Wall clock time and date at job start Fri Apr 10 2020 17:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00251 * 2 1 4 4 O 1.20819 * 120.00179 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00094 * 179.97438 * 3 2 1 6 6 N 1.46494 * 109.47311 * 179.97438 * 5 3 2 7 7 C 1.37095 * 120.00167 * 264.08642 * 6 5 3 8 8 H 1.08003 * 119.99819 * 196.60460 * 7 6 5 9 9 C 1.38944 * 120.00173 * 16.60721 * 7 6 5 10 10 N 1.31412 * 119.99781 * 20.78713 * 9 7 6 11 11 Si 1.86800 * 120.00489 * 200.78558 * 9 7 6 12 12 H 1.48502 * 109.46917 * 59.99778 * 11 9 7 13 13 H 1.48491 * 109.47373 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47067 * 300.00310 * 11 9 7 15 15 C 1.34779 * 119.99806 * 84.08980 * 6 5 3 16 16 O 1.21293 * 120.00059 * 359.97438 * 15 6 5 17 17 C 1.50700 * 119.99843 * 179.97438 * 15 6 5 18 18 O 1.42904 * 109.47159 * 179.97438 * 17 15 6 19 19 C 1.42894 * 114.00239 * 180.02562 * 18 17 15 20 20 C 1.52999 * 109.47098 * 180.02562 * 19 18 17 21 21 H 1.09005 * 109.87191 * 53.99844 * 20 19 18 22 22 C 1.54100 * 109.87982 * 174.99818 * 20 19 18 23 23 C 1.54806 * 104.18896 * 121.45433 * 22 20 19 24 24 C 1.54995 * 102.09368 * 20.88115 * 23 22 20 25 25 O 1.43741 * 109.88221 * 292.83019 * 20 19 18 26 26 H 1.09001 * 109.47570 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46839 * 300.00049 * 1 2 3 28 28 H 1.09005 * 109.46994 * 59.99827 * 1 2 3 29 29 H 1.09006 * 109.46869 * 60.00144 * 5 3 2 30 30 H 1.09004 * 109.47236 * 300.00815 * 5 3 2 31 31 H 0.97003 * 120.00148 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.47116 * 60.00742 * 17 15 6 33 33 H 1.08997 * 109.47280 * 299.99881 * 17 15 6 34 34 H 1.09005 * 109.46969 * 299.99808 * 19 18 17 35 35 H 1.09000 * 109.47118 * 60.00141 * 19 18 17 36 36 H 1.09001 * 110.49155 * 240.13224 * 22 20 19 37 37 H 1.08999 * 110.49026 * 2.77824 * 22 20 19 38 38 H 1.08998 * 110.90623 * 139.08032 * 23 22 20 39 39 H 1.09002 * 110.90676 * 262.64897 * 23 22 20 40 40 H 1.09002 * 110.61527 * 81.47607 * 24 23 22 41 41 H 1.08999 * 110.62045 * 204.47610 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9818 2.6795 -0.0002 7 6 4.2940 3.3014 -1.1814 8 1 4.8475 4.2288 -1.1735 9 6 3.8982 2.7388 -2.3886 10 7 2.9097 1.8733 -2.4173 11 14 4.7711 3.2125 -3.9707 12 1 6.2103 2.8616 -3.8661 13 1 4.1637 2.4788 -5.1099 14 1 4.6329 4.6742 -4.1937 15 6 4.0571 3.3605 1.1605 16 8 3.7805 2.8104 2.2055 17 6 4.4850 4.8055 1.1598 18 8 4.4858 5.3027 2.4995 19 6 4.8785 6.6721 2.6111 20 6 4.8437 7.0945 4.0812 21 1 5.4458 6.4093 4.6780 22 6 5.3846 8.5301 4.2269 23 6 4.2164 9.3118 4.8754 24 6 3.3792 8.1743 5.5137 25 8 3.4871 7.0988 4.5566 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.9564 0.7804 -0.8892 30 1 3.9557 0.7806 0.8908 31 1 2.6331 1.4808 -3.2601 32 1 3.7904 5.3899 0.5563 33 1 5.4880 4.8872 0.7410 34 1 5.8898 6.7929 2.2226 35 1 4.1921 7.2948 2.0374 36 1 6.2599 8.5439 4.8764 37 1 5.6270 8.9475 3.2496 38 1 4.5839 9.9991 5.6374 39 1 3.6381 9.8443 4.1202 40 1 3.8030 7.8780 6.4733 41 1 2.3399 8.4815 5.6303 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609992328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:35 Heat of formation + Delta-G solvation = -217.583065 kcal Electronic energy + Delta-G solvation = -25304.905688 eV Core-core repulsion = 21378.257942 eV Total energy + Delta-G solvation = -3926.647747 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38854 -40.56802 -40.15233 -38.30691 -37.21418 -36.54452 -33.54359 -33.16366 -31.89221 -30.76840 -28.70916 -27.63315 -26.44962 -25.70946 -22.98123 -22.29755 -21.92271 -21.14774 -19.11968 -18.53156 -18.43587 -17.68708 -17.40993 -17.16995 -16.98099 -16.81984 -16.65373 -16.17143 -16.04537 -15.83306 -14.95663 -14.85799 -14.50643 -14.28276 -14.11176 -13.93096 -13.38899 -13.11764 -13.03746 -12.88608 -12.75506 -12.55933 -12.52262 -12.40417 -12.24440 -12.10944 -12.05512 -11.59922 -11.55484 -11.54043 -10.96102 -10.64919 -10.64639 -10.47616 -9.93655 -8.40100 -5.97691 1.41213 1.51622 1.61802 1.65288 1.75305 2.11184 2.29352 2.43069 2.95352 3.07755 3.21361 3.63382 3.92126 3.97266 4.08808 4.19038 4.22987 4.27575 4.30075 4.33650 4.39734 4.42978 4.48343 4.49486 4.52852 4.65047 4.67709 4.72551 4.81354 4.90608 4.96607 5.08091 5.20978 5.38150 5.58118 5.67401 5.97921 6.17749 6.34130 7.03349 7.18207 7.41464 7.82588 8.67297 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.003972 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.735796 B = 7047.312458 C = 8365.975446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.485 3.515 4 O -0.539 6.539 5 C 0.155 3.845 6 N -0.435 5.435 7 C -0.363 4.363 8 H 0.120 0.880 9 C -0.002 4.002 10 N -0.896 5.896 11 Si 1.002 2.998 12 H -0.259 1.259 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.453 3.547 16 O -0.623 6.623 17 C 0.078 3.922 18 O -0.394 6.394 19 C 0.053 3.947 20 C 0.072 3.928 21 H 0.066 0.934 22 C -0.140 4.140 23 C -0.147 4.147 24 C 0.030 3.970 25 O -0.406 6.406 26 H 0.136 0.864 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.274 0.726 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.320 9.604 5.604 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.292 6.292 3 C 0.328 3.672 4 O -0.428 6.428 5 C 0.029 3.971 6 N -0.155 5.155 7 C -0.489 4.489 8 H 0.138 0.862 9 C -0.205 4.205 10 N -0.534 5.534 11 Si 0.825 3.175 12 H -0.183 1.183 13 H -0.213 1.213 14 H -0.192 1.192 15 C 0.243 3.757 16 O -0.510 6.510 17 C -0.001 4.001 18 O -0.313 6.313 19 C -0.023 4.023 20 C 0.014 3.986 21 H 0.084 0.916 22 C -0.177 4.177 23 C -0.184 4.184 24 C -0.046 4.046 25 O -0.326 6.326 26 H 0.154 0.846 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.146 0.854 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.634 9.257 6.059 11.995 hybrid contribution -0.326 0.163 -1.052 1.114 sum 4.308 9.421 5.007 11.505 Atomic orbital electron populations 1.23309 0.76166 1.04956 1.01159 1.86417 1.24147 1.33640 1.84997 1.24113 0.92705 0.80817 0.69517 1.90484 1.67399 1.37800 1.47070 1.20565 0.87064 0.85503 1.03974 1.43583 1.57173 1.08496 1.06273 1.20090 1.35658 1.10813 0.82316 0.86202 1.26193 0.94844 0.96699 1.02722 1.69956 1.23740 1.30835 1.28842 0.84862 0.78606 0.78490 0.75586 1.18328 1.21285 1.19180 1.20623 0.82305 0.89232 0.83540 1.90519 1.56110 1.71098 1.33226 1.21887 1.02230 0.91626 0.84384 1.87993 1.89874 1.27446 1.26030 1.23063 1.00563 0.81885 0.96800 1.22923 0.83923 0.98438 0.93305 0.91607 1.22943 0.99585 0.91448 1.03745 1.23135 0.96273 0.97826 1.01202 1.23842 1.02101 0.86237 0.92443 1.89030 1.29126 1.54466 1.60022 0.84566 0.93334 0.93492 0.85423 0.89300 0.91598 0.90974 0.88453 0.89154 0.92635 0.88048 0.88755 0.87424 0.90373 0.91326 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.56 113.37 1.20 2.53 16 2 O -0.38 -16.80 10.56 -51.33 -0.54 -17.34 16 3 C 0.49 25.51 6.13 71.24 0.44 25.95 16 4 O -0.54 -32.06 15.79 21.99 0.35 -31.71 16 5 C 0.15 7.79 5.14 85.63 0.44 8.23 16 6 N -0.44 -22.78 2.18 -639.60 -1.39 -24.18 16 7 C -0.36 -17.94 9.15 84.04 0.77 -17.17 16 8 H 0.12 5.33 6.55 -2.91 -0.02 5.31 16 9 C 0.00 -0.11 4.90 84.92 0.42 0.30 16 10 N -0.90 -46.40 9.24 21.66 0.20 -46.20 16 11 Si 1.00 37.68 29.60 68.60 2.03 39.71 16 12 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 13 H -0.29 -10.92 7.11 99.48 0.71 -10.21 16 14 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 15 C 0.45 24.09 7.50 87.66 0.66 24.74 16 16 O -0.62 -37.29 16.18 15.97 0.26 -37.03 16 17 C 0.08 3.36 4.86 71.24 0.35 3.70 16 18 O -0.39 -17.10 9.87 -126.82 -1.25 -18.35 16 19 C 0.05 1.62 5.39 71.98 0.39 2.00 16 20 C 0.07 1.97 3.71 30.97 0.11 2.08 16 21 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 22 C -0.14 -2.31 6.64 31.58 0.21 -2.10 16 23 C -0.15 -2.23 7.15 31.89 0.23 -2.00 16 24 C 0.03 0.64 7.72 72.66 0.56 1.20 16 25 O -0.41 -13.53 11.18 -147.43 -1.65 -15.17 16 26 H 0.14 3.42 8.14 -2.39 -0.02 3.40 16 27 H 0.05 1.74 8.13 -2.38 -0.02 1.72 16 28 H 0.05 1.74 8.13 -2.38 -0.02 1.72 16 29 H 0.13 6.25 6.34 -2.38 -0.02 6.23 16 30 H 0.09 4.26 7.61 -2.39 -0.02 4.24 16 31 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 32 H 0.07 3.08 8.10 -2.39 -0.02 3.07 16 33 H 0.10 3.52 7.70 -2.39 -0.02 3.50 16 34 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.31 7.70 -2.39 -0.02 1.29 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -77.99 346.61 4.79 -73.19 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 1.03 Total: 27.61 kcal Atomic # 6 Polarization: 43.72 SS G_CDS: 5.76 Total: 49.48 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -1.19 Total: -70.38 kcal Atomic # 8 Polarization: -116.78 SS G_CDS: -2.84 Total: -119.61 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -77.99 4.79 -73.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609992328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.389 kcal (2) G-P(sol) polarization free energy of solvation -77.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds