Wall clock time and date at job start Fri Apr 10 2020 17:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47315 * 2 1 4 4 O 1.42908 * 109.47073 * 119.99423 * 2 1 3 5 5 C 1.42898 * 113.99969 * 270.00584 * 4 2 1 6 6 C 1.53000 * 109.47161 * 179.97438 * 5 4 2 7 7 H 1.09002 * 110.27147 * 54.29321 * 6 5 4 8 8 C 1.54942 * 110.30941 * 176.38543 * 6 5 4 9 9 C 1.55418 * 100.89349 * 155.28776 * 8 6 5 10 10 C 1.54385 * 102.30856 * 325.99130 * 9 8 6 11 11 O 1.43241 * 107.58889 * 21.28164 * 10 9 8 12 12 C 1.50696 * 109.47550 * 239.99370 * 2 1 3 13 13 O 1.21292 * 119.99893 * 253.51901 * 12 2 1 14 14 N 1.34775 * 119.99909 * 73.50918 * 12 2 1 15 15 C 1.37096 * 119.99710 * 175.00181 * 14 12 2 16 16 H 1.07997 * 120.00611 * 342.86706 * 15 14 12 17 17 C 1.38956 * 119.99770 * 163.14131 * 15 14 12 18 18 N 1.31414 * 119.99813 * 349.48087 * 17 15 14 19 19 Si 1.86798 * 120.00034 * 169.47792 * 17 15 14 20 20 H 1.48502 * 109.47142 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46931 * 120.00192 * 19 17 15 22 22 H 1.48499 * 109.47285 * 239.99884 * 19 17 15 23 23 C 1.46495 * 120.00027 * 355.00905 * 14 12 2 24 24 C 1.50691 * 109.47319 * 267.81909 * 23 14 12 25 25 O 1.20823 * 120.00295 * 0.02562 * 24 23 14 26 26 O 1.34235 * 120.00336 * 180.02562 * 24 23 14 27 27 H 1.08999 * 109.47044 * 52.67732 * 1 2 3 28 28 H 1.08999 * 109.47275 * 172.67297 * 1 2 3 29 29 H 1.09005 * 109.47471 * 292.67531 * 1 2 3 30 30 H 1.09009 * 109.46730 * 299.99436 * 5 4 2 31 31 H 1.08991 * 109.47786 * 59.99366 * 5 4 2 32 32 H 1.09004 * 111.12679 * 273.27679 * 8 6 5 33 33 H 1.09002 * 111.12777 * 37.44120 * 8 6 5 34 34 H 1.08997 * 110.88365 * 207.75650 * 9 8 6 35 35 H 1.08994 * 110.93518 * 84.25171 * 9 8 6 36 36 H 1.08999 * 109.83069 * 261.77607 * 10 9 8 37 37 H 1.08995 * 109.90510 * 140.84276 * 10 9 8 38 38 H 0.97000 * 119.99909 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.47015 * 27.82387 * 23 14 12 40 40 H 1.09006 * 109.47218 * 147.81484 * 23 14 12 41 41 H 0.96698 * 117.00021 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1999 0.1831 2.2941 6 6 2.7077 -0.6405 3.4794 7 1 3.6003 -1.1987 3.1966 8 6 3.0108 0.2834 4.6857 9 6 2.8592 -0.7159 5.8664 10 6 1.7352 -1.6486 5.3659 11 8 1.6836 -1.5370 3.9387 12 6 2.0324 -0.7105 -1.2303 13 8 2.5155 -1.8190 -1.1357 14 7 1.9447 -0.1143 -2.4358 15 6 2.4934 -0.7151 -3.5392 16 1 3.2212 -1.5039 -3.4188 17 6 2.1174 -0.3053 -4.8126 18 7 1.0943 0.5050 -4.9667 19 14 3.0661 -0.9061 -6.3053 20 1 4.1652 -1.8026 -5.8654 21 1 2.1507 -1.6513 -7.2066 22 1 3.6361 0.2575 -7.0308 23 6 1.2632 1.1758 -2.5671 24 6 -0.1864 0.9458 -2.9086 25 8 -0.6073 -0.1803 -3.0294 26 8 -1.0101 1.9920 -3.0785 27 1 -0.3633 0.6231 -0.8172 28 1 -0.3634 -1.0193 -0.1311 29 1 -0.3634 0.3962 0.9483 30 1 2.9319 0.9515 2.0450 31 1 1.2537 0.6549 2.5588 32 1 4.0249 0.6795 4.6322 33 1 2.2797 1.0887 4.7573 34 1 2.5572 -0.1986 6.7769 35 1 3.7825 -1.2725 6.0265 36 1 0.7815 -1.3418 5.7954 37 1 1.9540 -2.6782 5.6486 38 1 0.8320 0.7914 -5.8555 39 1 1.3327 1.7209 -1.6257 40 1 1.7353 1.7572 -3.3591 41 1 -1.9312 1.7945 -3.2969 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736697798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:20 Heat of formation + Delta-G solvation = -221.563956 kcal Electronic energy + Delta-G solvation = -25905.804622 eV Core-core repulsion = 21978.984251 eV Total energy + Delta-G solvation = -3926.820371 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.46873 -40.50502 -40.01516 -38.44122 -36.95949 -36.22476 -34.06838 -33.16252 -32.56159 -31.01313 -29.45017 -27.27910 -26.42486 -24.56200 -22.80559 -22.51579 -22.24070 -20.93850 -18.98770 -18.79410 -18.37371 -17.97063 -17.45388 -17.14865 -16.92535 -16.60997 -16.41117 -16.05299 -15.90695 -15.58867 -15.06870 -14.91543 -14.35982 -14.11133 -13.76678 -13.54273 -13.45402 -13.25542 -13.15815 -13.02703 -12.70249 -12.62745 -12.51355 -12.36461 -12.15362 -12.14871 -12.04995 -11.95943 -11.65260 -11.45147 -10.96539 -10.81057 -10.46109 -10.24523 -9.90922 -8.44201 -6.01915 1.33495 1.40538 1.54454 1.71110 1.93203 2.08233 2.46169 2.62870 2.89681 3.07609 3.14667 3.57298 3.68962 3.80429 3.94292 3.99995 4.04328 4.16711 4.26350 4.33443 4.39665 4.48903 4.54851 4.62874 4.71817 4.80495 4.84008 4.90721 4.99544 5.01374 5.03455 5.11448 5.26873 5.40283 5.88352 6.07011 6.10664 6.23596 6.43421 7.07463 7.26499 7.56252 7.87092 8.61020 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.003814 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.784353 B = 7339.290828 C = 8056.857863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.087 3.913 3 H 0.111 0.889 4 O -0.384 6.384 5 C 0.050 3.950 6 C 0.074 3.926 7 H 0.060 0.940 8 C -0.137 4.137 9 C -0.147 4.147 10 C 0.035 3.965 11 O -0.408 6.408 12 C 0.445 3.555 13 O -0.613 6.613 14 N -0.442 5.442 15 C -0.332 4.332 16 H 0.076 0.924 17 C 0.000 4.000 18 N -0.898 5.898 19 Si 1.000 3.000 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.257 1.257 23 C 0.145 3.855 24 C 0.508 3.492 25 O -0.554 6.554 26 O -0.521 6.521 27 H 0.066 0.934 28 H 0.033 0.967 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.276 0.724 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 10.419 16.512 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.026 3.974 3 H 0.129 0.871 4 O -0.303 6.303 5 C -0.026 4.026 6 C 0.017 3.983 7 H 0.078 0.922 8 C -0.175 4.175 9 C -0.184 4.184 10 C -0.041 4.041 11 O -0.329 6.329 12 C 0.234 3.766 13 O -0.498 6.498 14 N -0.162 5.162 15 C -0.460 4.460 16 H 0.094 0.906 17 C -0.199 4.199 18 N -0.539 5.539 19 Si 0.824 3.176 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.181 1.181 23 C 0.019 3.981 24 C 0.351 3.649 25 O -0.443 6.443 26 O -0.333 6.333 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 0.654 9.445 16.338 18.883 hybrid contribution -0.442 -0.770 -1.264 1.545 sum 0.212 8.675 15.074 17.393 Atomic orbital electron populations 1.22180 0.93446 1.01904 1.03581 1.21794 0.95095 0.96255 0.84216 0.87108 1.88099 1.86707 1.35787 1.19682 1.23098 1.01620 0.92907 0.85022 1.23133 0.90429 0.90779 0.93966 0.92207 1.23264 1.04772 0.97947 0.91468 1.23132 0.98947 0.96902 0.99424 1.23373 1.00168 1.00315 0.80266 1.88537 1.55113 1.66864 1.22352 1.20919 0.83395 0.86577 0.85690 1.90497 1.50569 1.22009 1.86757 1.43547 1.48117 1.18246 1.06305 1.19708 1.21388 1.20323 0.84548 0.90595 1.25962 0.96330 0.96757 1.00897 1.69449 1.24802 1.35131 1.24499 0.84776 0.77624 0.78463 0.76778 1.20009 1.21057 1.18112 1.20901 0.86742 0.86527 1.03881 1.23333 0.88796 0.81952 0.70847 1.90613 1.77332 1.26871 1.49485 1.84432 1.25982 1.39546 1.83346 0.91565 0.94770 0.88396 0.89474 0.91026 0.87571 0.88583 0.87388 0.89960 0.90375 0.91621 0.91318 0.86604 0.86066 0.73003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 9.01 71.98 0.65 -4.93 16 2 C 0.09 3.44 2.30 29.85 0.07 3.51 16 3 H 0.11 3.35 6.49 -2.39 -0.02 3.33 16 4 O -0.38 -15.51 9.56 -127.65 -1.22 -16.73 16 5 C 0.05 1.34 5.45 71.98 0.39 1.73 16 6 C 0.07 1.89 3.72 31.26 0.12 2.01 16 7 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 8 C -0.14 -1.99 6.58 32.09 0.21 -1.78 16 9 C -0.15 -1.92 7.02 31.90 0.22 -1.70 16 10 C 0.03 0.69 7.80 72.45 0.56 1.26 16 11 O -0.41 -12.37 11.04 -148.29 -1.64 -14.01 16 12 C 0.44 23.49 6.96 87.66 0.61 24.10 16 13 O -0.61 -38.78 16.23 15.61 0.25 -38.53 16 14 N -0.44 -23.07 2.12 -639.62 -1.35 -24.42 16 15 C -0.33 -19.15 9.37 84.04 0.79 -18.37 16 16 H 0.08 4.73 7.36 -2.91 -0.02 4.71 16 17 C 0.00 0.03 5.17 84.93 0.44 0.46 16 18 N -0.90 -46.15 8.03 21.67 0.17 -45.97 16 19 Si 1.00 43.07 29.56 68.60 2.03 45.10 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 23 C 0.14 6.13 4.80 85.63 0.41 6.54 16 24 C 0.51 22.07 3.55 71.23 0.25 22.32 16 25 O -0.55 -29.35 16.08 21.97 0.35 -29.00 16 26 O -0.52 -17.49 13.42 -51.46 -0.69 -18.18 16 27 H 0.07 2.35 4.07 -2.39 -0.01 2.34 16 28 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 29 H 0.10 2.75 7.75 -2.38 -0.02 2.73 16 30 H 0.09 1.84 8.09 -2.38 -0.02 1.82 16 31 H 0.07 1.65 7.75 -2.39 -0.02 1.63 16 32 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 1.13 8.06 -2.39 -0.02 1.11 16 34 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 38 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 39 H 0.12 3.73 5.72 -2.39 -0.01 3.72 16 40 H 0.12 5.28 6.61 -2.38 -0.02 5.26 16 41 H 0.41 10.53 9.10 -74.06 -0.67 9.86 16 Total: -1.00 -84.17 335.38 3.02 -81.15 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.39 Total: 25.44 kcal Atomic # 6 Polarization: 30.43 SS G_CDS: 4.73 Total: 35.15 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -1.18 Total: -70.40 kcal Atomic # 8 Polarization: -113.51 SS G_CDS: -2.94 Total: -116.45 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -84.17 3.02 -81.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736697798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.415 kcal (2) G-P(sol) polarization free energy of solvation -84.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds