Wall clock time and date at job start Fri Apr 10 2020 17:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47315 * 2 1 4 4 O 1.42908 * 109.47073 * 119.99423 * 2 1 3 5 5 C 1.42898 * 113.99969 * 270.00584 * 4 2 1 6 6 C 1.53000 * 109.47161 * 179.97438 * 5 4 2 7 7 H 1.09002 * 110.27147 * 54.29321 * 6 5 4 8 8 C 1.54942 * 110.30941 * 176.38543 * 6 5 4 9 9 C 1.55418 * 100.89349 * 155.28776 * 8 6 5 10 10 C 1.54385 * 102.30856 * 325.99130 * 9 8 6 11 11 O 1.43241 * 107.58889 * 21.28164 * 10 9 8 12 12 C 1.50696 * 109.47550 * 239.99370 * 2 1 3 13 13 O 1.21292 * 119.99893 * 253.51901 * 12 2 1 14 14 N 1.34775 * 119.99909 * 73.50918 * 12 2 1 15 15 C 1.37096 * 119.99710 * 175.00181 * 14 12 2 16 16 H 1.07997 * 120.00611 * 342.86706 * 15 14 12 17 17 C 1.38956 * 119.99770 * 163.14131 * 15 14 12 18 18 N 1.31414 * 119.99813 * 349.48087 * 17 15 14 19 19 Si 1.86798 * 120.00034 * 169.47792 * 17 15 14 20 20 H 1.48502 * 109.47142 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46931 * 120.00192 * 19 17 15 22 22 H 1.48499 * 109.47285 * 239.99884 * 19 17 15 23 23 C 1.46495 * 120.00027 * 355.00905 * 14 12 2 24 24 C 1.50691 * 109.47319 * 267.81909 * 23 14 12 25 25 O 1.20823 * 120.00295 * 0.02562 * 24 23 14 26 26 O 1.34235 * 120.00336 * 180.02562 * 24 23 14 27 27 H 1.08999 * 109.47044 * 52.67732 * 1 2 3 28 28 H 1.08999 * 109.47275 * 172.67297 * 1 2 3 29 29 H 1.09005 * 109.47471 * 292.67531 * 1 2 3 30 30 H 1.09009 * 109.46730 * 299.99436 * 5 4 2 31 31 H 1.08991 * 109.47786 * 59.99366 * 5 4 2 32 32 H 1.09004 * 111.12679 * 273.27679 * 8 6 5 33 33 H 1.09002 * 111.12777 * 37.44120 * 8 6 5 34 34 H 1.08997 * 110.88365 * 207.75650 * 9 8 6 35 35 H 1.08994 * 110.93518 * 84.25171 * 9 8 6 36 36 H 1.08999 * 109.83069 * 261.77607 * 10 9 8 37 37 H 1.08995 * 109.90510 * 140.84276 * 10 9 8 38 38 H 0.97000 * 119.99909 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.47015 * 27.82387 * 23 14 12 40 40 H 1.09006 * 109.47218 * 147.81484 * 23 14 12 41 41 H 0.96698 * 117.00021 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1999 0.1831 2.2941 6 6 2.7077 -0.6405 3.4794 7 1 3.6003 -1.1987 3.1966 8 6 3.0108 0.2834 4.6857 9 6 2.8592 -0.7159 5.8664 10 6 1.7352 -1.6486 5.3659 11 8 1.6836 -1.5370 3.9387 12 6 2.0324 -0.7105 -1.2303 13 8 2.5155 -1.8190 -1.1357 14 7 1.9447 -0.1143 -2.4358 15 6 2.4934 -0.7151 -3.5392 16 1 3.2212 -1.5039 -3.4188 17 6 2.1174 -0.3053 -4.8126 18 7 1.0943 0.5050 -4.9667 19 14 3.0661 -0.9061 -6.3053 20 1 4.1652 -1.8026 -5.8654 21 1 2.1507 -1.6513 -7.2066 22 1 3.6361 0.2575 -7.0308 23 6 1.2632 1.1758 -2.5671 24 6 -0.1864 0.9458 -2.9086 25 8 -0.6073 -0.1803 -3.0294 26 8 -1.0101 1.9920 -3.0785 27 1 -0.3633 0.6231 -0.8172 28 1 -0.3634 -1.0193 -0.1311 29 1 -0.3634 0.3962 0.9483 30 1 2.9319 0.9515 2.0450 31 1 1.2537 0.6549 2.5588 32 1 4.0249 0.6795 4.6322 33 1 2.2797 1.0887 4.7573 34 1 2.5572 -0.1986 6.7769 35 1 3.7825 -1.2725 6.0265 36 1 0.7815 -1.3418 5.7954 37 1 1.9540 -2.6782 5.6486 38 1 0.8320 0.7914 -5.8555 39 1 1.3327 1.7209 -1.6257 40 1 1.7353 1.7572 -3.3591 41 1 -1.9312 1.7945 -3.2969 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736697798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:21 Heat of formation + Delta-G solvation = -194.780306 kcal Electronic energy + Delta-G solvation = -25904.643196 eV Core-core repulsion = 21978.984251 eV Total energy + Delta-G solvation = -3925.658945 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.76413 -39.43460 -38.33379 -36.91074 -35.13032 -34.33761 -32.36833 -32.14453 -31.15666 -29.79161 -27.63261 -25.61893 -25.16630 -22.93387 -21.78878 -21.28988 -21.04259 -19.16538 -17.26105 -17.06162 -16.96256 -16.54420 -16.12368 -15.60303 -15.46720 -15.22673 -14.82049 -14.63539 -14.34591 -13.95432 -13.66421 -13.45171 -13.19195 -12.73005 -12.25973 -12.06846 -11.93330 -11.77922 -11.70012 -11.58860 -11.45010 -11.29752 -11.17105 -11.05690 -10.96448 -10.73047 -10.36722 -10.33249 -10.21812 -9.52584 -9.49293 -9.38913 -9.05005 -8.33608 -7.92192 -6.43459 -3.93213 3.13530 3.24275 3.30984 3.49427 3.59804 3.72659 3.77347 4.16345 4.28387 4.31786 4.62463 4.70744 4.89639 5.04764 5.05941 5.14804 5.21092 5.31582 5.40622 5.44653 5.48159 5.50007 5.59140 5.66464 5.69743 5.79544 5.90208 5.98348 6.06947 6.14433 6.51252 6.64597 6.67428 7.01797 7.44932 7.51340 7.63957 7.99336 8.38410 9.08667 9.16295 9.31386 9.82567 10.64977 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.003814 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.784353 B = 7339.290828 C = 8056.857863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 H 0.070 0.930 4 O -0.346 6.346 5 C 0.059 3.941 6 C 0.085 3.915 7 H 0.081 0.919 8 C -0.149 4.149 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.367 6.367 12 C 0.464 3.536 13 O -0.552 6.552 14 N -0.435 5.435 15 C -0.291 4.291 16 H 0.107 0.893 17 C 0.027 3.973 18 N -0.896 5.896 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.150 3.850 24 C 0.499 3.501 25 O -0.506 6.506 26 O -0.539 6.539 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.271 0.729 39 H 0.069 0.931 40 H 0.127 0.873 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 7.454 15.451 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 H 0.088 0.912 4 O -0.264 6.264 5 C -0.018 4.018 6 C 0.027 3.973 7 H 0.099 0.901 8 C -0.187 4.187 9 C -0.192 4.192 10 C -0.030 4.030 11 O -0.286 6.286 12 C 0.251 3.749 13 O -0.432 6.432 14 N -0.157 5.157 15 C -0.418 4.418 16 H 0.125 0.875 17 C -0.173 4.173 18 N -0.538 5.538 19 Si 0.767 3.233 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.206 1.206 23 C 0.023 3.977 24 C 0.340 3.660 25 O -0.392 6.392 26 O -0.350 6.350 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.144 0.856 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 0.932 6.393 15.270 16.581 hybrid contribution -0.438 0.130 -0.944 1.049 sum 0.494 6.523 14.326 15.749 Atomic orbital electron populations 1.22262 0.94430 1.03940 1.01556 1.21932 0.94680 0.95488 0.86411 0.91222 1.88122 1.86486 1.33314 1.18465 1.22702 0.99827 0.92696 0.86574 1.22988 0.91604 0.90145 0.92541 0.90095 1.23268 1.03235 0.98405 0.93792 1.23124 0.99750 0.97537 0.98829 1.23125 0.98341 0.99381 0.82128 1.88582 1.54401 1.65973 1.19653 1.19801 0.84297 0.86770 0.83992 1.90556 1.47835 1.19173 1.85628 1.43386 1.48429 1.17244 1.06677 1.19814 1.20051 1.19247 0.82683 0.87486 1.25236 0.95824 0.97058 0.99184 1.69359 1.25012 1.35725 1.23723 0.85634 0.79141 0.78404 0.80144 1.19193 1.20798 1.20648 1.20698 0.87326 0.88060 1.01588 1.23351 0.88346 0.82221 0.72078 1.90612 1.76366 1.24872 1.47307 1.84510 1.24716 1.41628 1.84130 0.91683 0.91052 0.92237 0.92134 0.92808 0.89504 0.90089 0.90046 0.90426 0.91529 0.91522 0.91760 0.91274 0.85554 0.75412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.01 37.16 0.33 -2.74 16 2 C 0.08 1.53 2.30 -27.89 -0.06 1.47 16 3 H 0.07 1.16 6.49 -51.93 -0.34 0.83 16 4 O -0.35 -6.98 9.56 -57.54 -0.55 -7.53 16 5 C 0.06 0.85 5.45 37.16 0.20 1.06 16 6 C 0.08 1.11 3.72 -25.71 -0.10 1.02 16 7 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 8 C -0.15 -1.31 6.58 -24.42 -0.16 -1.47 16 9 C -0.15 -1.22 7.02 -24.72 -0.17 -1.39 16 10 C 0.05 0.49 7.80 37.88 0.30 0.79 16 11 O -0.37 -5.56 11.04 -35.96 -0.40 -5.96 16 12 C 0.46 11.89 6.96 -10.99 -0.08 11.81 16 13 O -0.55 -16.42 16.23 -13.99 -0.23 -16.65 16 14 N -0.44 -11.16 2.12 -116.10 -0.25 -11.41 16 15 C -0.29 -8.09 9.37 -14.93 -0.14 -8.23 16 16 H 0.11 3.12 7.36 -52.49 -0.39 2.74 16 17 C 0.03 0.72 5.17 -17.46 -0.09 0.63 16 18 N -0.90 -23.34 8.03 55.50 0.45 -22.90 16 19 Si 0.94 20.94 29.56 -169.99 -5.03 15.91 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 C 0.15 3.27 4.80 -5.20 -0.02 3.25 16 24 C 0.50 11.19 3.55 36.00 0.13 11.32 16 25 O -0.51 -13.38 16.08 -18.75 -0.30 -13.68 16 26 O -0.54 -9.81 13.42 -39.27 -0.53 -10.34 16 27 H 0.06 1.22 4.07 -51.93 -0.21 1.00 16 28 H 0.07 1.52 8.13 -51.93 -0.42 1.10 16 29 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 30 H 0.06 0.73 8.09 -51.92 -0.42 0.31 16 31 H 0.05 0.70 7.75 -51.93 -0.40 0.30 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 39 H 0.07 1.22 5.72 -51.93 -0.30 0.93 16 40 H 0.13 2.84 6.61 -51.93 -0.34 2.49 16 41 H 0.39 5.56 9.10 45.56 0.41 5.98 16 LS Contribution 335.38 15.07 5.05 5.05 Total: -1.00 -36.25 335.38 -6.54 -42.78 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.90 Total: 7.22 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: 0.13 Total: 17.49 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.20 Total: -34.31 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -2.00 Total: -54.15 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.25 -6.54 -42.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736697798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.999 kcal (2) G-P(sol) polarization free energy of solvation -36.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds