Wall clock time and date at job start Fri Apr 10 2020 17:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47090 * 2 1 4 4 O 1.42895 * 109.47438 * 239.99682 * 2 1 3 5 5 C 1.42903 * 113.99762 * 89.99527 * 4 2 1 6 6 C 1.53002 * 109.46935 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.82556 * 305.56747 * 6 5 4 8 8 C 1.54386 * 109.82974 * 184.58924 * 6 5 4 9 9 C 1.55310 * 102.25021 * 219.13046 * 8 6 5 10 10 C 1.54945 * 100.94226 * 34.13434 * 9 8 6 11 11 O 1.43239 * 109.83080 * 66.45796 * 6 5 4 12 12 C 1.50702 * 109.47359 * 119.99732 * 2 1 3 13 13 O 1.21288 * 120.00254 * 103.23980 * 12 2 1 14 14 N 1.34778 * 119.99748 * 283.24045 * 12 2 1 15 15 C 1.37096 * 119.99727 * 185.75693 * 14 12 2 16 16 H 1.08004 * 120.00344 * 3.84389 * 15 14 12 17 17 C 1.38956 * 120.00078 * 183.84175 * 15 14 12 18 18 N 1.31415 * 119.99626 * 20.16649 * 17 15 14 19 19 Si 1.86802 * 120.00015 * 200.16807 * 17 15 14 20 20 H 1.48495 * 109.47321 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.46834 * 120.00043 * 19 17 15 22 22 H 1.48497 * 109.47030 * 239.99878 * 19 17 15 23 23 C 1.46504 * 120.00159 * 5.75337 * 14 12 2 24 24 C 1.50704 * 109.46983 * 94.51664 * 23 14 12 25 25 O 1.20831 * 119.99675 * 359.97438 * 24 23 14 26 26 O 1.34221 * 119.99957 * 180.02562 * 24 23 14 27 27 H 1.08994 * 109.46881 * 187.78024 * 1 2 3 28 28 H 1.09006 * 109.46907 * 307.77108 * 1 2 3 29 29 H 1.08995 * 109.47209 * 67.77317 * 1 2 3 30 30 H 1.08996 * 109.47531 * 300.00605 * 5 4 2 31 31 H 1.08999 * 109.47107 * 60.00372 * 5 4 2 32 32 H 1.08997 * 110.84824 * 337.31857 * 8 6 5 33 33 H 1.08998 * 110.84681 * 100.94453 * 8 6 5 34 34 H 1.09002 * 111.12061 * 276.21151 * 9 8 6 35 35 H 1.08997 * 111.12101 * 152.05275 * 9 8 6 36 36 H 1.09004 * 110.30568 * 204.63943 * 10 9 8 37 37 H 1.08997 * 110.39586 * 82.51228 * 10 9 8 38 38 H 0.97000 * 119.99756 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.46891 * 214.51389 * 23 14 12 40 40 H 1.08993 * 109.47103 * 334.51369 * 23 14 12 41 41 H 0.96699 * 117.00244 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2000 0.1829 -2.2940 6 6 2.7079 -0.6409 -3.4791 7 1 3.6014 -1.1938 -3.1891 8 6 3.0296 0.2924 -4.6662 9 6 2.5270 -0.5345 -5.8810 10 6 1.3043 -1.2559 -5.2602 11 8 1.6903 -1.5527 -3.9088 12 6 2.0324 -0.7103 1.2305 13 8 2.4614 -1.8416 1.1451 14 7 2.0050 -0.0885 2.4259 15 6 2.5690 -0.6869 3.5229 16 1 3.0894 -1.6274 3.4173 17 6 2.4710 -0.0835 4.7708 18 7 1.5388 0.8153 4.9946 19 14 3.6646 -0.5498 6.1300 20 1 4.6109 -1.5776 5.6268 21 1 4.4219 0.6538 6.5581 22 1 2.9094 -1.0965 7.2858 23 6 1.3726 1.2269 2.5531 24 6 -0.0560 1.0562 3.0016 25 8 -0.5004 -0.0507 3.1946 26 8 -0.8349 2.1337 3.1855 27 1 -0.3633 -1.0182 0.1391 28 1 -0.3633 0.6295 0.8124 29 1 -0.3633 0.3887 -0.9512 30 1 1.2538 0.6546 -2.5588 31 1 2.9319 0.9513 -2.0450 32 1 2.4810 1.2304 -4.5818 33 1 4.1020 0.4738 -4.7374 34 1 3.2812 -1.2503 -6.2080 35 1 2.2243 0.1166 -6.7011 36 1 1.0920 -2.1764 -5.8039 37 1 0.4323 -0.6019 -5.2696 38 1 1.4701 1.2362 5.8658 39 1 1.9155 1.8215 3.2878 40 1 1.3926 1.7344 1.5887 41 1 -1.7440 1.9742 3.4739 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736697801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:23 Heat of formation + Delta-G solvation = -222.355474 kcal Electronic energy + Delta-G solvation = -25890.307349 eV Core-core repulsion = 21963.452655 eV Total energy + Delta-G solvation = -3926.854694 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.46831 -40.56049 -40.06399 -38.41851 -36.99082 -36.32088 -34.05889 -33.16601 -32.55534 -30.96844 -29.48792 -27.29061 -26.46298 -24.58165 -22.84595 -22.58035 -22.12274 -20.89812 -19.02747 -18.83558 -18.40441 -18.01774 -17.47114 -17.17817 -16.91193 -16.67005 -16.39609 -16.06369 -15.88654 -15.51756 -15.12154 -14.82647 -14.34988 -14.17699 -13.75189 -13.62880 -13.50800 -13.35927 -13.17014 -13.05969 -12.64640 -12.61363 -12.44152 -12.31468 -12.19346 -12.11388 -12.06951 -12.05091 -11.67329 -11.51806 -10.94954 -10.80915 -10.45821 -10.24705 -10.00519 -8.46099 -5.94855 1.31936 1.41417 1.55446 1.66942 1.86651 2.07682 2.45001 2.56147 2.94335 3.08354 3.16463 3.58423 3.66201 3.77868 3.93883 3.97474 4.03734 4.19586 4.25475 4.31997 4.41072 4.46328 4.52718 4.67770 4.72719 4.83085 4.83530 4.91779 4.96596 4.98076 5.06123 5.09667 5.28714 5.43042 5.84394 5.98992 6.10280 6.25690 6.42441 7.06713 7.26226 7.47691 7.86748 8.58291 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.003866 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.558879 B = 7240.875228 C = 7976.867508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.088 3.912 3 H 0.109 0.891 4 O -0.382 6.382 5 C 0.039 3.961 6 C 0.075 3.925 7 H 0.068 0.932 8 C -0.138 4.138 9 C -0.147 4.147 10 C 0.033 3.967 11 O -0.406 6.406 12 C 0.440 3.560 13 O -0.615 6.615 14 N -0.440 5.440 15 C -0.335 4.335 16 H 0.076 0.924 17 C 0.002 3.998 18 N -0.895 5.895 19 Si 0.995 3.005 20 H -0.278 1.278 21 H -0.256 1.256 22 H -0.282 1.282 23 C 0.136 3.864 24 C 0.504 3.496 25 O -0.555 6.555 26 O -0.517 6.517 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.278 0.722 39 H 0.133 0.867 40 H 0.117 0.883 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.609 10.686 -16.897 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.027 3.973 3 H 0.126 0.874 4 O -0.301 6.301 5 C -0.037 4.037 6 C 0.017 3.983 7 H 0.086 0.914 8 C -0.175 4.175 9 C -0.184 4.184 10 C -0.042 4.042 11 O -0.326 6.326 12 C 0.230 3.770 13 O -0.501 6.501 14 N -0.160 5.160 15 C -0.462 4.462 16 H 0.094 0.906 17 C -0.198 4.198 18 N -0.535 5.535 19 Si 0.819 3.181 20 H -0.203 1.203 21 H -0.180 1.180 22 H -0.208 1.208 23 C 0.011 3.989 24 C 0.347 3.653 25 O -0.445 6.445 26 O -0.329 6.329 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.150 0.850 40 H 0.134 0.866 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -0.219 9.666 -16.733 19.325 hybrid contribution -0.412 -0.565 1.354 1.524 sum -0.630 9.101 -15.379 17.881 Atomic orbital electron populations 1.22129 0.93410 1.01922 1.03582 1.21786 0.95139 0.96123 0.84283 0.87370 1.88101 1.86676 1.35716 1.19615 1.23374 1.01380 0.93216 0.85764 1.22896 0.90600 0.90978 0.93799 0.91413 1.23121 1.04146 0.98686 0.91568 1.23265 0.97225 0.99572 0.98327 1.23666 0.97892 1.00904 0.81784 1.88567 1.57445 1.55898 1.30722 1.20827 0.83620 0.86918 0.85632 1.90493 1.52308 1.20690 1.86589 1.43655 1.48574 1.16625 1.07158 1.19709 1.31437 1.07913 0.87136 0.90645 1.25889 0.97838 0.96565 0.99500 1.69733 1.29741 1.29152 1.24912 0.84858 0.77850 0.78681 0.76723 1.20259 1.17988 1.20819 1.21183 0.87810 0.86468 1.03455 1.23594 0.88343 0.81458 0.71936 1.90625 1.75055 1.28969 1.49808 1.84440 1.28939 1.38503 1.81018 0.94613 0.91725 0.88321 0.91257 0.90032 0.88407 0.87972 0.90142 0.87153 0.89369 0.91413 0.91128 0.84961 0.86563 0.72845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 9.29 71.98 0.67 -4.81 16 2 C 0.09 3.46 2.30 29.85 0.07 3.53 16 3 H 0.11 3.32 6.35 -2.39 -0.02 3.30 16 4 O -0.38 -15.45 9.56 -126.80 -1.21 -16.67 16 5 C 0.04 1.05 5.28 71.98 0.38 1.43 16 6 C 0.07 1.90 3.81 31.07 0.12 2.02 16 7 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 8 C -0.14 -1.98 6.54 31.86 0.21 -1.77 16 9 C -0.15 -1.86 7.16 32.05 0.23 -1.64 16 10 C 0.03 0.63 7.78 72.65 0.56 1.20 16 11 O -0.41 -12.18 11.00 -146.53 -1.61 -13.79 16 12 C 0.44 23.33 6.91 87.66 0.61 23.94 16 13 O -0.62 -39.06 16.18 15.43 0.25 -38.81 16 14 N -0.44 -23.07 2.15 -639.58 -1.37 -24.45 16 15 C -0.33 -19.43 9.38 84.04 0.79 -18.64 16 16 H 0.08 4.80 7.27 -2.91 -0.02 4.78 16 17 C 0.00 0.12 5.11 84.93 0.43 0.56 16 18 N -0.89 -45.36 8.51 21.67 0.18 -45.18 16 19 Si 1.00 42.59 29.60 68.60 2.03 44.62 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 23 C 0.14 5.79 4.82 85.63 0.41 6.20 16 24 C 0.50 21.89 4.09 71.24 0.29 22.19 16 25 O -0.55 -29.40 16.75 21.95 0.37 -29.03 16 26 O -0.52 -17.23 13.42 -51.33 -0.69 -17.92 16 27 H 0.03 1.51 8.13 -2.39 -0.02 1.49 16 28 H 0.06 2.26 4.62 -2.38 -0.01 2.25 16 29 H 0.10 2.72 7.75 -2.39 -0.02 2.70 16 30 H 0.07 1.58 7.75 -2.39 -0.02 1.56 16 31 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 32 H 0.10 1.07 7.85 -2.39 -0.02 1.05 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 39 H 0.13 5.81 6.12 -2.39 -0.01 5.80 16 40 H 0.12 3.79 5.59 -2.39 -0.01 3.78 16 41 H 0.41 10.35 9.10 -74.06 -0.67 9.67 16 Total: -1.00 -84.29 336.73 3.11 -81.19 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.39 Total: 25.85 kcal Atomic # 6 Polarization: 29.42 SS G_CDS: 4.77 Total: 34.19 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -1.19 Total: -69.63 kcal Atomic # 8 Polarization: -113.32 SS G_CDS: -2.90 Total: -116.22 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -84.29 3.11 -81.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736697801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.170 kcal (2) G-P(sol) polarization free energy of solvation -84.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds