -23.27232 -21.12088 -19.70387 -19.01878 -18.81815 -18.19436 -17.96209 -17.29147 -16.58605 -16.07238 -15.74238 -15.32420 -15.21237 -15.02282 -14.81014 -14.42613 -14.38640 -14.20905 -13.92320 -13.78561 -13.58869 -13.44615 -13.26013 -12.96448 -12.86183 -12.79397 -12.77741 -12.64654 -12.52184 -12.45985 -11.89435 -11.83253 -11.74970 -11.51637 -11.09083 -10.70660 -10.37527 -10.08674 -9.72532 -8.07743 -6.15010 -0.40903 1.44320 1.48212 1.55944 1.70394 1.82658 1.88804 2.46153 2.49946 3.08424 3.24063 3.33114 3.76242 3.90339 4.06244 4.27530 4.31344 4.36348 4.52194 4.60553 4.63504 4.73781 4.77298 4.85449 4.91643 4.99419 5.02343 5.11652 5.13113 5.16985 5.32453 5.37807 5.51121 5.63628 5.71729 5.79793 6.04449 6.09383 6.43856 6.59617 6.96765 7.51756 8.99769 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.004534 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.775763 B = 6173.979333 C = 6356.566462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -1.001 6.001 3 C 0.123 3.877 4 C -0.044 4.044 5 C 0.242 3.758 6 N -0.493 5.493 7 S 2.793 3.207 8 O -0.991 6.991 9 O -1.002 7.002 10 N -1.005 6.005 11 C 0.123 3.877 12 C -0.125 4.125 13 C -0.098 4.098 14 C 0.040 3.960 15 H 0.015 0.985 16 C -0.534 4.534 17 H 0.054 0.946 18 C 0.024 3.976 19 N -0.912 5.912 20 Si 0.941 3.059 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.269 1.269 24 C 0.140 3.860 25 H 0.048 0.952 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.041 0.959 38 H 0.259 0.741 39 H 0.057 0.943 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.604 3.346 -10.757 11.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.841 5.841 3 C -0.004 4.004 4 C -0.085 4.085 5 C -0.075 4.075 6 N -0.171 5.171 7 S 2.803 3.197 8 O -0.975 6.975 9 O -0.986 6.986 10 N -0.845 5.845 11 C -0.002 4.002 12 C -0.164 4.164 13 C -0.137 4.137 14 C 0.021 3.979 15 H 0.033 0.967 16 C -0.573 4.573 17 H 0.072 0.928 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.768 3.232 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.193 1.193 24 C 0.015 3.985 25 H 0.067 0.933 26 H 0.132 0.868 27 H 0.093 0.907 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.136 0.864 31 H 0.168 0.832 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.842 4.395 -11.420 13.159 hybrid contribution -1.112 -0.720 1.390 1.920 sum 3.730 3.675 -10.030 11.314 Atomic orbital electron populations 1.21791 0.76905 1.05372 1.02650 1.57638 1.16324 1.20892 1.89199 1.21269 0.97855 0.85800 0.95499 1.19947 0.99966 0.88546 1.00086 1.29286 0.92597 0.93843 0.91810 1.81268 1.11997 1.13871 1.09952 1.01545 0.72463 0.72985 0.72742 1.93555 1.38020 1.85243 1.80703 1.93556 1.69863 1.61363 1.73811 1.58012 1.26648 1.68347 1.31444 1.21513 0.85358 1.00780 0.92542 1.21879 0.99201 0.98786 0.96506 1.21344 0.95576 0.97442 0.99321 1.18891 0.92757 0.95268 0.91030 0.96679 1.21477 1.23310 1.02529 1.09960 0.92814 1.25537 0.97469 0.95763 0.98757 1.70053 1.45390 1.14558 1.25058 0.85803 0.78619 0.79454 0.79313 1.20684 1.21328 1.19304 1.21430 0.87310 0.94310 0.95472 0.93302 0.86826 0.90700 0.87206 0.89730 0.86426 0.83162 0.88290 0.90749 0.92536 0.90458 0.94705 0.94057 0.93190 0.92435 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 10.70 127.77 1.37 2.86 16 2 N -1.00 -21.09 3.24 -539.12 -1.75 -22.83 16 3 C 0.12 1.98 5.29 86.38 0.46 2.44 16 4 C -0.04 -0.53 6.03 28.79 0.17 -0.36 16 5 C 0.24 4.51 15.43 89.44 1.38 5.89 16 6 N -0.49 -12.63 18.54 20.00 0.37 -12.26 16 7 S 2.79 79.18 6.06 -56.49 -0.34 78.84 16 8 O -0.99 -29.19 15.53 -128.00 -1.99 -31.18 16 9 O -1.00 -33.92 15.72 -128.00 -2.01 -35.94 16 10 N -1.00 -31.47 3.35 -513.08 -1.72 -33.19 16 11 C 0.12 3.47 6.40 86.36 0.55 4.02 16 12 C -0.12 -3.94 6.08 30.67 0.19 -3.76 16 13 C -0.10 -4.08 5.02 30.62 0.15 -3.93 16 14 C 0.04 1.79 2.12 -11.46 -0.02 1.77 16 15 H 0.02 0.73 8.10 -2.39 -0.02 0.71 16 16 C -0.53 -26.98 8.49 25.60 0.22 -26.76 16 17 H 0.05 2.69 7.76 -2.91 -0.02 2.67 16 18 C 0.02 1.26 5.21 84.65 0.44 1.70 16 19 N -0.91 -49.22 12.11 21.45 0.26 -48.96 16 20 Si 0.94 41.30 29.55 68.60 2.03 43.33 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 22 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 C 0.14 5.23 5.58 86.36 0.48 5.71 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.11 1.25 8.07 -2.39 -0.02 1.23 16 27 H 0.07 1.57 7.07 -2.39 -0.02 1.55 16 28 H 0.11 1.42 8.10 -2.39 -0.02 1.40 16 29 H 0.08 1.48 7.50 -2.39 -0.02 1.46 16 30 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.15 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.10 2.38 7.00 -2.39 -0.02 2.36 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.04 1.98 6.84 -2.39 -0.02 1.96 16 38 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 2.67 7.27 -2.38 -0.02 2.66 16 Total: -1.00 -66.55 342.91 1.27 -65.29 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.03 Total: 7.33 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 5.39 Total: -10.43 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -2.83 Total: -117.24 kcal Atomic # 8 Polarization: -63.11 SS G_CDS: -4.00 Total: -67.11 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 79.18 SS G_CDS: -0.34 Total: 78.84 kcal Total: -66.55 1.27 -65.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594802508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.963 kcal (2) G-P(sol) polarization free energy of solvation -66.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds