Wall clock time and date at job start Fri Apr 10 2020 17:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00376 * 2 1 4 4 C 1.53001 * 109.47058 * 180.02562 * 3 2 1 5 5 N 1.46488 * 109.47149 * 65.00511 * 4 3 2 6 6 C 1.36825 * 119.99959 * 274.20239 * 5 4 3 7 7 H 1.08008 * 119.99700 * 123.69515 * 6 5 4 8 8 C 1.39066 * 120.00231 * 303.69816 * 6 5 4 9 9 N 1.31350 * 119.99768 * 4.18448 * 8 6 5 10 10 Si 1.86802 * 120.00151 * 184.19020 * 8 6 5 11 11 H 1.48491 * 109.46993 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47242 * 119.99940 * 10 8 6 13 13 H 1.48507 * 109.46790 * 239.99801 * 10 8 6 14 14 C 1.34776 * 120.00321 * 94.20518 * 5 4 3 15 15 O 1.21655 * 120.00086 * 3.20126 * 14 5 4 16 16 C 1.46958 * 120.00271 * 183.20710 * 14 5 4 17 17 C 1.31684 * 118.11254 * 172.48003 * 16 14 5 18 18 C 1.50098 * 123.77046 * 179.56071 * 17 16 14 19 19 H 1.08992 * 109.36280 * 137.25907 * 18 17 16 20 20 O 1.42912 * 109.35517 * 256.98213 * 18 17 16 21 21 C 1.53008 * 110.02687 * 17.11621 * 18 17 16 22 22 H 1.08997 * 109.62498 * 70.00912 * 21 18 17 23 23 O 1.42898 * 109.62779 * 190.59526 * 21 18 17 24 24 C 1.53034 * 108.68173 * 310.20986 * 21 18 17 25 25 H 1.09006 * 109.78747 * 308.32162 * 24 21 18 26 26 O 1.42898 * 109.67478 * 187.80942 * 24 21 18 27 27 C 1.50100 * 118.11244 * 352.49405 * 16 14 5 28 28 H 1.09005 * 109.47057 * 300.00182 * 1 2 3 29 29 H 1.09004 * 109.47160 * 59.99338 * 1 2 3 30 30 H 1.08994 * 109.47352 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46395 * 60.00629 * 3 2 1 32 32 H 1.08995 * 109.47326 * 300.00724 * 3 2 1 33 33 H 1.08998 * 109.47090 * 305.00243 * 4 3 2 34 34 H 1.08997 * 109.46940 * 185.00740 * 4 3 2 35 35 H 0.97005 * 119.99761 * 180.02562 * 9 8 6 36 36 H 1.08000 * 118.11524 * 359.57391 * 17 16 14 37 37 H 0.96699 * 114.00152 * 300.27222 * 20 18 17 38 38 H 0.96698 * 114.00125 * 300.00033 * 23 21 18 39 39 H 0.96695 * 114.00264 * 180.99850 * 26 24 21 40 40 H 1.09001 * 109.35609 * 317.37773 * 27 16 14 41 41 H 1.08993 * 109.36024 * 76.96911 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0142 -0.7988 -1.3644 7 1 3.4668 -1.2915 -2.1545 8 6 4.7579 -1.5498 -0.4608 9 7 5.3564 -0.9590 0.5483 10 14 4.9061 -3.3988 -0.6820 11 1 4.1443 -3.8157 -1.8864 12 1 6.3357 -3.7644 -0.8487 13 1 4.3556 -4.0860 0.5139 14 6 4.3427 1.3365 -2.2946 15 8 4.3644 2.5471 -2.1766 16 6 4.7167 0.7161 -3.5732 17 6 4.9228 1.5037 -4.6082 18 6 5.3183 1.0075 -5.9685 19 1 4.7495 1.5435 -6.7282 20 8 6.7140 1.2398 -6.1701 21 6 5.0317 -0.4911 -6.0834 22 1 3.9548 -0.6568 -6.1106 23 8 5.6304 -1.0043 -7.2751 24 6 5.6302 -1.1994 -4.8660 25 1 6.6758 -0.9138 -4.7500 26 8 5.5356 -2.6148 -5.0382 27 6 4.8415 -0.7788 -3.6242 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8462 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5680 0.8409 34 1 3.9786 2.1763 0.0891 35 1 5.8755 -1.4829 1.1784 36 1 4.8004 2.5678 -4.4704 37 1 6.9697 2.1707 -6.1155 38 1 5.3076 -0.5904 -8.0872 39 1 5.8835 -3.1256 -4.2945 40 1 5.3597 -1.1288 -2.7313 41 1 3.8470 -1.2234 -3.6600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597755168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:49 Heat of formation + Delta-G solvation = -212.014490 kcal Electronic energy + Delta-G solvation = -26676.287095 eV Core-core repulsion = 22749.880820 eV Total energy + Delta-G solvation = -3926.406275 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.41043 -39.98787 -38.57556 -37.62089 -36.71979 -36.62759 -35.37040 -33.57307 -31.44454 -30.30656 -29.54661 -27.32776 -26.81496 -24.50265 -24.14761 -22.67047 -21.36114 -20.07934 -19.33891 -18.43812 -17.91823 -17.68477 -17.47711 -17.03069 -16.94448 -16.48563 -16.09895 -15.99858 -15.79533 -15.26863 -15.05163 -14.88872 -14.67267 -14.22048 -14.01282 -13.80179 -13.53724 -13.43842 -13.20213 -12.93927 -12.70958 -12.56295 -12.42186 -12.26138 -11.97249 -11.81377 -11.63181 -11.27210 -10.96172 -10.89967 -10.78176 -10.51426 -10.26897 -10.14921 -9.20096 -8.21243 -6.08055 0.50121 1.45577 1.50912 1.61990 2.29783 2.51053 2.84243 3.01290 3.06746 3.13554 3.25069 3.50267 3.74716 3.97980 4.06075 4.15424 4.23678 4.25411 4.38840 4.44521 4.51651 4.57488 4.60390 4.67258 4.69202 4.76766 4.84084 4.93886 5.13487 5.22692 5.35049 5.42511 5.60761 5.83740 6.13421 6.42238 6.43736 6.79341 6.80983 6.96805 7.13698 7.50650 7.97488 8.79879 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.006455 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.696702 B = 4336.693797 C = 5314.091303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.068 3.932 4 C 0.106 3.894 5 N -0.430 5.430 6 C -0.323 4.323 7 H 0.100 0.900 8 C 0.009 3.991 9 N -0.898 5.898 10 Si 0.960 3.040 11 H -0.241 1.241 12 H -0.273 1.273 13 H -0.287 1.287 14 C 0.490 3.510 15 O -0.636 6.636 16 C -0.108 4.108 17 C -0.158 4.158 18 C 0.124 3.876 19 H 0.108 0.892 20 O -0.560 6.560 21 C 0.121 3.879 22 H 0.083 0.917 23 O -0.558 6.558 24 C 0.110 3.890 25 H 0.049 0.951 26 O -0.566 6.566 27 C -0.101 4.101 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.030 0.970 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.269 0.731 36 H 0.118 0.882 37 H 0.394 0.606 38 H 0.390 0.610 39 H 0.387 0.613 40 H 0.108 0.892 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 0.381 -8.671 9.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.010 4.010 4 C -0.018 4.018 5 N -0.146 5.146 6 C -0.450 4.450 7 H 0.117 0.883 8 C -0.194 4.194 9 N -0.535 5.535 10 Si 0.784 3.216 11 H -0.164 1.164 12 H -0.199 1.199 13 H -0.214 1.214 14 C 0.282 3.718 15 O -0.526 6.526 16 C -0.111 4.111 17 C -0.179 4.179 18 C 0.065 3.935 19 H 0.125 0.875 20 O -0.368 6.368 21 C 0.061 3.939 22 H 0.101 0.899 23 O -0.365 6.365 24 C 0.051 3.949 25 H 0.067 0.933 26 O -0.373 6.373 27 C -0.137 4.137 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.243 0.757 38 H 0.239 0.761 39 H 0.235 0.765 40 H 0.126 0.874 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.283 -0.112 -8.586 9.596 hybrid contribution -0.172 0.582 1.070 1.230 sum -4.456 0.470 -7.516 8.750 Atomic orbital electron populations 1.22881 0.80782 1.03325 1.00147 1.88101 1.20263 1.27520 1.95261 1.22768 0.94205 0.84754 0.99280 1.21501 0.91701 0.97814 0.90775 1.43318 1.54697 1.06474 1.10138 1.19788 1.28324 0.80474 1.16458 0.88254 1.26322 0.94446 1.03712 0.94899 1.69855 1.31739 1.38043 1.13859 0.85350 0.78610 0.78245 0.79441 1.16395 1.19853 1.21367 1.19281 0.79412 0.86181 0.86969 1.90572 1.60784 1.15686 1.85539 1.20816 1.00889 0.96601 0.92804 1.23385 0.99296 1.00336 0.94853 1.21307 0.83788 0.95772 0.92644 0.87477 1.86618 1.22910 1.32953 1.94356 1.21879 0.96906 0.89909 0.85156 0.89945 1.86612 1.68724 1.65226 1.15974 1.21889 0.98298 0.81275 0.93436 0.93294 1.86456 1.86537 1.16945 1.47377 1.21893 1.01837 0.91583 0.98400 0.93169 0.94231 0.88820 0.91647 0.95144 0.89129 0.92297 0.92121 0.86431 0.75668 0.76102 0.76474 0.87418 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.97 16 2 O -0.39 -15.93 9.98 -148.98 -1.49 -17.42 16 3 C 0.07 2.71 6.28 71.98 0.45 3.16 16 4 C 0.11 5.04 5.57 86.38 0.48 5.52 16 5 N -0.43 -21.26 2.42 -639.83 -1.55 -22.81 16 6 C -0.32 -15.42 5.03 84.11 0.42 -15.00 16 7 H 0.10 4.60 5.14 -2.91 -0.01 4.58 16 8 C 0.01 0.44 4.91 84.96 0.42 0.86 16 9 N -0.90 -46.98 11.45 21.68 0.25 -46.73 16 10 Si 0.96 37.74 29.10 68.60 2.00 39.73 16 11 H -0.24 -8.68 7.11 99.48 0.71 -7.98 16 12 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 13 H -0.29 -11.66 7.11 99.48 0.71 -10.96 16 14 C 0.49 23.96 7.55 86.53 0.65 24.62 16 15 O -0.64 -33.56 15.48 -4.20 -0.07 -33.63 16 16 C -0.11 -4.39 5.76 -18.44 -0.11 -4.50 16 17 C -0.16 -5.34 8.99 24.82 0.22 -5.12 16 18 C 0.12 3.25 3.52 29.66 0.10 3.35 16 19 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 20 O -0.56 -14.98 12.57 -133.74 -1.68 -16.66 16 21 C 0.12 3.54 3.03 30.61 0.09 3.63 16 22 H 0.08 2.25 8.12 -2.39 -0.02 2.23 16 23 O -0.56 -15.80 12.77 -124.37 -1.59 -17.39 16 24 C 0.11 3.81 3.23 30.61 0.10 3.91 16 25 H 0.05 1.85 7.77 -2.38 -0.02 1.83 16 26 O -0.57 -19.11 13.09 -135.30 -1.77 -20.88 16 27 C -0.10 -3.83 3.51 29.66 0.10 -3.73 16 28 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 4.70 6.00 -2.39 -0.01 4.69 16 34 H 0.06 2.88 7.26 -2.39 -0.02 2.87 16 35 H 0.27 13.42 8.31 -92.70 -0.77 12.65 16 36 H 0.12 4.10 7.20 -2.91 -0.02 4.08 16 37 H 0.39 7.26 9.07 -74.06 -0.67 6.59 16 38 H 0.39 6.84 9.08 -74.06 -0.67 6.17 16 39 H 0.39 10.67 9.08 -74.06 -0.67 10.00 16 40 H 0.11 4.60 4.82 -2.39 -0.01 4.59 16 41 H 0.09 3.34 6.34 -2.39 -0.02 3.32 16 Total: -1.00 -69.53 333.60 -2.62 -72.15 By element: Atomic # 1 Polarization: 45.85 SS G_CDS: -0.92 Total: 44.94 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 4.19 Total: 18.69 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -1.30 Total: -69.54 kcal Atomic # 8 Polarization: -99.38 SS G_CDS: -6.59 Total: -105.97 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.00 Total: 39.73 kcal Total: -69.53 -2.62 -72.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.865 kcal (2) G-P(sol) polarization free energy of solvation -69.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds