Wall clock time and date at job start Fri Apr 10 2020 17:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.46953 * 2 1 4 4 N 1.32178 * 120.53315 * 264.00120 * 3 2 1 5 5 C 1.31845 * 120.96080 * 180.02562 * 4 3 2 6 6 N 1.31872 * 122.07310 * 359.70970 * 5 4 3 7 7 C 1.32148 * 120.95502 * 0.58486 * 6 5 4 8 8 C 1.39841 * 120.53378 * 84.02122 * 3 2 1 9 9 C 1.48107 * 120.92580 * 0.02562 * 8 3 2 10 10 O 1.21857 * 120.00561 * 354.20724 * 9 8 3 11 11 N 1.33714 * 119.99911 * 174.21471 * 9 8 3 12 12 C 1.33048 * 120.00088 * 179.97438 * 11 9 8 13 13 C 1.41099 * 126.37550 * 0.02562 * 12 11 9 14 14 C 1.35061 * 108.24214 * 180.02562 * 13 12 11 15 15 N 1.36380 * 108.93181 * 0.02562 * 14 13 12 16 16 C 1.46504 * 125.85808 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.47123 * 85.02128 * 16 15 14 18 18 H 1.07998 * 120.00278 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99776 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46757 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47277 * 119.99738 * 21 19 17 24 24 H 1.48496 * 109.47450 * 240.00326 * 21 19 17 25 25 N 1.37403 * 126.37079 * 179.71423 * 12 11 9 26 26 H 0.96998 * 126.35769 * 359.95892 * 25 12 11 27 27 H 1.09005 * 109.46995 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47505 * 299.99995 * 1 2 3 29 29 H 1.09001 * 109.47755 * 60.00254 * 1 2 3 30 30 H 1.08995 * 109.47085 * 240.00133 * 2 1 3 31 31 H 1.08992 * 109.47231 * 120.00044 * 2 1 3 32 32 H 1.08000 * 118.96242 * 179.97438 * 5 4 3 33 33 H 1.08004 * 120.53427 * 179.70945 * 7 6 5 34 34 H 1.07998 * 125.87967 * 359.97438 * 13 12 11 35 35 H 1.08000 * 125.53467 * 180.02562 * 14 13 12 36 36 H 1.09004 * 109.47052 * 205.02745 * 16 15 14 37 37 H 1.09005 * 109.46278 * 325.02424 * 16 15 14 38 38 H 0.96999 * 120.00120 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.3682 2.0143 -1.1323 5 6 2.8091 3.2568 -1.1420 6 7 2.9309 3.9653 -0.0364 7 6 2.6229 3.4479 1.1399 8 6 2.1507 2.1325 1.1979 9 6 1.7876 1.5103 2.4920 10 8 1.2804 0.4025 2.5145 11 7 2.0163 2.1642 3.6357 12 6 1.6896 1.6056 4.7982 13 6 1.0993 0.3370 4.9805 14 6 0.9261 0.1377 6.3050 15 7 1.3825 1.2310 6.9804 16 6 1.3729 1.4070 8.4348 17 6 2.6041 0.7702 9.0260 18 1 3.3222 0.2834 8.3828 19 6 2.8138 0.8090 10.3882 20 7 1.9391 1.4013 11.1716 21 14 4.3403 0.0203 11.1211 22 1 5.1599 -0.5750 10.0350 23 1 5.1370 1.0514 11.8332 24 1 3.9381 -1.0422 12.0774 25 7 1.8698 2.1541 6.0450 26 1 2.2594 3.0205 6.2412 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.0749 3.7100 -2.0856 33 1 2.7296 4.0328 2.0415 34 1 0.8314 -0.3550 4.1958 35 1 0.4960 -0.7444 6.7560 36 1 1.3645 2.4709 8.6720 37 1 0.4835 0.9346 8.8520 38 1 2.0865 1.4282 12.1300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609789777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:25 Heat of formation + Delta-G solvation = 110.811028 kcal Electronic energy + Delta-G solvation = -23232.349500 eV Core-core repulsion = 19691.836412 eV Total energy + Delta-G solvation = -3540.513088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.15254 -40.86216 -38.44686 -35.07811 -34.26900 -33.05320 -32.72868 -31.28633 -31.16595 -30.33975 -26.99592 -25.29988 -24.76833 -23.33004 -22.06737 -21.58274 -21.43464 -19.65760 -17.70897 -17.19756 -16.88440 -16.69544 -15.88166 -15.35714 -15.18739 -15.02062 -14.76016 -14.29871 -13.88683 -13.77148 -13.60181 -13.39495 -13.17362 -12.87260 -12.63754 -12.37104 -12.11125 -11.50989 -11.44800 -11.36819 -11.14707 -10.87299 -10.61358 -10.50490 -10.41794 -9.68979 -9.56725 -9.39428 -9.19216 -9.13574 -9.00658 -8.47646 -7.13479 -6.59470 -4.74927 0.60637 1.16251 1.61956 1.90457 2.88240 2.99237 3.09345 3.13636 3.73434 3.93647 4.01930 4.11124 4.23900 4.44225 4.58412 4.63773 4.73509 5.08326 5.10286 5.32215 5.44392 5.53707 5.67068 5.69892 5.81559 5.92088 6.08596 6.26036 6.33755 6.37507 6.39908 6.43976 6.50777 6.61572 7.02772 7.27245 7.32558 7.41109 7.45443 7.77739 8.07882 8.11671 8.33944 8.96535 9.10575 10.44075 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.026804 B = 0.002895 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.376355 B = 9669.550437 C =10074.487135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C 0.218 3.782 4 N -0.532 5.532 5 C 0.299 3.701 6 N -0.538 5.538 7 C 0.198 3.802 8 C -0.200 4.200 9 C 0.542 3.458 10 O -0.566 6.566 11 N -0.696 5.696 12 C 0.471 3.529 13 C -0.331 4.331 14 C 0.165 3.835 15 N -0.336 5.336 16 C 0.252 3.748 17 C -0.560 4.560 18 H 0.071 0.929 19 C 0.071 3.929 20 N -0.885 5.885 21 Si 0.910 3.090 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.278 1.278 25 N -0.463 5.463 26 H 0.447 0.553 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.194 0.806 33 H 0.181 0.819 34 H 0.186 0.814 35 H 0.190 0.810 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 0.079 -12.964 13.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.116 4.116 3 C 0.072 3.928 4 N -0.246 5.246 5 C 0.011 3.989 6 N -0.252 5.252 7 C 0.032 3.968 8 C -0.208 4.208 9 C 0.327 3.673 10 O -0.448 6.448 11 N -0.460 5.460 12 C 0.221 3.779 13 C -0.363 4.363 14 C 0.018 3.982 15 N -0.120 5.120 16 C 0.136 3.864 17 C -0.599 4.599 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.522 5.522 21 Si 0.736 3.264 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.203 1.203 25 N -0.185 5.185 26 H 0.294 0.706 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.210 0.790 33 H 0.198 0.802 34 H 0.203 0.797 35 H 0.207 0.793 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.806 0.915 -13.331 13.484 hybrid contribution 0.636 -0.679 1.458 1.730 sum -1.170 0.236 -11.873 11.933 Atomic orbital electron populations 1.21531 0.93539 1.02069 1.01588 1.20769 0.97208 0.89286 1.04384 1.22007 0.87299 0.96670 0.86854 1.68320 1.14181 1.12189 1.29904 1.25028 0.89953 0.86746 0.97145 1.68471 1.18598 1.38756 0.99413 1.23670 0.85739 0.91560 0.95851 1.21499 1.05962 0.97412 0.95886 1.18311 0.78471 0.83976 0.86571 1.90562 1.43734 1.21861 1.88669 1.68666 1.42894 1.39381 0.95056 1.19058 0.85851 0.88227 0.84719 1.22466 1.16922 1.00721 0.96184 1.22918 0.92800 0.89801 0.92667 1.48162 1.50125 1.09502 1.04232 1.20144 1.00128 1.00213 0.65922 1.21423 1.06805 1.38884 0.92738 0.91107 1.24957 0.97369 0.94601 0.96531 1.69899 1.35208 1.41608 1.05460 0.86231 0.81738 0.79165 0.79238 1.19359 1.20459 1.20331 1.44628 1.57429 1.16190 1.00220 0.70598 0.92015 0.91669 0.93749 0.90987 0.86940 0.78992 0.80182 0.79720 0.79320 0.92906 0.91158 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.51 37.15 0.35 -1.29 16 2 C -0.08 -1.07 5.49 -27.89 -0.15 -1.23 16 3 C 0.22 3.29 6.12 -81.84 -0.50 2.79 16 4 N -0.53 -7.58 10.36 -10.50 -0.11 -7.69 16 5 C 0.30 3.81 12.27 -92.04 -1.13 2.68 16 6 N -0.54 -7.57 10.42 -14.27 -0.15 -7.72 16 7 C 0.20 2.91 10.87 -16.80 -0.18 2.73 16 8 C -0.20 -3.20 5.91 -104.63 -0.62 -3.82 16 9 C 0.54 9.56 7.64 -12.68 -0.10 9.46 16 10 O -0.57 -10.21 8.97 5.05 0.05 -10.16 16 11 N -0.70 -12.32 9.79 -12.18 -0.12 -12.44 16 12 C 0.47 8.19 8.07 -155.25 -1.25 6.94 16 13 C -0.33 -5.46 9.52 -39.63 -0.38 -5.83 16 14 C 0.16 2.49 11.45 -16.66 -0.19 2.30 16 15 N -0.34 -5.70 3.63 -62.23 -0.23 -5.92 16 16 C 0.25 4.92 6.19 -5.20 -0.03 4.89 16 17 C -0.56 -12.72 9.39 -34.44 -0.32 -13.04 16 18 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 19 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -21.77 13.29 55.43 0.74 -21.03 16 21 Si 0.91 18.67 29.54 -169.99 -5.02 13.65 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 N -0.46 -7.50 7.38 31.33 0.23 -7.27 16 26 H 0.45 6.33 8.96 -182.55 -1.64 4.69 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.95 6.91 -51.93 -0.36 0.59 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.11 1.69 5.92 -51.93 -0.31 1.38 16 32 H 0.19 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.18 2.47 7.66 -52.48 -0.40 2.06 16 34 H 0.19 3.12 5.77 -52.49 -0.30 2.81 16 35 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -27.18 330.76 -9.74 -36.92 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.51 Total: 8.53 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -4.60 Total: 8.15 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.36 Total: -62.07 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.05 Total: -10.16 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.18 -9.74 -36.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609789777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.728 kcal (2) G-P(sol) polarization free energy of solvation -27.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds