Wall clock time and date at job start Fri Apr 10 2020 17:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40170 * 120.36302 * 2 1 4 4 N 1.31265 * 120.35789 * 179.97438 * 3 2 1 5 5 C 1.33987 * 120.87778 * 359.96750 * 4 3 2 6 6 N 1.32497 * 132.33848 * 179.72223 * 5 4 3 7 7 C 1.33480 * 109.75025 * 179.91443 * 6 5 4 8 8 C 1.48130 * 125.32075 * 180.14744 * 7 6 5 9 9 O 1.21525 * 119.99199 * 175.04171 * 8 7 6 10 10 N 1.34774 * 119.99964 * 355.04946 * 8 7 6 11 11 C 1.46499 * 119.99537 * 185.57041 * 10 8 7 12 12 C 1.52997 * 109.47036 * 185.19099 * 11 10 8 13 13 C 1.50698 * 115.54850 * 57.84425 * 12 11 10 14 14 H 1.08008 * 119.99891 * 264.63308 * 13 12 11 15 15 C 1.37875 * 120.00561 * 84.63838 * 13 12 11 16 16 N 1.31520 * 119.99772 * 1.95936 * 15 13 12 17 17 Si 1.86800 * 120.00488 * 181.96595 * 15 13 12 18 18 H 1.48496 * 109.47139 * 89.99370 * 17 15 13 19 19 H 1.48493 * 109.47301 * 209.99819 * 17 15 13 20 20 H 1.48507 * 109.46941 * 329.99605 * 17 15 13 21 21 C 1.52994 * 117.50133 * 272.16869 * 12 11 10 22 22 C 1.53002 * 117.49965 * 203.50771 * 12 11 10 23 23 N 1.31986 * 109.35053 * 0.37985 * 7 6 5 24 24 N 1.36869 * 120.22711 * 0.03496 * 5 4 3 25 25 C 1.35682 * 120.36641 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47196 * 270.02132 * 1 2 3 27 27 H 1.08999 * 109.47385 * 30.02126 * 1 2 3 28 28 H 1.08998 * 109.46814 * 150.02008 * 1 2 3 29 29 H 1.07996 * 119.82638 * 359.97438 * 3 2 1 30 30 H 0.97000 * 120.00301 * 5.56053 * 10 8 7 31 31 H 1.09007 * 109.47243 * 305.18883 * 11 10 8 32 32 H 1.09004 * 109.47498 * 65.19269 * 11 10 8 33 33 H 0.97000 * 119.99657 * 185.02335 * 16 15 13 34 34 H 1.09001 * 117.50053 * 0.02562 * 21 12 11 35 35 H 1.09007 * 117.49995 * 145.01853 * 21 12 11 36 36 H 1.08997 * 117.49951 * 214.98086 * 22 12 11 37 37 H 1.09002 * 117.49586 * 359.97438 * 22 12 11 38 38 H 1.08001 * 120.48256 * 0.04805 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2155 1.2094 0.0000 4 7 3.5281 1.2093 0.0005 5 6 4.2157 0.0593 0.0017 6 7 5.5142 -0.2041 -0.0024 7 6 5.7065 -1.5250 0.0031 8 6 7.0260 -2.1983 0.0041 9 8 7.0906 -3.4080 0.1002 10 7 8.1546 -1.4693 -0.1016 11 6 9.4512 -2.1403 -0.2236 12 6 10.5698 -1.0969 -0.1970 13 6 10.6125 -0.2207 1.0283 14 1 10.1355 0.7483 1.0162 15 6 11.2604 -0.6559 2.1649 16 7 11.8743 -1.8190 2.1673 17 14 11.2663 0.4064 3.7014 18 1 10.0902 0.0673 4.5422 19 1 12.5124 0.1582 4.4700 20 1 11.2010 1.8384 3.3134 21 6 10.9812 -0.4681 -1.5298 22 6 11.9049 -1.4760 -0.8412 23 7 4.5372 -2.1372 0.0025 24 7 3.5542 -1.1389 0.0017 25 6 2.1929 -1.1707 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6786 2.1465 -0.0004 30 1 8.1084 -0.5004 -0.0970 31 1 9.5812 -2.8335 0.6075 32 1 9.4890 -2.6896 -1.1643 33 1 12.2674 -2.1582 2.9866 34 1 10.4546 -0.7975 -2.4255 35 1 11.2830 0.5793 -1.5203 36 1 12.8139 -1.0913 -0.3789 37 1 11.9863 -2.4689 -1.2835 38 1 1.6668 -2.1139 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597609856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:42 Heat of formation + Delta-G solvation = 127.954360 kcal Electronic energy + Delta-G solvation = -23330.582566 eV Core-core repulsion = 19790.812869 eV Total energy + Delta-G solvation = -3539.769697 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.10878 -39.65961 -38.56612 -36.65653 -34.99484 -33.60710 -33.16894 -31.92393 -30.96165 -28.14208 -26.58119 -25.56322 -25.14018 -23.32615 -23.02257 -21.13374 -19.99427 -19.40076 -18.75406 -18.22241 -17.12157 -16.90843 -16.06739 -15.95641 -14.97432 -14.81924 -14.59785 -14.53484 -14.06479 -13.88698 -13.66054 -13.11901 -12.98277 -12.81608 -12.76176 -12.68768 -12.14463 -11.77204 -11.55995 -10.94603 -10.87847 -10.49214 -10.45137 -10.33867 -10.22729 -9.95134 -9.83345 -9.47396 -9.02966 -9.01446 -8.46478 -8.36086 -8.07189 -6.04069 -4.12599 0.03989 0.33766 1.52632 1.80033 2.88611 2.97741 3.30707 3.31867 3.38768 3.41646 3.60408 3.86897 3.89062 4.18017 4.41068 4.51504 4.58262 4.93578 4.98154 5.17132 5.25054 5.31755 5.37395 5.48033 5.75856 5.83056 5.89599 6.03632 6.32995 6.46584 6.51245 6.72845 6.81036 7.07485 7.12792 7.13532 7.39123 7.50931 7.59434 7.86592 8.16266 8.36546 8.62935 8.89517 9.55068 11.04101 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.003504 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.343039 B = 7988.618259 C = 8551.450109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.190 4.190 3 C 0.209 3.791 4 N -0.442 5.442 5 C 0.435 3.565 6 N -0.490 5.490 7 C 0.252 3.748 8 C 0.596 3.404 9 O -0.523 6.523 10 N -0.667 5.667 11 C 0.161 3.839 12 C 0.023 3.977 13 C -0.498 4.498 14 H 0.062 0.938 15 C 0.074 3.926 16 N -0.876 5.876 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C -0.210 4.210 22 C -0.141 4.141 23 N -0.273 5.273 24 N -0.327 5.327 25 C 0.167 3.833 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.191 0.809 30 H 0.415 0.585 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.449 4.535 -5.257 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.197 4.197 3 C 0.021 3.979 4 N -0.155 5.155 5 C 0.074 3.926 6 N -0.223 5.223 7 C -0.032 4.032 8 C 0.374 3.626 9 O -0.397 6.397 10 N -0.316 5.316 11 C 0.038 3.962 12 C 0.022 3.978 13 C -0.535 4.535 14 H 0.080 0.920 15 C -0.130 4.130 16 N -0.512 5.512 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.248 4.248 22 C -0.180 4.180 23 N -0.106 5.106 24 N -0.107 5.107 25 C 0.030 3.970 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.208 0.792 30 H 0.251 0.749 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -22.061 3.628 -5.112 22.934 hybrid contribution -0.725 0.357 1.000 1.286 sum -22.786 3.986 -4.112 23.495 Atomic orbital electron populations 1.20618 0.87088 1.04204 1.03536 1.20632 0.99299 0.92087 1.07726 1.23605 0.88119 0.98869 0.87306 1.68089 1.08658 1.22462 1.16334 1.22730 0.89420 0.82867 0.97585 1.70934 1.10589 1.13949 1.26869 1.24605 0.95313 0.87496 0.95740 1.16384 0.80800 0.85952 0.79456 1.90816 1.85834 1.12785 1.50261 1.45767 1.05290 1.11519 1.69028 1.21182 0.79847 0.95240 0.99890 1.19012 0.91742 0.95862 0.91170 1.20379 1.35022 1.02410 0.95732 0.91968 1.24971 0.94029 0.95300 0.98688 1.69991 1.35324 1.18620 1.27238 0.86635 0.77418 0.81007 0.83288 1.20665 1.21242 1.19700 1.23062 1.06903 0.98187 0.96612 1.22476 0.96039 0.96600 1.02838 1.78960 0.95234 1.06775 1.29642 1.49071 1.07015 1.08951 1.45703 1.22016 0.79446 1.01549 0.93951 0.90095 0.89970 0.90602 0.79212 0.74875 0.90302 0.93850 0.92905 0.91589 0.90212 0.89483 0.91692 0.79991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.13 10.03 36.00 0.36 0.23 16 2 C -0.19 -1.05 5.87 -104.81 -0.61 -1.66 16 3 C 0.21 1.45 10.96 -17.07 -0.19 1.27 16 4 N -0.44 -5.62 10.48 -13.79 -0.14 -5.77 16 5 C 0.43 6.92 8.98 -323.05 -2.90 4.02 16 6 N -0.49 -9.28 10.90 -12.23 -0.13 -9.41 16 7 C 0.25 4.97 7.92 -156.78 -1.24 3.73 16 8 C 0.60 12.90 7.83 -12.20 -0.10 12.80 16 9 O -0.52 -12.54 17.05 5.34 0.09 -12.44 16 10 N -0.67 -14.38 5.37 -61.16 -0.33 -14.71 16 11 C 0.16 3.72 5.57 -4.04 -0.02 3.70 16 12 C 0.02 0.55 1.51 -155.66 -0.23 0.32 16 13 C -0.50 -13.19 8.38 -34.44 -0.29 -13.48 16 14 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 15 C 0.07 2.01 5.43 -17.82 -0.10 1.92 16 16 N -0.88 -24.66 12.73 55.43 0.71 -23.95 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 21 C -0.21 -4.47 9.94 -26.70 -0.27 -4.73 16 22 C -0.14 -3.26 9.26 -26.69 -0.25 -3.50 16 23 N -0.27 -4.92 12.78 32.02 0.41 -4.51 16 24 N -0.33 -4.66 3.91 -13.80 -0.05 -4.71 16 25 C 0.17 1.40 10.97 -16.54 -0.18 1.22 16 26 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 27 H 0.08 0.00 8.10 -51.93 -0.42 -0.42 16 28 H 0.08 0.05 8.09 -51.93 -0.42 -0.37 16 29 H 0.19 0.44 8.06 -52.49 -0.42 0.02 16 30 H 0.41 8.72 7.92 -40.82 -0.32 8.40 16 31 H 0.08 2.05 8.09 -51.93 -0.42 1.63 16 32 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 33 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 37 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -34.57 339.99 -9.88 -44.44 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.51 Total: 3.85 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -6.02 Total: 5.81 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 0.45 Total: -63.07 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.57 -9.88 -44.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597609856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.398 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds