Wall clock time and date at job start Fri Apr 10 2020 17:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47025 * 2 1 4 4 O 1.42899 * 109.47031 * 119.99913 * 2 1 3 5 5 C 1.42905 * 113.99778 * 269.99750 * 4 2 1 6 6 C 1.52999 * 109.46728 * 179.97438 * 5 4 2 7 7 H 1.08997 * 110.27944 * 54.30579 * 6 5 4 8 8 C 1.54952 * 110.30528 * 176.39087 * 6 5 4 9 9 C 1.55415 * 100.89009 * 155.28987 * 8 6 5 10 10 C 1.54381 * 102.31233 * 325.98821 * 9 8 6 11 11 O 1.43242 * 107.58588 * 21.29093 * 10 9 8 12 12 C 1.50701 * 109.47303 * 239.99682 * 2 1 3 13 13 O 1.20826 * 120.00158 * 245.00367 * 12 2 1 14 14 O 1.34234 * 119.99590 * 65.00041 * 12 2 1 15 15 C 1.45208 * 116.99646 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.46706 * 179.97438 * 15 14 12 17 17 O 1.21292 * 120.00418 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99666 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00109 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99629 * 0.02562 * 19 18 16 21 21 C 1.38944 * 120.00124 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00252 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00113 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47091 * 89.99973 * 23 21 19 25 25 H 1.48494 * 109.47241 * 209.99908 * 23 21 19 26 26 H 1.48497 * 109.46793 * 329.99813 * 23 21 19 27 27 H 1.09003 * 109.47460 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47597 * 300.00067 * 1 2 3 29 29 H 1.09001 * 109.47120 * 60.00519 * 1 2 3 30 30 H 1.09000 * 109.47187 * 300.00233 * 5 4 2 31 31 H 1.09001 * 109.46558 * 60.00281 * 5 4 2 32 32 H 1.08999 * 111.12411 * 273.27789 * 8 6 5 33 33 H 1.08995 * 111.12322 * 37.44474 * 8 6 5 34 34 H 1.09003 * 110.88422 * 207.75421 * 9 8 6 35 35 H 1.08998 * 110.93694 * 84.25447 * 9 8 6 36 36 H 1.08993 * 109.83566 * 261.77412 * 10 9 8 37 37 H 1.09000 * 109.90504 * 140.83714 * 10 9 8 38 38 H 1.08997 * 109.47108 * 299.99642 * 15 14 12 39 39 H 1.09004 * 109.46978 * 60.00141 * 15 14 12 40 40 H 0.97001 * 120.00042 * 359.97438 * 18 16 15 41 41 H 0.96998 * 120.00685 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7078 -0.6407 3.4792 7 1 3.6003 -1.1988 3.1965 8 6 3.0110 0.2832 4.6856 9 6 2.8593 -0.7162 5.8662 10 6 1.7354 -1.6488 5.3657 11 8 1.6838 -1.5372 3.9386 12 6 2.0323 -0.7105 -1.2304 13 8 2.6506 -1.7429 -1.1218 14 8 1.7929 -0.1963 -2.4470 15 6 2.3060 -0.9345 -3.5873 16 6 1.9427 -0.2114 -4.8585 17 8 1.3128 0.8239 -4.8086 18 7 2.3177 -0.7152 -6.0511 19 6 1.9876 -0.0571 -7.2076 20 1 1.4275 0.8652 -7.1630 21 6 2.3737 -0.5768 -8.4370 22 7 3.0558 -1.6987 -8.4912 23 14 1.9234 0.3195 -10.0129 24 1 3.0004 1.2809 -10.3607 25 1 1.7637 -0.6643 -11.1136 26 1 0.6480 1.0545 -9.8171 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.9319 0.9514 2.0449 31 1 1.2537 0.6547 2.5588 32 1 4.0251 0.6792 4.6321 33 1 2.2799 1.0884 4.7572 34 1 2.5574 -0.1989 6.7769 35 1 3.7827 -1.2728 6.0263 36 1 0.7817 -1.3422 5.7953 37 1 1.9542 -2.6785 5.6483 38 1 3.3905 -1.0133 -3.5109 39 1 1.8691 -1.9331 -3.6001 40 1 2.8217 -1.5430 -6.0910 41 1 3.3250 -2.0617 -9.3495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731243993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:05 Heat of formation + Delta-G solvation = -214.111007 kcal Electronic energy + Delta-G solvation = -23982.849265 eV Core-core repulsion = 20056.352078 eV Total energy + Delta-G solvation = -3926.497187 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45121 -39.82319 -38.35910 -37.72797 -35.94312 -33.99313 -32.66866 -32.25172 -31.36693 -30.42806 -28.34265 -25.98569 -24.95754 -24.02466 -22.09399 -21.65063 -20.72059 -19.56430 -18.07606 -17.76805 -17.49412 -16.95841 -16.46670 -16.19944 -15.96907 -15.62992 -15.30115 -14.90010 -14.55454 -14.14507 -14.05485 -13.74461 -13.64274 -13.16920 -12.75957 -12.60471 -12.37049 -12.22126 -12.14195 -11.99587 -11.72067 -11.63023 -11.61301 -11.41531 -11.19732 -11.12675 -10.43647 -10.38239 -10.33105 -10.27030 -9.84342 -9.80156 -9.59815 -8.51342 -8.07525 -6.49002 -3.91153 2.31734 2.35251 3.13926 3.23901 3.29554 3.40511 3.57356 3.74750 4.02416 4.11986 4.40487 4.48585 4.57108 4.71342 4.73799 4.79014 4.84366 4.95782 5.06367 5.08986 5.12509 5.16190 5.24462 5.34167 5.42603 5.49712 5.51168 5.59017 5.62541 5.71592 5.72013 6.03907 6.07055 6.62976 6.67434 6.84190 7.48565 7.88653 7.98931 8.49438 9.07829 9.40292 9.90125 10.68196 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.051597 B = 0.002128 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.541482 B =13153.528841 C =13338.723162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 H 0.099 0.901 4 O -0.352 6.352 5 C 0.061 3.939 6 C 0.084 3.916 7 H 0.082 0.918 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.369 6.369 12 C 0.457 3.543 13 O -0.493 6.493 14 O -0.324 6.324 15 C 0.061 3.939 16 C 0.439 3.561 17 O -0.576 6.576 18 N -0.553 5.553 19 C -0.302 4.302 20 H 0.106 0.894 21 C 0.024 3.976 22 N -0.897 5.897 23 Si 0.935 3.065 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.268 1.268 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.395 0.605 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 2.634 26.193 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.042 3.958 3 H 0.117 0.883 4 O -0.270 6.270 5 C -0.015 4.015 6 C 0.026 3.974 7 H 0.100 0.900 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.029 4.029 11 O -0.288 6.288 12 C 0.298 3.702 13 O -0.379 6.379 14 O -0.239 6.239 15 C -0.016 4.016 16 C 0.224 3.776 17 O -0.461 6.461 18 N -0.190 5.190 19 C -0.431 4.431 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.537 5.537 23 Si 0.761 3.239 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.229 0.771 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.322 2.592 25.923 26.054 hybrid contribution 0.420 -0.006 -0.692 0.810 sum 0.098 2.586 25.231 25.363 Atomic orbital electron populations 1.22213 0.92253 1.04195 1.03960 1.21341 0.95808 0.95788 0.82826 0.88296 1.88070 1.86651 1.33885 1.18440 1.22810 1.00576 0.92550 0.85583 1.22982 0.91641 0.90299 0.92456 0.90003 1.23270 1.03434 0.98404 0.93617 1.23130 0.99783 0.97468 0.98897 1.23144 0.98527 0.99556 0.81713 1.88552 1.54305 1.65880 1.20063 1.23368 0.77477 0.84179 0.85191 1.90671 1.36981 1.23117 1.87151 1.86515 1.71616 1.51886 1.13849 1.22770 0.99894 0.95412 0.83559 1.19305 0.86540 0.87879 0.83886 1.90556 1.43991 1.24976 1.86533 1.41706 1.49057 1.24169 1.04058 1.19723 1.33556 1.07535 0.82325 0.87603 1.25320 0.96545 0.96287 0.99661 1.69613 1.37538 1.19403 1.27180 0.85789 0.79168 0.78723 0.80210 1.20282 1.20820 1.19285 0.91013 0.90952 0.89515 0.91502 0.91995 0.89356 0.89941 0.89838 0.90317 0.91321 0.91344 0.89489 0.89441 0.77128 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.50 37.16 0.35 -1.56 16 2 C 0.10 1.32 3.24 -27.88 -0.09 1.23 16 3 H 0.10 1.02 7.79 -51.93 -0.40 0.62 16 4 O -0.35 -4.80 9.52 -57.83 -0.55 -5.35 16 5 C 0.06 0.58 5.45 37.16 0.20 0.78 16 6 C 0.08 0.77 3.72 -25.70 -0.10 0.67 16 7 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 8 C -0.15 -0.85 6.58 -24.42 -0.16 -1.01 16 9 C -0.16 -0.81 7.02 -24.73 -0.17 -0.98 16 10 C 0.05 0.35 7.80 37.88 0.30 0.65 16 11 O -0.37 -4.15 11.04 -35.96 -0.40 -4.55 16 12 C 0.46 7.79 7.29 36.01 0.26 8.06 16 13 O -0.49 -9.66 16.26 -25.46 -0.41 -10.07 16 14 O -0.32 -6.15 9.75 -45.91 -0.45 -6.60 16 15 C 0.06 1.20 5.94 36.01 0.21 1.41 16 16 C 0.44 10.68 7.86 -10.99 -0.09 10.60 16 17 O -0.58 -16.03 16.08 -14.11 -0.23 -16.26 16 18 N -0.55 -14.09 5.29 -10.97 -0.06 -14.15 16 19 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16 20 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 22 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 23 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.40 8.06 -51.93 -0.42 -0.01 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 1.56 8.13 -51.93 -0.42 1.13 16 39 H 0.09 1.58 8.13 -51.93 -0.42 1.16 16 40 H 0.40 9.57 7.90 -40.82 -0.32 9.25 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -34.65 355.88 -6.67 -41.32 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.12 Total: 6.15 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 0.48 Total: 11.88 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.67 Total: -37.61 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -2.04 Total: -42.84 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.65 -6.67 -41.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.788 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds