Wall clock time and date at job start Fri Apr 10 2020 17:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47322 * 320.06366 * 3 2 1 5 5 S 1.65602 * 119.99983 * 164.99669 * 4 3 2 6 6 O 1.42099 * 106.40392 * 311.46812 * 5 4 3 7 7 O 1.42100 * 106.40203 * 178.54068 * 5 4 3 8 8 N 1.65606 * 107.21281 * 65.00503 * 5 4 3 9 9 C 1.47076 * 120.87995 * 90.00406 * 8 5 4 10 10 C 1.53244 * 108.51741 * 231.15839 * 9 8 5 11 11 N 1.46897 * 109.34005 * 306.16771 * 10 9 8 12 12 C 1.46896 * 111.00090 * 187.25044 * 11 10 9 13 13 C 1.52996 * 109.47256 * 170.00015 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.46900 * 111.26748 * 63.10372 * 11 10 9 23 23 C 1.47077 * 120.88181 * 269.97253 * 8 5 4 24 24 H 4.40644 * 5.51419 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.46789 * 200.06566 * 3 2 1 26 26 H 1.08998 * 109.47126 * 80.06596 * 3 2 1 27 27 H 0.96994 * 120.00124 * 345.00770 * 4 3 2 28 28 H 1.08999 * 109.63360 * 111.44985 * 9 8 5 29 29 H 1.08994 * 109.79273 * 350.96118 * 9 8 5 30 30 H 1.09004 * 109.49071 * 186.21071 * 10 9 8 31 31 H 1.08996 * 109.49407 * 66.12943 * 10 9 8 32 32 H 1.09004 * 109.46774 * 50.00214 * 12 11 10 33 33 H 1.09000 * 109.47723 * 290.00603 * 12 11 10 34 34 H 1.09004 * 109.47066 * 60.00378 * 13 12 11 35 35 H 1.08994 * 109.47405 * 300.00209 * 13 12 11 36 36 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.49214 * 56.85775 * 22 11 10 38 38 H 1.08999 * 109.49054 * 176.92954 * 22 11 10 39 39 H 1.09000 * 109.63049 * 248.55408 * 23 8 5 40 40 H 1.08999 * 109.62977 * 9.13175 * 23 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0581 0.8866 5 16 4.7172 -1.5402 0.8066 6 8 5.0017 -1.7565 -0.5687 7 8 4.8824 -2.5415 1.8014 8 7 5.6461 -0.2534 1.2796 9 6 6.0093 -0.0633 2.6921 10 6 5.6551 1.3716 3.0969 11 7 6.2872 2.3111 2.1611 12 6 6.1154 3.6987 2.6117 13 6 6.9883 4.6231 1.7608 14 6 6.8125 6.0465 2.2235 15 1 6.1453 6.2695 3.0429 16 6 7.5084 7.0635 1.6048 17 7 8.3212 6.7919 0.6073 18 14 7.2963 8.8268 2.1835 19 1 6.3330 8.8648 3.3129 20 1 8.6069 9.3613 2.6331 21 1 6.7810 9.6564 1.0647 22 6 5.7713 2.1329 0.7972 23 6 6.1303 0.7293 0.2983 24 1 -1.0498 -0.0001 0.0004 25 1 3.0089 0.9662 0.3526 26 1 3.0095 -0.1765 -1.0122 27 1 2.5318 -1.4769 1.5204 28 1 7.0794 -0.2263 2.8202 29 1 5.4549 -0.7665 3.3136 30 1 6.0175 1.5647 4.1066 31 1 4.5732 1.5014 3.0673 32 1 6.4116 3.7803 3.6576 33 1 5.0697 3.9881 2.5068 34 1 6.6921 4.5415 0.7149 35 1 8.0339 4.3338 1.8658 36 1 8.8105 7.5074 0.1718 37 1 4.6878 2.2521 0.7997 38 1 6.2180 2.8783 0.1392 39 1 7.2120 0.6424 0.1962 40 1 5.6533 0.5501 -0.6653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761030720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:43 Heat of formation + Delta-G solvation = -38.370573 kcal Electronic energy + Delta-G solvation = -22946.890249 eV Core-core repulsion = 19503.059361 eV Total energy + Delta-G solvation = -3443.830888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96641 -38.51112 -37.07746 -37.01674 -36.37122 -34.76650 -33.22703 -32.21111 -31.46092 -27.84587 -27.50309 -25.51857 -24.76148 -22.39536 -21.62537 -20.29297 -19.79405 -19.11370 -18.50435 -18.21274 -17.38616 -16.55325 -16.41757 -16.12417 -16.03760 -15.62506 -15.43783 -15.32256 -15.23011 -14.65267 -14.32027 -14.11901 -13.62578 -13.54598 -13.32688 -13.28462 -13.16069 -12.96865 -12.81846 -12.52870 -12.33793 -12.22214 -11.91925 -11.77025 -11.62632 -11.57398 -11.24687 -11.18160 -10.54601 -10.50343 -10.18729 -9.10133 -8.17186 -6.27382 -0.57985 1.41798 1.42879 1.46505 1.55081 1.82576 2.03412 2.42323 2.52307 3.07176 3.14737 3.17058 3.39413 3.61589 4.06691 4.08488 4.16665 4.29299 4.33450 4.40185 4.48901 4.61877 4.63360 4.71111 4.80773 4.86288 4.99811 5.03776 5.08129 5.12784 5.17710 5.45471 5.51101 5.72580 5.83029 5.93907 6.14317 6.33808 6.37329 6.58861 6.90591 7.41664 8.94740 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.019626 B = 0.003507 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.345521 B = 7981.430515 C = 8658.142250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.240 4.240 3 C 0.226 3.774 4 N -1.117 6.117 5 S 2.812 3.188 6 O -0.999 6.999 7 O -0.996 6.996 8 N -1.003 6.003 9 C 0.130 3.870 10 C 0.042 3.958 11 N -0.548 5.548 12 C 0.082 3.918 13 C 0.035 3.965 14 C -0.542 4.542 15 H 0.059 0.941 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.961 3.039 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.279 1.279 22 C 0.041 3.959 23 C 0.130 3.870 24 H 0.252 0.748 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.426 0.574 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.021 0.979 34 H -0.001 1.001 35 H -0.008 1.008 36 H 0.263 0.737 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.669 -15.749 1.360 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.241 4.241 3 C 0.101 3.899 4 N -0.880 5.880 5 S 2.820 3.180 6 O -0.982 6.982 7 O -0.980 6.980 8 N -0.844 5.844 9 C 0.004 3.996 10 C -0.088 4.088 11 N -0.273 5.273 12 C -0.045 4.045 13 C -0.002 4.002 14 C -0.580 4.580 15 H 0.077 0.923 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.787 3.213 19 H -0.186 1.186 20 H -0.206 1.206 21 H -0.205 1.205 22 C -0.088 4.088 23 C 0.004 3.996 24 H 0.268 0.732 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.261 0.739 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.017 0.983 35 H 0.011 0.989 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.580 -16.579 0.828 20.828 hybrid contribution -1.085 1.563 0.424 1.949 sum -13.665 -15.016 1.253 20.341 Atomic orbital electron populations 1.25836 0.96795 0.97278 0.97677 1.23044 0.94664 1.03256 1.03151 1.18189 0.85477 0.91140 0.95108 1.55812 1.29430 1.51752 1.50957 1.01004 0.72294 0.72300 0.72418 1.93584 1.84441 1.84635 1.35586 1.93589 1.85831 1.57029 1.61582 1.58000 1.66391 1.44373 1.15626 1.21599 1.02524 0.96072 0.79378 1.22528 0.97170 0.92097 0.96971 1.61844 1.58340 1.04697 1.02461 1.21944 0.97190 0.86384 0.99028 1.18940 0.94264 0.92621 0.94419 1.21665 1.25546 0.93512 1.17325 0.92316 1.25891 0.94791 1.03695 0.95073 1.70105 1.28866 1.33903 1.24129 0.85454 0.78088 0.79367 0.78441 1.18631 1.20618 1.20497 1.22491 0.97957 0.97319 0.91069 1.21566 1.01281 0.86033 0.90673 0.73208 0.88756 0.87888 0.73905 0.90163 0.87438 0.88945 0.94052 0.91762 0.96074 0.98256 0.98946 0.92863 0.93842 0.90785 0.90425 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 19.25 74.32 1.43 -0.71 16 2 C -0.24 -4.12 13.49 31.13 0.42 -3.70 16 3 C 0.23 3.78 6.72 84.58 0.57 4.35 16 4 N -1.12 -18.69 6.04 -195.52 -1.18 -19.87 16 5 S 2.81 61.26 6.15 -56.49 -0.35 60.91 16 6 O -1.00 -27.22 16.39 -128.00 -2.10 -29.32 16 7 O -1.00 -26.10 16.92 -128.00 -2.17 -28.26 16 8 N -1.00 -21.81 3.39 -512.19 -1.73 -23.54 16 9 C 0.13 2.70 6.53 86.35 0.56 3.26 16 10 C 0.04 0.99 5.62 86.39 0.49 1.48 16 11 N -0.55 -17.50 4.63 -895.27 -4.14 -21.65 16 12 C 0.08 3.19 4.90 86.30 0.42 3.61 16 13 C 0.03 1.77 4.90 29.85 0.15 1.92 16 14 C -0.54 -29.89 9.11 25.60 0.23 -29.66 16 15 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 16 C 0.00 0.20 5.46 84.66 0.46 0.66 16 17 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 18 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 19 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.04 1.19 5.46 86.38 0.47 1.66 16 23 C 0.13 3.10 6.53 86.35 0.56 3.67 16 24 H 0.25 1.38 7.80 -4.43 -0.03 1.35 16 25 H 0.09 1.48 7.24 -2.38 -0.02 1.46 16 26 H 0.10 1.67 7.75 -2.39 -0.02 1.65 16 27 H 0.43 5.85 8.63 -96.75 -0.84 5.01 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.11 1.82 7.23 -2.39 -0.02 1.81 16 30 H 0.09 2.05 7.99 -2.39 -0.02 2.03 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 2.45 7.97 -2.38 -0.02 2.44 16 33 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 34 H 0.00 -0.04 6.40 -2.38 -0.02 -0.06 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.26 14.73 8.31 -92.70 -0.77 13.95 16 37 H 0.04 1.12 7.24 -2.38 -0.02 1.11 16 38 H 0.07 2.54 6.16 -2.39 -0.01 2.52 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.11 2.14 7.22 -2.39 -0.02 2.13 16 Total: -1.00 -72.12 344.00 -3.39 -75.51 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.21 Total: 9.54 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 5.77 Total: -13.47 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -6.77 Total: -120.25 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -4.26 Total: -57.58 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 61.26 SS G_CDS: -0.35 Total: 60.91 kcal Total: -72.12 -3.39 -75.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761030720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.139 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds