Wall clock time and date at job start Fri Apr 10 2020 17:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47168 * 320.42717 * 3 2 1 5 5 C 1.38009 * 119.99757 * 180.02562 * 4 3 2 6 6 N 1.32945 * 120.00114 * 359.97247 * 5 4 3 7 7 C 1.32925 * 120.00064 * 180.02562 * 6 5 4 8 8 N 1.38012 * 119.99981 * 179.97438 * 7 6 5 9 9 C 1.46498 * 120.00065 * 0.02562 * 8 7 6 10 10 C 1.50702 * 109.47141 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99939 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00167 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99751 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00170 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47185 * 90.00105 * 14 12 10 16 16 H 1.48509 * 109.47061 * 209.99881 * 14 12 10 17 17 H 1.48495 * 109.46983 * 329.99556 * 14 12 10 18 18 N 1.32952 * 119.99815 * 359.76550 * 7 6 5 19 19 C 1.32920 * 120.00077 * 0.51214 * 18 7 6 20 20 N 1.38009 * 120.00165 * 179.74426 * 19 18 7 21 21 C 1.46499 * 119.99976 * 179.72698 * 20 19 18 22 22 C 1.53000 * 109.46840 * 180.02562 * 21 20 19 23 23 C 1.47205 * 109.46792 * 180.02562 * 22 21 20 24 24 N 9.57290 * 112.38389 * 320.42341 * 2 1 3 25 25 N 1.32923 * 120.00154 * 180.02562 * 5 4 3 26 26 H 4.40639 * 5.51327 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46353 * 200.42095 * 3 2 1 28 28 H 1.09004 * 109.46900 * 80.42671 * 3 2 1 29 29 H 0.96995 * 119.99921 * 359.97438 * 4 3 2 30 30 H 0.97006 * 120.00285 * 179.97438 * 8 7 6 31 31 H 1.09004 * 109.47187 * 299.99345 * 9 8 7 32 32 H 1.08997 * 109.47696 * 59.99560 * 9 8 7 33 33 H 0.97002 * 119.99857 * 180.02562 * 13 12 10 34 34 H 0.97000 * 119.99603 * 359.71929 * 20 19 18 35 35 H 1.09002 * 109.47391 * 59.99673 * 21 20 19 36 36 H 1.09001 * 109.46813 * 299.99730 * 21 20 19 37 37 H 1.09001 * 109.47194 * 299.99493 * 22 21 20 38 38 H 1.08992 * 109.47399 * 59.99666 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.0638 0.8799 5 6 4.4919 -1.2571 1.0409 6 7 5.3554 -0.4779 0.3971 7 6 6.6624 -0.6645 0.5518 8 7 7.5588 0.1442 -0.1169 9 6 7.0699 1.2086 -0.9968 10 6 8.2417 1.9392 -1.6003 11 1 9.2498 1.6409 -1.3528 12 6 8.0269 2.9886 -2.4684 13 7 6.7994 3.3516 -2.7702 14 14 9.4794 3.8948 -3.2159 15 1 9.8656 3.2427 -4.4929 16 1 9.1010 5.3071 -3.4760 17 1 10.6259 3.8551 -2.2731 18 7 7.1060 -1.6274 1.3540 19 6 6.2426 -2.4101 1.9934 20 7 6.7031 -3.4131 2.8220 21 6 5.7515 -4.2719 3.5313 22 6 6.5171 -5.2928 4.3756 23 6 5.5609 -6.1561 5.0878 24 7 4.8195 -6.8226 5.6394 25 7 4.9355 -2.2232 1.8389 26 1 -1.0497 -0.0001 0.0003 27 1 3.0089 0.9639 0.3586 28 1 3.0095 -0.1701 -1.0134 29 1 2.5049 -1.6321 1.3498 30 1 8.5126 0.0083 -0.0038 31 1 6.4643 0.7734 -1.7918 32 1 6.4644 1.9076 -0.4200 33 1 6.6482 4.0897 -3.3813 34 1 7.6569 -3.5495 2.9346 35 1 5.1249 -4.7944 2.8086 36 1 5.1249 -3.6607 4.1808 37 1 7.1441 -5.9040 3.7264 38 1 7.1434 -4.7700 5.0983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804668350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:27 Heat of formation + Delta-G solvation = 164.975850 kcal Electronic energy + Delta-G solvation = -22484.438276 eV Core-core repulsion = 18978.566702 eV Total energy + Delta-G solvation = -3505.871574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78252 -37.72771 -36.85537 -36.41260 -35.01874 -33.38379 -32.89628 -31.73620 -31.19604 -30.23373 -27.14301 -26.77357 -24.50347 -22.84608 -22.71738 -21.60908 -18.95721 -18.53645 -18.10147 -17.52508 -16.47590 -16.06992 -15.91006 -15.43121 -15.36825 -14.83005 -14.70136 -14.57916 -14.29487 -13.63148 -13.53864 -13.37432 -13.20040 -13.15266 -12.91181 -12.70957 -12.03115 -11.93129 -11.91352 -11.36222 -11.06231 -10.94134 -10.73467 -10.63636 -10.27242 -10.26651 -9.41753 -8.93949 -8.73364 -8.69420 -8.50480 -8.18791 -7.50804 -6.19057 -4.24910 1.99911 2.11844 2.22421 2.33289 2.40792 2.75157 2.85171 3.24210 3.30668 3.33127 3.46592 3.75524 3.87396 4.25852 4.34354 4.45256 4.60868 4.72501 4.93797 4.98413 5.09787 5.18017 5.50742 5.58045 5.70777 5.75069 5.87037 6.04787 6.69342 6.81860 7.15905 7.17032 7.22270 7.32033 7.47205 7.50419 7.57479 7.65806 7.92605 7.99390 8.21904 8.55799 8.81543 9.31437 9.42579 10.90924 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.003366 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.594247 B = 8317.170050 C =10690.712388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.196 4.196 3 C 0.247 3.753 4 N -0.692 5.692 5 C 0.649 3.351 6 N -0.661 5.661 7 C 0.646 3.354 8 N -0.661 5.661 9 C 0.264 3.736 10 C -0.544 4.544 11 H 0.064 0.936 12 C 0.066 3.934 13 N -0.885 5.885 14 Si 0.903 3.097 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 N -0.687 5.687 19 C 0.649 3.351 20 N -0.698 5.698 21 C 0.147 3.853 22 C -0.038 4.038 23 C 0.212 3.788 24 N -0.431 5.431 25 N -0.691 5.691 26 H 0.220 0.780 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.412 0.588 30 H 0.407 0.593 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.415 0.585 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.625 -12.011 9.909 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.124 3.876 4 N -0.331 5.331 5 C 0.282 3.718 6 N -0.405 5.405 7 C 0.281 3.719 8 N -0.292 5.292 9 C 0.143 3.857 10 C -0.583 4.583 11 H 0.082 0.918 12 C -0.138 4.138 13 N -0.522 5.522 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.197 1.197 18 N -0.432 5.432 19 C 0.282 3.718 20 N -0.339 5.339 21 C 0.021 3.979 22 C -0.078 4.078 23 C -0.106 4.106 24 N -0.108 5.108 25 N -0.437 5.437 26 H 0.236 0.764 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.249 0.751 30 H 0.244 0.756 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.252 0.748 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.037 -12.563 10.380 17.378 hybrid contribution 1.264 0.514 -0.437 1.433 sum -4.774 -12.049 9.943 16.335 Atomic orbital electron populations 1.24925 0.95854 0.99403 1.00176 1.23103 0.94375 1.01265 1.00865 1.18046 0.82145 0.91672 0.95786 1.43718 1.01439 1.37199 1.50749 1.18485 0.86190 0.83577 0.83522 1.68135 1.02096 1.34952 1.35353 1.18876 0.85156 0.84158 0.83711 1.45092 1.06820 1.32295 1.45017 1.19167 0.95351 0.83230 0.87915 1.21233 0.92684 1.16351 1.28007 0.91836 1.24896 0.96156 0.96683 0.96054 1.69964 1.19498 1.28166 1.34589 0.86418 0.82146 0.78873 0.79508 1.20471 1.21032 1.19730 1.67951 1.38776 1.14566 1.21900 1.18367 0.83949 0.84902 0.84548 1.43559 1.09010 1.33024 1.48267 1.20999 0.91118 0.90848 0.94977 1.19407 0.94486 0.95144 0.98813 1.28882 0.94165 0.93902 0.93699 1.81413 1.09449 1.10191 1.09724 1.67772 1.15309 1.28810 1.31809 0.76363 0.88546 0.88539 0.75078 0.75632 0.95175 0.95180 0.92477 0.74770 0.90660 0.90673 0.86532 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 19.25 29.55 0.57 -1.32 16 2 C -0.20 -2.41 13.46 -37.12 -0.50 -2.91 16 3 C 0.25 3.45 6.16 -6.83 -0.04 3.40 16 4 N -0.69 -9.89 5.67 -65.08 -0.37 -10.26 16 5 C 0.65 11.34 8.47 -322.24 -2.73 8.61 16 6 N -0.66 -13.35 8.92 -14.79 -0.13 -13.48 16 7 C 0.65 13.23 8.48 -322.23 -2.73 10.50 16 8 N -0.66 -14.12 5.68 -63.38 -0.36 -14.48 16 9 C 0.26 6.61 5.44 -5.19 -0.03 6.58 16 10 C -0.54 -14.33 9.28 -34.44 -0.32 -14.64 16 11 H 0.06 1.59 7.60 -52.48 -0.40 1.20 16 12 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.88 -24.92 13.29 55.43 0.74 -24.18 16 14 Si 0.90 20.43 29.54 -169.99 -5.02 15.40 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 N -0.69 -12.37 10.56 -14.79 -0.16 -12.53 16 19 C 0.65 10.10 8.47 -322.24 -2.73 7.36 16 20 N -0.70 -6.98 5.69 -62.20 -0.35 -7.33 16 21 C 0.15 1.07 5.64 -4.04 -0.02 1.05 16 22 C -0.04 -0.14 5.82 -29.52 -0.17 -0.32 16 23 C 0.21 1.59 15.44 -20.65 -0.32 1.27 16 24 N -0.43 -4.77 18.56 42.29 0.78 -3.99 16 25 N -0.69 -11.17 9.74 -14.79 -0.14 -11.31 16 26 H 0.22 1.38 7.80 -54.10 -0.42 0.95 16 27 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.41 5.07 8.57 -40.82 -0.35 4.72 16 30 H 0.41 8.06 8.44 -40.82 -0.34 7.72 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.41 3.21 8.59 -40.82 -0.35 2.86 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -32.87 354.78 -13.17 -46.04 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -4.38 Total: 9.51 kcal Atomic # 6 Polarization: 30.38 SS G_CDS: -9.12 Total: 21.26 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: 0.01 Total: -97.56 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.87 -13.17 -46.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804668350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.018 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds