Wall clock time and date at job start Fri Apr 10 2020 17:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47168 * 320.42717 * 3 2 1 5 5 C 1.38009 * 119.99757 * 180.02562 * 4 3 2 6 6 N 1.32945 * 120.00114 * 359.97247 * 5 4 3 7 7 C 1.32925 * 120.00064 * 180.02562 * 6 5 4 8 8 N 1.38012 * 119.99981 * 179.97438 * 7 6 5 9 9 C 1.46498 * 120.00065 * 0.02562 * 8 7 6 10 10 C 1.50702 * 109.47141 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99939 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00167 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99751 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00170 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47185 * 90.00105 * 14 12 10 16 16 H 1.48509 * 109.47061 * 209.99881 * 14 12 10 17 17 H 1.48495 * 109.46983 * 329.99556 * 14 12 10 18 18 N 1.32952 * 119.99815 * 359.76550 * 7 6 5 19 19 C 1.32920 * 120.00077 * 0.51214 * 18 7 6 20 20 N 1.38009 * 120.00165 * 179.74426 * 19 18 7 21 21 C 1.46499 * 119.99976 * 179.72698 * 20 19 18 22 22 C 1.53000 * 109.46840 * 180.02562 * 21 20 19 23 23 C 1.47205 * 109.46792 * 180.02562 * 22 21 20 24 24 N 9.57290 * 112.38389 * 320.42341 * 2 1 3 25 25 N 1.32923 * 120.00154 * 180.02562 * 5 4 3 26 26 H 4.40639 * 5.51327 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.46353 * 200.42095 * 3 2 1 28 28 H 1.09004 * 109.46900 * 80.42671 * 3 2 1 29 29 H 0.96995 * 119.99921 * 359.97438 * 4 3 2 30 30 H 0.97006 * 120.00285 * 179.97438 * 8 7 6 31 31 H 1.09004 * 109.47187 * 299.99345 * 9 8 7 32 32 H 1.08997 * 109.47696 * 59.99560 * 9 8 7 33 33 H 0.97002 * 119.99857 * 180.02562 * 13 12 10 34 34 H 0.97000 * 119.99603 * 359.71929 * 20 19 18 35 35 H 1.09002 * 109.47391 * 59.99673 * 21 20 19 36 36 H 1.09001 * 109.46813 * 299.99730 * 21 20 19 37 37 H 1.09001 * 109.47194 * 299.99493 * 22 21 20 38 38 H 1.08992 * 109.47399 * 59.99666 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.0638 0.8799 5 6 4.4919 -1.2571 1.0409 6 7 5.3554 -0.4779 0.3971 7 6 6.6624 -0.6645 0.5518 8 7 7.5588 0.1442 -0.1169 9 6 7.0699 1.2086 -0.9968 10 6 8.2417 1.9392 -1.6003 11 1 9.2498 1.6409 -1.3528 12 6 8.0269 2.9886 -2.4684 13 7 6.7994 3.3516 -2.7702 14 14 9.4794 3.8948 -3.2159 15 1 9.8656 3.2427 -4.4929 16 1 9.1010 5.3071 -3.4760 17 1 10.6259 3.8551 -2.2731 18 7 7.1060 -1.6274 1.3540 19 6 6.2426 -2.4101 1.9934 20 7 6.7031 -3.4131 2.8220 21 6 5.7515 -4.2719 3.5313 22 6 6.5171 -5.2928 4.3756 23 6 5.5609 -6.1561 5.0878 24 7 4.8195 -6.8226 5.6394 25 7 4.9355 -2.2232 1.8389 26 1 -1.0497 -0.0001 0.0003 27 1 3.0089 0.9639 0.3586 28 1 3.0095 -0.1701 -1.0134 29 1 2.5049 -1.6321 1.3498 30 1 8.5126 0.0083 -0.0038 31 1 6.4643 0.7734 -1.7918 32 1 6.4644 1.9076 -0.4200 33 1 6.6482 4.0897 -3.3813 34 1 7.6569 -3.5495 2.9346 35 1 5.1249 -4.7944 2.8086 36 1 5.1249 -3.6607 4.1808 37 1 7.1441 -5.9040 3.7264 38 1 7.1434 -4.7700 5.0983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804668350.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:23 Heat of formation + Delta-G solvation = 147.112800 kcal Electronic energy + Delta-G solvation = -22485.212876 eV Core-core repulsion = 18978.566702 eV Total energy + Delta-G solvation = -3506.646174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.135 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -42.14969 -38.57963 -38.11882 -37.50431 -36.29820 -34.85317 -34.27907 -33.05254 -32.52558 -31.20210 -29.02637 -27.93848 -25.61397 -24.37652 -24.07472 -22.99762 -20.18576 -19.77216 -19.23454 -18.46449 -18.06996 -17.02075 -17.00274 -16.82999 -16.50863 -16.31428 -15.93618 -15.76703 -15.50630 -14.98563 -14.74919 -14.73412 -14.26298 -14.23660 -14.10479 -13.99821 -13.58276 -12.87151 -12.84496 -12.80628 -12.49179 -12.42329 -12.16123 -11.86630 -11.65755 -11.41231 -11.28592 -10.67579 -10.32229 -10.18426 -9.65337 -9.39906 -9.19082 -8.23606 -6.37748 0.61169 0.70058 1.22420 1.46718 1.48078 1.55504 1.59498 1.83532 1.83984 1.93846 2.32647 2.39801 2.49676 3.11277 3.15843 3.28296 3.35213 3.71479 3.73713 3.97226 4.24641 4.48624 4.55155 4.61428 4.73190 4.99803 5.01019 5.07571 5.19836 5.39820 5.45784 5.55184 5.73110 5.81229 5.91025 6.02835 6.41167 6.57770 6.60130 6.64854 6.69219 6.84750 7.09263 7.33217 7.91900 8.87683 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.011642 B = 0.003366 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.594247 B = 8317.170050 C =10690.712388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.249 4.249 3 C 0.256 3.744 4 N -0.676 5.676 5 C 0.638 3.362 6 N -0.693 5.693 7 C 0.635 3.365 8 N -0.667 5.667 9 C 0.292 3.708 10 C -0.559 4.559 11 H 0.075 0.925 12 C 0.012 3.988 13 N -0.923 5.923 14 Si 0.977 3.023 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.261 1.261 18 N -0.689 5.689 19 C 0.637 3.363 20 N -0.671 5.671 21 C 0.145 3.855 22 C -0.023 4.023 23 C 0.242 3.758 24 N -0.498 5.498 25 N -0.683 5.683 26 H 0.261 0.739 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.423 0.577 30 H 0.414 0.586 31 H -0.002 1.002 32 H -0.002 1.002 33 H 0.268 0.732 34 H 0.429 0.571 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.149 0.851 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 -12.958 10.694 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.250 4.250 3 C 0.132 3.868 4 N -0.316 5.316 5 C 0.271 3.729 6 N -0.439 5.439 7 C 0.269 3.731 8 N -0.301 5.301 9 C 0.169 3.831 10 C -0.597 4.597 11 H 0.094 0.906 12 C -0.188 4.188 13 N -0.561 5.561 14 Si 0.801 3.199 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.185 1.185 18 N -0.435 5.435 19 C 0.270 3.730 20 N -0.312 5.312 21 C 0.020 3.980 22 C -0.063 4.063 23 C -0.075 4.075 24 N -0.176 5.176 25 N -0.430 5.430 26 H 0.277 0.723 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.262 0.738 30 H 0.251 0.749 31 H 0.016 0.984 32 H 0.015 0.985 33 H 0.077 0.923 34 H 0.269 0.731 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.166 0.834 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.432 -13.609 11.246 18.471 hybrid contribution 0.924 0.703 -0.595 1.304 sum -4.508 -12.907 10.651 17.331 Atomic orbital electron populations 1.25854 0.96486 0.96282 0.97025 1.22915 0.94263 1.04100 1.03712 1.17723 0.83922 0.90616 0.94502 1.43752 1.00552 1.37045 1.50240 1.18805 0.86916 0.83625 0.83535 1.68089 1.02613 1.36440 1.36774 1.18981 0.85211 0.84707 0.84192 1.44674 1.07234 1.32449 1.45713 1.18519 0.94396 0.83222 0.86917 1.21604 0.93383 1.16612 1.28115 0.90645 1.25872 0.99012 0.97533 0.96422 1.70104 1.21854 1.28818 1.35324 0.85272 0.78642 0.77255 0.78751 1.19772 1.20835 1.18487 1.67977 1.39047 1.14467 1.21986 1.18884 0.83662 0.85573 0.84876 1.43651 1.10359 1.31055 1.46144 1.21095 0.91060 0.90986 0.94883 1.19519 0.93431 0.94175 0.99138 1.29411 0.93144 0.92738 0.92227 1.81452 1.11405 1.12596 1.12170 1.67919 1.15609 1.28110 1.31312 0.72313 0.90476 0.90467 0.73812 0.74860 0.98448 0.98454 0.92295 0.73065 0.91352 0.91372 0.83359 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 19.25 74.32 1.43 -1.09 16 2 C -0.25 -6.13 13.46 31.13 0.42 -5.71 16 3 C 0.26 7.65 6.16 84.58 0.52 8.17 16 4 N -0.68 -19.98 5.67 -359.81 -2.04 -22.02 16 5 C 0.64 22.89 8.47 261.29 2.21 25.11 16 6 N -0.69 -29.42 8.92 -200.70 -1.79 -31.21 16 7 C 0.63 26.83 8.48 261.28 2.21 29.04 16 8 N -0.67 -29.62 5.68 -354.44 -2.01 -31.64 16 9 C 0.29 15.42 5.44 85.63 0.47 15.89 16 10 C -0.56 -30.07 9.28 25.60 0.24 -29.83 16 11 H 0.08 3.78 7.60 -2.91 -0.02 3.76 16 12 C 0.01 0.64 5.46 84.65 0.46 1.11 16 13 N -0.92 -53.53 13.29 21.45 0.28 -53.24 16 14 Si 0.98 41.93 29.54 68.60 2.03 43.96 16 15 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 18 N -0.69 -24.67 10.56 -200.70 -2.12 -26.79 16 19 C 0.64 19.14 8.47 261.29 2.21 21.35 16 20 N -0.67 -11.67 5.69 -350.71 -1.99 -13.67 16 21 C 0.15 1.73 5.64 86.38 0.49 2.21 16 22 C -0.02 -0.08 5.82 28.79 0.17 0.08 16 23 C 0.24 3.09 15.44 89.40 1.38 4.47 16 24 N -0.50 -10.62 18.56 20.05 0.37 -10.25 16 25 N -0.68 -21.83 9.74 -200.71 -1.95 -23.78 16 26 H 0.26 2.16 7.80 -4.43 -0.03 2.12 16 27 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.42 10.39 8.57 -92.71 -0.79 9.60 16 30 H 0.41 16.75 8.44 -92.70 -0.78 15.97 16 31 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 32 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.43 5.14 8.59 -92.71 -0.80 4.35 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16 Total: -1.00 -75.59 354.78 1.75 -73.84 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -1.24 Total: 23.99 kcal Atomic # 6 Polarization: 58.58 SS G_CDS: 12.21 Total: 70.79 kcal Atomic # 7 Polarization: -201.33 SS G_CDS: -11.26 Total: -212.59 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -75.59 1.75 -73.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804668350.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.954 kcal (2) G-P(sol) polarization free energy of solvation -75.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds