Wall clock time and date at job start Fri Apr 10 2020 17:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.29014 * 126.43846 * 2 1 4 4 N 1.28746 * 108.80666 * 180.02562 * 3 2 1 5 5 N 1.28841 * 109.39441 * 359.76362 * 4 3 2 6 6 C 1.31066 * 107.99400 * 0.38040 * 5 4 3 7 7 C 1.50696 * 126.65965 * 179.89627 * 6 5 4 8 8 N 1.46507 * 109.47121 * 269.68206 * 7 6 5 9 9 C 1.34773 * 120.00266 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99503 * 359.97438 * 9 8 7 11 11 C 1.50694 * 120.00092 * 180.02562 * 9 8 7 12 12 C 1.50707 * 109.47262 * 179.97438 * 11 9 8 13 13 C 1.37643 * 120.12639 * 265.30991 * 12 11 9 14 14 C 1.38615 * 120.24281 * 180.31829 * 13 12 11 15 15 C 1.38658 * 120.50051 * 359.66907 * 14 13 12 16 16 C 1.37593 * 120.25264 * 0.02562 * 15 14 13 17 17 C 1.40688 * 120.12508 * 84.99750 * 12 11 9 18 18 C 1.41401 * 120.24844 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99289 * 334.28466 * 18 17 12 20 20 C 1.39937 * 120.00394 * 154.28925 * 18 17 12 21 21 N 1.30829 * 120.00181 * 334.60180 * 20 18 17 22 22 Si 1.86801 * 120.00083 * 154.60226 * 20 18 17 23 23 H 1.48505 * 109.47160 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47100 * 300.00105 * 22 20 18 25 25 H 1.48502 * 109.47051 * 60.00179 * 22 20 18 26 26 H 1.08994 * 109.47262 * 269.97804 * 1 2 3 27 27 H 1.09001 * 109.46595 * 29.97673 * 1 2 3 28 28 H 1.09002 * 109.47147 * 149.97249 * 1 2 3 29 29 H 1.09001 * 109.47130 * 149.68667 * 7 6 5 30 30 H 1.08991 * 109.47325 * 29.68511 * 7 6 5 31 31 H 0.97000 * 119.99705 * 0.02562 * 8 7 6 32 32 H 1.09001 * 109.46892 * 59.99768 * 11 9 8 33 33 H 1.08991 * 109.47294 * 299.99778 * 11 9 8 34 34 H 1.07998 * 119.87840 * 0.02562 * 13 12 11 35 35 H 1.07996 * 119.74749 * 179.68975 * 14 13 12 36 36 H 1.08000 * 119.87393 * 180.02562 * 15 14 13 37 37 H 1.07996 * 120.12941 * 180.02562 * 16 15 14 38 38 H 0.96998 * 119.99709 * 354.17607 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0379 0.0000 4 7 3.4583 0.6479 -0.0005 5 7 3.4979 -0.6399 0.0041 6 6 2.2644 -1.0829 -0.0006 7 6 1.8263 -2.5248 0.0000 8 7 1.6831 -2.9922 -1.3810 9 6 1.2971 -4.2599 -1.6268 10 8 1.0688 -5.0138 -0.7047 11 6 1.1504 -4.7409 -3.0474 12 6 0.7121 -6.1828 -3.0469 13 6 1.6464 -7.1889 -3.1444 14 6 1.2454 -8.5157 -3.1508 15 6 -0.0977 -8.8455 -3.0524 16 6 -1.0485 -7.8565 -2.9477 17 6 -0.6530 -6.5058 -2.9401 18 6 -1.6212 -5.4809 -2.8321 19 1 -1.3467 -4.5198 -2.4232 20 6 -2.9350 -5.7120 -3.2551 21 7 -3.1789 -6.6179 -4.1669 22 14 -4.3405 -4.7269 -2.5177 23 1 -5.6225 -5.1587 -3.1305 24 1 -4.3900 -4.9565 -1.0515 25 1 -4.1263 -3.2821 -2.7856 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3632 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5143 29 1 0.8695 -2.6136 0.5147 30 1 2.5725 -3.1311 0.5133 31 1 1.8660 -2.3893 -2.1185 32 1 2.1074 -4.6525 -3.5616 33 1 0.4047 -4.1343 -3.5612 34 1 2.6953 -6.9434 -3.2210 35 1 1.9849 -9.2986 -3.2328 36 1 -0.3988 -9.8827 -3.0580 37 1 -2.0941 -8.1156 -2.8707 38 1 -2.4440 -7.0696 -4.6105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789913017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:21 Heat of formation + Delta-G solvation = 94.382659 kcal Electronic energy + Delta-G solvation = -23669.237502 eV Core-core repulsion = 20128.012026 eV Total energy + Delta-G solvation = -3541.225476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.48816 -39.50082 -37.66282 -36.06317 -35.12996 -33.90379 -32.63059 -31.81074 -29.27252 -29.07933 -27.95390 -26.19824 -24.88696 -23.75078 -22.32601 -21.00153 -20.89597 -19.73478 -17.95104 -17.70049 -17.60353 -16.84492 -16.01702 -15.46913 -14.94540 -14.62776 -14.47210 -14.22130 -14.11170 -14.01821 -13.72134 -13.25801 -12.97175 -12.67779 -12.40843 -12.31876 -12.06698 -11.81690 -11.44228 -11.30196 -11.23144 -11.19985 -10.91369 -10.59588 -10.52625 -10.46312 -9.70555 -9.46011 -9.41344 -9.13056 -9.01632 -7.60504 -7.55816 -7.17761 -4.48315 0.82063 1.64054 1.88491 2.68832 2.80017 3.06658 3.07408 3.21458 3.29209 3.33009 3.63874 3.86437 3.95396 4.42127 4.51725 4.53806 4.84950 4.98381 5.15445 5.22524 5.37937 5.39711 5.60823 5.77489 5.83470 5.94468 6.13917 6.23750 6.31875 6.33572 6.63324 6.95953 7.15865 7.35729 7.52901 7.67851 7.76379 7.80808 7.91326 8.15527 8.29414 8.29490 8.55967 8.72679 8.87500 10.01859 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.004344 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.995804 B = 6444.008106 C = 8012.604452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.298 5.298 3 N -0.092 5.092 4 N -0.077 5.077 5 N -0.286 5.286 6 C 0.170 3.830 7 C 0.205 3.795 8 N -0.744 5.744 9 C 0.521 3.479 10 O -0.512 6.512 11 C -0.067 4.067 12 C -0.188 4.188 13 C -0.067 4.067 14 C -0.251 4.251 15 C -0.085 4.085 16 C -0.216 4.216 17 C 0.117 3.883 18 C -0.518 4.518 19 H 0.071 0.929 20 C 0.040 3.960 21 N -0.798 5.798 22 Si 1.060 2.940 23 H -0.274 1.274 24 H -0.275 1.275 25 H -0.278 1.278 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.399 0.601 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.511 10.937 4.404 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.101 5.101 3 N -0.077 5.077 4 N -0.071 5.071 5 N -0.136 5.136 6 C -0.108 4.108 7 C 0.078 3.922 8 N -0.402 5.402 9 C 0.308 3.692 10 O -0.385 6.385 11 C -0.107 4.107 12 C -0.190 4.190 13 C -0.086 4.086 14 C -0.271 4.271 15 C -0.104 4.104 16 C -0.235 4.235 17 C 0.114 3.886 18 C -0.547 4.547 19 H 0.089 0.911 20 C -0.182 4.182 21 N -0.421 5.421 22 Si 0.884 3.116 23 H -0.198 1.198 24 H -0.200 1.200 25 H -0.204 1.204 26 H 0.120 0.880 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.233 0.767 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.638 11.506 5.050 12.672 hybrid contribution 0.994 -0.419 -0.228 1.102 sum 2.632 11.087 4.822 12.374 Atomic orbital electron populations 1.22565 0.70869 1.07279 1.06170 1.48509 1.11039 1.04175 1.46351 1.78906 0.97995 1.12697 1.18151 1.78668 1.09658 1.03702 1.15040 1.75079 1.17515 1.03506 1.17520 1.26123 0.86852 0.94257 1.03578 1.19550 1.03141 0.82518 0.86950 1.46174 1.73287 1.14403 1.06300 1.21341 0.74906 0.79724 0.93183 1.90716 1.47303 1.54117 1.46329 1.20237 1.01895 0.97103 0.91454 1.18976 0.93948 0.91056 1.14980 1.20381 0.96477 0.93075 0.98640 1.20283 0.95031 0.95012 1.16741 1.20624 0.93471 0.97176 0.99128 1.21146 0.98252 0.92854 1.11231 1.17383 0.91223 0.92298 0.87680 1.20399 0.95372 1.00214 1.38670 0.91102 1.26915 1.00969 0.96482 0.93842 1.70447 1.39342 1.17528 1.14767 0.83713 0.75209 0.75634 0.77044 1.19845 1.20046 1.20357 0.87952 0.87087 0.86981 0.88758 0.87412 0.76675 0.90273 0.88475 0.89483 0.89379 0.89339 0.87738 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 11.09 59.85 0.66 1.04 16 2 N -0.30 -2.89 3.75 -65.03 -0.24 -3.14 16 3 N -0.09 -1.13 13.29 60.35 0.80 -0.33 16 4 N -0.08 -1.10 13.43 60.35 0.81 -0.29 16 5 N -0.29 -3.95 12.36 32.70 0.40 -3.55 16 6 C 0.17 1.89 7.50 -155.43 -1.17 0.73 16 7 C 0.21 2.25 5.81 -5.19 -0.03 2.22 16 8 N -0.74 -9.22 5.55 -61.48 -0.34 -9.56 16 9 C 0.52 8.94 7.46 -10.99 -0.08 8.86 16 10 O -0.51 -11.02 16.03 5.56 0.09 -10.93 16 11 C -0.07 -1.20 5.18 -29.03 -0.15 -1.35 16 12 C -0.19 -4.24 4.43 -103.91 -0.46 -4.70 16 13 C -0.07 -1.48 9.66 -39.66 -0.38 -1.86 16 14 C -0.25 -5.59 10.05 -39.29 -0.39 -5.99 16 15 C -0.09 -1.98 10.02 -39.66 -0.40 -2.38 16 16 C -0.22 -5.45 7.95 -38.87 -0.31 -5.76 16 17 C 0.12 2.94 5.30 -106.82 -0.57 2.37 16 18 C -0.52 -12.73 8.08 -37.74 -0.30 -13.04 16 19 H 0.07 1.66 6.73 -52.49 -0.35 1.31 16 20 C 0.04 0.95 4.94 -17.34 -0.09 0.87 16 21 N -0.80 -20.25 12.31 55.55 0.68 -19.56 16 22 Si 1.06 20.30 30.00 -169.99 -5.10 15.20 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.28 -4.86 7.11 56.52 0.40 -4.46 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.11 0.53 7.75 -51.93 -0.40 0.13 16 29 H 0.09 0.92 7.81 -51.93 -0.41 0.52 16 30 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.40 4.13 8.46 -40.82 -0.35 3.79 16 32 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 33 H 0.10 1.69 7.06 -51.93 -0.37 1.33 16 34 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.10 2.72 6.49 -52.49 -0.34 2.38 16 38 H 0.30 7.83 6.68 -40.82 -0.27 7.56 16 LS Contribution 333.16 15.07 5.02 5.02 Total: -1.00 -31.97 333.16 -5.78 -37.74 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -4.24 Total: 8.39 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -3.67 Total: -18.99 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 2.12 Total: -36.43 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.10 Total: 15.20 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.97 -5.78 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789913017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.126 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds