Wall clock time and date at job start Fri Apr 10 2020 17:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47025 * 2 1 4 4 O 1.42899 * 109.47031 * 119.99913 * 2 1 3 5 5 C 1.42905 * 113.99778 * 269.99750 * 4 2 1 6 6 C 1.52999 * 109.46728 * 179.97438 * 5 4 2 7 7 H 1.08997 * 110.27944 * 54.30579 * 6 5 4 8 8 C 1.54952 * 110.30528 * 176.39087 * 6 5 4 9 9 C 1.55415 * 100.89009 * 155.28987 * 8 6 5 10 10 C 1.54381 * 102.31233 * 325.98821 * 9 8 6 11 11 O 1.43242 * 107.58588 * 21.29093 * 10 9 8 12 12 C 1.50701 * 109.47303 * 239.99682 * 2 1 3 13 13 O 1.20826 * 120.00158 * 245.00367 * 12 2 1 14 14 O 1.34234 * 119.99590 * 65.00041 * 12 2 1 15 15 C 1.45208 * 116.99646 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.46706 * 179.97438 * 15 14 12 17 17 O 1.21292 * 120.00418 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99666 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00109 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99629 * 0.02562 * 19 18 16 21 21 C 1.38944 * 120.00124 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00252 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00113 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47091 * 89.99973 * 23 21 19 25 25 H 1.48494 * 109.47241 * 209.99908 * 23 21 19 26 26 H 1.48497 * 109.46793 * 329.99813 * 23 21 19 27 27 H 1.09003 * 109.47460 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47597 * 300.00067 * 1 2 3 29 29 H 1.09001 * 109.47120 * 60.00519 * 1 2 3 30 30 H 1.09000 * 109.47187 * 300.00233 * 5 4 2 31 31 H 1.09001 * 109.46558 * 60.00281 * 5 4 2 32 32 H 1.08999 * 111.12411 * 273.27789 * 8 6 5 33 33 H 1.08995 * 111.12322 * 37.44474 * 8 6 5 34 34 H 1.09003 * 110.88422 * 207.75421 * 9 8 6 35 35 H 1.08998 * 110.93694 * 84.25447 * 9 8 6 36 36 H 1.08993 * 109.83566 * 261.77412 * 10 9 8 37 37 H 1.09000 * 109.90504 * 140.83714 * 10 9 8 38 38 H 1.08997 * 109.47108 * 299.99642 * 15 14 12 39 39 H 1.09004 * 109.46978 * 60.00141 * 15 14 12 40 40 H 0.97001 * 120.00042 * 359.97438 * 18 16 15 41 41 H 0.96998 * 120.00685 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7078 -0.6407 3.4792 7 1 3.6003 -1.1988 3.1965 8 6 3.0110 0.2832 4.6856 9 6 2.8593 -0.7162 5.8662 10 6 1.7354 -1.6488 5.3657 11 8 1.6838 -1.5372 3.9386 12 6 2.0323 -0.7105 -1.2304 13 8 2.6506 -1.7429 -1.1218 14 8 1.7929 -0.1963 -2.4470 15 6 2.3060 -0.9345 -3.5873 16 6 1.9427 -0.2114 -4.8585 17 8 1.3128 0.8239 -4.8086 18 7 2.3177 -0.7152 -6.0511 19 6 1.9876 -0.0571 -7.2076 20 1 1.4275 0.8652 -7.1630 21 6 2.3737 -0.5768 -8.4370 22 7 3.0558 -1.6987 -8.4912 23 14 1.9234 0.3195 -10.0129 24 1 3.0004 1.2809 -10.3607 25 1 1.7637 -0.6643 -11.1136 26 1 0.6480 1.0545 -9.8171 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.9319 0.9514 2.0449 31 1 1.2537 0.6547 2.5588 32 1 4.0251 0.6792 4.6321 33 1 2.2799 1.0884 4.7572 34 1 2.5574 -0.1989 6.7769 35 1 3.7827 -1.2728 6.0263 36 1 0.7817 -1.3422 5.7953 37 1 1.9542 -2.6785 5.6483 38 1 3.3905 -1.0133 -3.5109 39 1 1.8691 -1.9331 -3.6001 40 1 2.8217 -1.5430 -6.0910 41 1 3.3250 -2.0617 -9.3495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731243993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:04 Heat of formation + Delta-G solvation = -237.629844 kcal Electronic energy + Delta-G solvation = -23983.869118 eV Core-core repulsion = 20056.352078 eV Total energy + Delta-G solvation = -3927.517040 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.81962 -40.53359 -40.08790 -38.88935 -37.42966 -36.04223 -33.48475 -33.35243 -32.96577 -31.17849 -29.98789 -26.88989 -26.53007 -25.28195 -22.61650 -22.31010 -21.95355 -21.44444 -20.08846 -19.00556 -18.45591 -18.05556 -17.77953 -17.42406 -17.16127 -16.79562 -16.48474 -16.22043 -15.90472 -15.67607 -15.46701 -14.91430 -14.57368 -14.23926 -14.04089 -13.80670 -13.56780 -13.46045 -13.31814 -13.10995 -12.93763 -12.65663 -12.57919 -12.47902 -12.19315 -12.12008 -12.11153 -11.91480 -11.68591 -11.58276 -11.49922 -10.79770 -10.52308 -10.47881 -10.12864 -8.52728 -6.03695 0.98977 1.07250 1.35926 1.43560 1.56874 1.85516 2.26981 2.60103 2.86470 3.02495 3.12559 3.53638 3.56719 3.79334 3.86184 3.92625 3.98077 4.03005 4.12376 4.14861 4.19631 4.24378 4.37487 4.47710 4.57333 4.67677 4.73170 4.83029 4.90357 4.98074 5.01822 5.13943 5.22461 5.24922 5.36622 5.87431 5.92073 6.13936 6.44254 6.59710 7.01787 7.38467 7.91400 8.64266 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.051597 B = 0.002128 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.541482 B =13153.528841 C =13338.723162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 H 0.131 0.869 4 O -0.381 6.381 5 C 0.054 3.946 6 C 0.074 3.926 7 H 0.065 0.935 8 C -0.140 4.140 9 C -0.150 4.150 10 C 0.037 3.963 11 O -0.404 6.404 12 C 0.456 3.544 13 O -0.523 6.523 14 O -0.335 6.335 15 C 0.070 3.930 16 C 0.438 3.562 17 O -0.615 6.615 18 N -0.558 5.558 19 C -0.338 4.338 20 H 0.086 0.914 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 1.000 3.000 24 H -0.269 1.269 25 H -0.270 1.270 26 H -0.270 1.270 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.400 0.600 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 3.700 27.219 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.148 0.852 4 O -0.301 6.301 5 C -0.022 4.022 6 C 0.017 3.983 7 H 0.083 0.917 8 C -0.178 4.178 9 C -0.187 4.187 10 C -0.039 4.039 11 O -0.325 6.325 12 C 0.299 3.701 13 O -0.411 6.411 14 O -0.251 6.251 15 C -0.007 4.007 16 C 0.225 3.775 17 O -0.502 6.502 18 N -0.195 5.195 19 C -0.467 4.467 20 H 0.104 0.896 21 C -0.211 4.211 22 N -0.556 5.556 23 Si 0.823 3.177 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.195 1.195 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.234 0.766 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.153 3.639 26.974 27.219 hybrid contribution 0.385 -0.390 -0.927 1.076 sum 0.232 3.249 26.047 26.250 Atomic orbital electron populations 1.22199 0.90989 1.03685 1.05191 1.21505 0.96543 0.96337 0.80924 0.85202 1.88045 1.86882 1.35813 1.19350 1.23122 1.02139 0.92656 0.84273 1.23127 0.90642 0.90764 0.93768 0.91699 1.23273 1.04717 0.98029 0.91749 1.23140 0.99067 0.97018 0.99474 1.23344 1.00014 1.00270 0.80301 1.88510 1.55056 1.66740 1.22177 1.24316 0.76485 0.83930 0.85339 1.90651 1.38534 1.24598 1.87318 1.86523 1.71898 1.52202 1.14437 1.22549 1.01096 0.95127 0.81941 1.20007 0.85183 0.87370 0.84953 1.90520 1.45540 1.26785 1.87345 1.41749 1.49238 1.24285 1.04230 1.19738 1.35216 1.07870 0.83850 0.89591 1.26165 0.95805 0.96883 1.02258 1.69675 1.37420 1.20074 1.28395 0.84824 0.78827 0.77812 0.76246 1.19401 1.19497 1.19457 0.92408 0.88072 0.89860 0.89163 0.90479 0.87751 0.88698 0.87759 0.90014 0.90433 0.91522 0.87582 0.87815 0.76597 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.50 71.98 0.68 -2.78 16 2 C 0.11 2.60 3.24 29.85 0.10 2.69 16 3 H 0.13 2.35 7.79 -2.39 -0.02 2.33 16 4 O -0.38 -10.05 9.52 -127.37 -1.21 -11.26 16 5 C 0.05 0.91 5.45 71.98 0.39 1.31 16 6 C 0.07 1.28 3.72 31.26 0.12 1.40 16 7 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 8 C -0.14 -1.25 6.58 32.09 0.21 -1.04 16 9 C -0.15 -1.25 7.02 31.89 0.22 -1.02 16 10 C 0.04 0.51 7.80 72.45 0.56 1.08 16 11 O -0.40 -8.99 11.04 -148.29 -1.64 -10.62 16 12 C 0.46 15.34 7.29 71.24 0.52 15.86 16 13 O -0.52 -20.49 16.26 28.38 0.46 -20.03 16 14 O -0.34 -12.63 9.75 -45.10 -0.44 -13.07 16 15 C 0.07 2.73 5.94 71.24 0.42 3.15 16 16 C 0.44 21.61 7.86 87.66 0.69 22.30 16 17 O -0.62 -34.90 16.08 15.73 0.25 -34.65 16 18 N -0.56 -28.88 5.29 -306.99 -1.62 -30.50 16 19 C -0.34 -19.01 9.68 84.04 0.81 -18.20 16 20 H 0.09 5.10 7.16 -2.91 -0.02 5.08 16 21 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 22 N -0.92 -48.94 13.05 21.66 0.28 -48.66 16 23 Si 1.00 42.07 29.55 68.60 2.03 44.10 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 1.55 7.87 -2.39 -0.02 1.53 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 31 H 0.08 1.06 7.87 -2.39 -0.02 1.04 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.63 8.06 -2.39 -0.02 0.61 16 34 H 0.10 0.45 8.14 -2.39 -0.02 0.44 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.11 3.73 8.13 -2.39 -0.02 3.71 16 39 H 0.10 3.71 8.13 -2.38 -0.02 3.69 16 40 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 41 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -75.63 355.88 3.62 -72.01 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.31 Total: 28.01 kcal Atomic # 6 Polarization: 19.47 SS G_CDS: 5.20 Total: 24.67 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -1.34 Total: -79.16 kcal Atomic # 8 Polarization: -87.05 SS G_CDS: -2.58 Total: -89.63 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -75.63 3.62 -72.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.622 kcal (2) G-P(sol) polarization free energy of solvation -75.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds