Wall clock time and date at job start Fri Apr 10 2020 17:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47206 * 2 1 4 4 O 1.42902 * 109.46818 * 240.00453 * 2 1 3 5 5 C 1.42903 * 114.00089 * 90.00437 * 4 2 1 6 6 C 1.52994 * 109.47240 * 179.97438 * 5 4 2 7 7 H 1.09000 * 110.27451 * 304.35972 * 6 5 4 8 8 C 1.54947 * 110.39537 * 182.21220 * 6 5 4 9 9 C 1.55457 * 100.98961 * 204.64739 * 8 6 5 10 10 C 1.54382 * 102.18540 * 34.03935 * 9 8 6 11 11 O 1.43233 * 107.66464 * 338.74226 * 10 9 8 12 12 C 1.50694 * 109.47321 * 120.00318 * 2 1 3 13 13 O 1.20825 * 119.99887 * 119.99713 * 12 2 1 14 14 O 1.34233 * 119.99982 * 300.00386 * 12 2 1 15 15 C 1.45195 * 116.99667 * 179.97438 * 14 12 2 16 16 C 1.50711 * 109.46832 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99703 * 359.97438 * 16 15 14 18 18 N 1.34770 * 120.00086 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00222 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99528 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00010 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00358 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99885 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47219 * 59.99741 * 23 21 19 25 25 H 1.48496 * 109.47357 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47264 * 300.00394 * 23 21 19 27 27 H 1.09003 * 109.47021 * 59.99825 * 1 2 3 28 28 H 1.08999 * 109.47034 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47075 * 299.99895 * 1 2 3 30 30 H 1.09001 * 109.47292 * 59.99247 * 5 4 2 31 31 H 1.09009 * 109.46875 * 299.99565 * 5 4 2 32 32 H 1.08999 * 111.12360 * 322.51237 * 8 6 5 33 33 H 1.08993 * 111.12429 * 86.67654 * 8 6 5 34 34 H 1.08994 * 110.83103 * 275.89000 * 9 8 6 35 35 H 1.08999 * 110.92148 * 152.22878 * 9 8 6 36 36 H 1.09002 * 109.83024 * 219.18066 * 10 9 8 37 37 H 1.08996 * 109.83002 * 98.29659 * 10 9 8 38 38 H 1.08994 * 109.47292 * 299.99369 * 15 14 12 39 39 H 1.08996 * 109.47645 * 60.00143 * 15 14 12 40 40 H 0.97003 * 120.00353 * 0.02562 * 18 16 15 41 41 H 0.97004 * 120.00208 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2001 0.1831 -2.2941 6 6 2.7090 -0.6403 -3.4789 7 1 3.6152 -1.1794 -3.2027 8 6 2.9796 0.2774 -4.6977 9 6 2.8346 -0.7348 -5.8687 10 6 1.7346 -1.6832 -5.3454 11 8 1.6965 -1.5594 -3.9189 12 6 2.0324 -0.7104 1.2304 13 8 2.7270 -1.6928 1.1194 14 8 1.7081 -0.2519 2.4496 15 6 2.2268 -0.9866 3.5895 16 6 1.7629 -0.3294 4.8639 17 8 1.0642 0.6609 4.8160 18 7 2.1251 -0.8415 6.0567 19 6 1.7035 -0.2433 7.2161 20 1 1.0807 0.6380 7.1735 21 6 2.0766 -0.7716 8.4459 22 7 2.8340 -1.8443 8.4978 23 14 1.5016 0.0429 10.0255 24 1 0.0172 0.0430 10.0705 25 1 2.0326 -0.7080 11.1914 26 1 1.9981 1.4417 10.0704 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.9320 0.9515 -2.0450 31 1 1.2537 0.6549 -2.5589 32 1 2.2320 1.0674 -4.7682 33 1 3.9861 0.6937 -4.6602 34 1 3.7672 -1.2749 -6.0318 35 1 2.5118 -0.2318 -6.7802 36 1 1.9706 -2.7110 -5.6213 37 1 0.7704 -1.3994 -5.7670 38 1 1.8626 -2.0133 3.5563 39 1 3.3163 -0.9862 3.5568 40 1 2.6848 -1.6328 6.0951 41 1 3.0948 -2.2129 9.3563 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731243994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:09 Heat of formation + Delta-G solvation = -213.941665 kcal Electronic energy + Delta-G solvation = -23989.218423 eV Core-core repulsion = 20062.728579 eV Total energy + Delta-G solvation = -3926.489844 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.44993 -39.82098 -38.35499 -37.72462 -35.94285 -33.99021 -32.66409 -32.25360 -31.36452 -30.42685 -28.32725 -25.98183 -24.94704 -24.02692 -22.09152 -21.64768 -20.72529 -19.56132 -18.07170 -17.74889 -17.49239 -16.96890 -16.50000 -16.18549 -15.95509 -15.62706 -15.29567 -14.89382 -14.54876 -14.14998 -14.05680 -13.73249 -13.64296 -13.16788 -12.74525 -12.60078 -12.36409 -12.22067 -12.13548 -11.99019 -11.71807 -11.62611 -11.60854 -11.41208 -11.19557 -11.10318 -10.48230 -10.37906 -10.32984 -10.26661 -9.84049 -9.79468 -9.58564 -8.51046 -8.07276 -6.48684 -3.90908 2.29353 2.38246 3.16311 3.23518 3.27509 3.40531 3.57851 3.75120 4.02308 4.12173 4.40704 4.48600 4.56888 4.71318 4.73585 4.79422 4.84238 4.95557 5.06375 5.09203 5.12816 5.16411 5.24272 5.34118 5.42749 5.50504 5.51794 5.60177 5.63764 5.71712 5.72288 6.05592 6.08040 6.63221 6.67575 6.84739 7.48564 7.88694 7.98990 8.49699 9.07940 9.40488 9.90389 10.68419 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.052665 B = 0.002129 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.531080 B =13149.260367 C =13353.094425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 H 0.100 0.900 4 O -0.351 6.351 5 C 0.062 3.938 6 C 0.084 3.916 7 H 0.082 0.918 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.368 6.368 12 C 0.457 3.543 13 O -0.493 6.493 14 O -0.323 6.323 15 C 0.061 3.939 16 C 0.439 3.561 17 O -0.577 6.577 18 N -0.552 5.552 19 C -0.303 4.303 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.897 5.897 23 Si 0.935 3.065 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.272 1.272 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.395 0.605 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 3.066 -26.202 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.042 3.958 3 H 0.117 0.883 4 O -0.270 6.270 5 C -0.015 4.015 6 C 0.026 3.974 7 H 0.100 0.900 8 C -0.188 4.188 9 C -0.193 4.193 10 C -0.030 4.030 11 O -0.288 6.288 12 C 0.298 3.702 13 O -0.380 6.380 14 O -0.238 6.238 15 C -0.016 4.016 16 C 0.224 3.776 17 O -0.461 6.461 18 N -0.190 5.190 19 C -0.432 4.432 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.537 5.537 23 Si 0.762 3.238 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.198 1.198 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.229 0.771 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.313 3.005 -25.926 26.102 hybrid contribution 0.392 -0.007 0.685 0.789 sum 0.706 2.998 -25.241 25.429 Atomic orbital electron populations 1.22220 0.92266 1.04205 1.03951 1.21348 0.95846 0.95726 0.82837 0.88263 1.88069 1.86663 1.33859 1.18420 1.22802 1.00536 0.92542 0.85593 1.22984 0.91940 0.89921 0.92525 0.90025 1.23280 1.03487 0.98393 0.93592 1.23142 0.99930 0.97288 0.98903 1.23142 0.98686 0.99465 0.81674 1.88555 1.55488 1.64436 1.20279 1.23366 0.78194 0.83445 0.85200 1.90671 1.34817 1.25246 1.87236 1.86512 1.68980 1.54670 1.13662 1.22767 0.99601 0.95712 0.83556 1.19303 0.86795 0.87637 0.83885 1.90554 1.41449 1.27441 1.86622 1.41699 1.45728 1.27630 1.03906 1.19676 1.29939 1.11438 0.82152 0.87655 1.25318 0.96570 0.96227 0.99674 1.69609 1.35495 1.21358 1.27282 0.85847 0.79095 0.78983 0.79884 1.19756 1.20883 1.19777 0.91041 0.91033 0.89424 0.91533 0.92016 0.89949 0.89386 0.90314 0.89803 0.91366 0.91315 0.89443 0.89506 0.77125 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 9.46 37.16 0.35 -1.58 16 2 C 0.10 1.32 3.24 -27.88 -0.09 1.23 16 3 H 0.10 1.02 7.79 -51.93 -0.40 0.61 16 4 O -0.35 -4.80 9.51 -58.44 -0.56 -5.36 16 5 C 0.06 0.58 5.46 37.15 0.20 0.79 16 6 C 0.08 0.77 3.72 -25.71 -0.10 0.67 16 7 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 8 C -0.15 -0.85 6.58 -24.40 -0.16 -1.01 16 9 C -0.16 -0.81 7.03 -24.70 -0.17 -0.98 16 10 C 0.05 0.35 7.79 37.88 0.30 0.65 16 11 O -0.37 -4.17 11.03 -36.86 -0.41 -4.57 16 12 C 0.46 7.80 7.33 36.00 0.26 8.06 16 13 O -0.49 -9.66 16.25 -25.48 -0.41 -10.08 16 14 O -0.32 -6.15 9.66 -45.91 -0.44 -6.59 16 15 C 0.06 1.20 5.94 36.01 0.21 1.41 16 16 C 0.44 10.69 7.86 -10.98 -0.09 10.60 16 17 O -0.58 -16.03 16.08 -14.11 -0.23 -16.26 16 18 N -0.55 -14.09 5.29 -10.96 -0.06 -14.15 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 20 H 0.11 3.03 7.16 -52.48 -0.38 2.65 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 22 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 23 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.06 0.50 7.87 -51.92 -0.41 0.09 16 32 H 0.08 0.40 8.06 -51.93 -0.42 -0.01 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 1.58 8.13 -51.93 -0.42 1.16 16 39 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 40 H 0.40 9.58 7.90 -40.82 -0.32 9.25 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -34.63 355.75 -6.68 -41.31 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.12 Total: 6.20 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 0.48 Total: 11.85 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.67 Total: -37.62 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -2.05 Total: -42.85 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.63 -6.68 -41.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.635 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds