Wall clock time and date at job start Fri Apr 10 2020 17:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47322 * 320.06366 * 3 2 1 5 5 S 1.65602 * 119.99983 * 164.99669 * 4 3 2 6 6 O 1.42099 * 106.40392 * 311.46812 * 5 4 3 7 7 O 1.42100 * 106.40203 * 178.54068 * 5 4 3 8 8 N 1.65606 * 107.21281 * 65.00503 * 5 4 3 9 9 C 1.47076 * 120.87995 * 90.00406 * 8 5 4 10 10 C 1.53244 * 108.51741 * 231.15839 * 9 8 5 11 11 N 1.46897 * 109.34005 * 306.16771 * 10 9 8 12 12 C 1.46896 * 111.00090 * 187.25044 * 11 10 9 13 13 C 1.52996 * 109.47256 * 170.00015 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.46900 * 111.26748 * 63.10372 * 11 10 9 23 23 C 1.47077 * 120.88181 * 269.97253 * 8 5 4 24 24 H 4.40644 * 5.51419 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.46789 * 200.06566 * 3 2 1 26 26 H 1.08998 * 109.47126 * 80.06596 * 3 2 1 27 27 H 0.96994 * 120.00124 * 345.00770 * 4 3 2 28 28 H 1.08999 * 109.63360 * 111.44985 * 9 8 5 29 29 H 1.08994 * 109.79273 * 350.96118 * 9 8 5 30 30 H 1.09004 * 109.49071 * 186.21071 * 10 9 8 31 31 H 1.08996 * 109.49407 * 66.12943 * 10 9 8 32 32 H 1.09004 * 109.46774 * 50.00214 * 12 11 10 33 33 H 1.09000 * 109.47723 * 290.00603 * 12 11 10 34 34 H 1.09004 * 109.47066 * 60.00378 * 13 12 11 35 35 H 1.08994 * 109.47405 * 300.00209 * 13 12 11 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.49214 * 56.85775 * 22 11 10 38 38 H 1.08999 * 109.49054 * 176.92954 * 22 11 10 39 39 H 1.09000 * 109.63049 * 248.55408 * 23 8 5 40 40 H 1.08999 * 109.62977 * 9.13175 * 23 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0581 0.8866 5 16 4.7172 -1.5402 0.8066 6 8 5.0017 -1.7565 -0.5687 7 8 4.8824 -2.5415 1.8014 8 7 5.6461 -0.2534 1.2796 9 6 6.0093 -0.0633 2.6921 10 6 5.6551 1.3716 3.0969 11 7 6.2872 2.3111 2.1611 12 6 6.1154 3.6987 2.6117 13 6 6.9883 4.6231 1.7608 14 6 6.8125 6.0465 2.2235 15 1 6.1453 6.2695 3.0429 16 6 7.5084 7.0635 1.6048 17 7 8.3212 6.7919 0.6073 18 14 7.2963 8.8268 2.1835 19 1 6.3330 8.8648 3.3129 20 1 8.6069 9.3613 2.6331 21 1 6.7810 9.6564 1.0647 22 6 5.7713 2.1329 0.7972 23 6 6.1303 0.7293 0.2983 24 1 -1.0498 -0.0001 0.0004 25 1 3.0089 0.9662 0.3526 26 1 3.0095 -0.1765 -1.0122 27 1 2.5318 -1.4769 1.5204 28 1 7.0794 -0.2263 2.8202 29 1 5.4549 -0.7665 3.3136 30 1 6.0175 1.5647 4.1066 31 1 4.5732 1.5014 3.0673 32 1 6.4116 3.7803 3.6576 33 1 5.0697 3.9881 2.5068 34 1 6.6921 4.5415 0.7149 35 1 8.0339 4.3338 1.8658 36 1 8.8105 7.5074 0.1718 37 1 4.6878 2.2521 0.7997 38 1 6.2180 2.8783 0.1392 39 1 7.2120 0.6424 0.1962 40 1 5.6533 0.5501 -0.6653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761030720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:45 Heat of formation + Delta-G solvation = -12.064698 kcal Electronic energy + Delta-G solvation = -22945.749541 eV Core-core repulsion = 19503.059361 eV Total energy + Delta-G solvation = -3442.690179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -38.81419 -37.49233 -36.31186 -36.01811 -34.98712 -32.87315 -32.56097 -31.13159 -29.74815 -26.80516 -26.35949 -23.89036 -23.59685 -21.06450 -20.23054 -19.40024 -19.01273 -18.13904 -17.37702 -16.54573 -16.41578 -15.52653 -15.06340 -14.91728 -14.62310 -14.57470 -14.36947 -14.20592 -14.09779 -13.77639 -12.89148 -12.60719 -12.42157 -12.33817 -12.26096 -12.12492 -11.83937 -11.49922 -11.24982 -11.11695 -11.04605 -10.94811 -10.91640 -10.64635 -10.55806 -9.94021 -9.82493 -9.53181 -9.16250 -9.10896 -8.37823 -7.82742 -6.04260 -4.06736 0.35452 2.21047 2.46309 2.85895 3.28054 3.35984 3.39116 3.39673 3.87589 4.20124 4.24297 4.45820 4.58725 4.81639 5.07925 5.09759 5.21743 5.31564 5.32365 5.33827 5.41610 5.51307 5.59285 5.74871 5.89029 6.01133 6.08256 6.13722 6.22761 6.36074 6.46306 6.66750 6.88246 7.20359 7.38624 7.45892 7.72238 7.82739 8.01994 8.37916 9.00525 9.57391 11.06995 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.019626 B = 0.003507 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.345521 B = 7981.430515 C = 8658.142250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.199 4.199 3 C 0.229 3.771 4 N -1.128 6.128 5 S 2.789 3.211 6 O -0.974 6.974 7 O -0.976 6.976 8 N -1.004 6.004 9 C 0.129 3.871 10 C 0.041 3.959 11 N -0.535 5.535 12 C 0.064 3.936 13 C 0.027 3.973 14 C -0.523 4.523 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.040 3.960 23 C 0.124 3.876 24 H 0.221 0.779 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.418 0.582 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.025 0.975 36 H 0.260 0.740 37 H 0.030 0.970 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 -15.559 0.449 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.201 4.201 3 C 0.104 3.896 4 N -0.888 5.888 5 S 2.797 3.203 6 O -0.957 6.957 7 O -0.960 6.960 8 N -0.846 5.846 9 C 0.003 3.997 10 C -0.089 4.089 11 N -0.260 5.260 12 C -0.063 4.063 13 C -0.010 4.010 14 C -0.562 4.562 15 H 0.072 0.928 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.090 4.090 23 C -0.001 4.001 24 H 0.238 0.762 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.251 0.749 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.761 -16.364 -0.099 19.586 hybrid contribution -1.590 1.542 0.726 2.331 sum -12.351 -14.823 0.627 19.304 Atomic orbital electron populations 1.24998 0.95934 0.98999 0.99377 1.22779 0.94097 1.01641 1.01546 1.18128 0.85087 0.91246 0.95115 1.56107 1.30326 1.51652 1.50712 1.01817 0.72176 0.72838 0.73463 1.93617 1.83763 1.84194 1.34148 1.93621 1.85256 1.56018 1.61082 1.58065 1.66163 1.44763 1.15575 1.21531 1.02116 0.96643 0.79366 1.22445 0.96753 0.92341 0.97403 1.61958 1.56914 1.05983 1.01098 1.22349 0.98551 0.85174 1.00192 1.19109 0.95278 0.92158 0.94435 1.21214 1.25642 0.92047 1.17285 0.92797 1.24983 0.95157 0.99068 0.95025 1.69974 1.27849 1.32438 1.22836 0.86553 0.77934 0.84954 0.78630 1.19816 1.20975 1.21038 1.22533 0.97440 0.96681 0.92322 1.21658 1.01400 0.87230 0.89851 0.76183 0.89151 0.88012 0.74883 0.90058 0.89565 0.89831 0.95138 0.91938 0.96224 0.96463 0.95615 0.93009 0.95236 0.88095 0.89758 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 19.25 29.55 0.57 -0.83 16 2 C -0.20 -1.88 13.49 -37.12 -0.50 -2.38 16 3 C 0.23 2.07 6.72 -6.83 -0.05 2.03 16 4 N -1.13 -10.35 6.04 -13.15 -0.08 -10.43 16 5 S 2.79 32.30 6.15 -107.50 -0.66 31.63 16 6 O -0.97 -13.75 16.39 -57.17 -0.94 -14.68 16 7 O -0.98 -13.54 16.92 -57.17 -0.97 -14.51 16 8 N -1.00 -11.60 3.39 -113.24 -0.38 -11.99 16 9 C 0.13 1.46 6.53 -3.60 -0.02 1.44 16 10 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 11 N -0.53 -8.64 4.63 -234.33 -1.08 -9.72 16 12 C 0.06 1.24 4.90 -3.83 -0.02 1.22 16 13 C 0.03 0.68 4.90 -27.88 -0.14 0.54 16 14 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.04 0.58 5.46 -3.70 -0.02 0.56 16 23 C 0.12 1.51 6.53 -3.61 -0.02 1.49 16 24 H 0.22 0.97 7.80 -54.10 -0.42 0.55 16 25 H 0.09 0.77 7.24 -51.93 -0.38 0.40 16 26 H 0.10 0.87 7.75 -51.93 -0.40 0.47 16 27 H 0.42 3.25 8.63 -34.47 -0.30 2.95 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 0.84 7.23 -51.93 -0.38 0.47 16 30 H 0.08 1.01 7.99 -51.93 -0.41 0.60 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 1.21 7.97 -51.93 -0.41 0.80 16 33 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 34 H 0.02 0.44 6.40 -51.93 -0.33 0.11 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.03 0.40 7.24 -51.93 -0.38 0.02 16 38 H 0.10 1.66 6.16 -51.93 -0.32 1.34 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 0.93 7.22 -51.93 -0.37 0.55 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -33.65 344.00 -9.60 -43.25 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.76 Total: -1.04 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -0.63 Total: -8.47 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.81 Total: -57.47 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.90 Total: -29.19 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 32.30 SS G_CDS: -0.66 Total: 31.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.65 -9.60 -43.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761030720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.189 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds