Wall clock time and date at job start Fri Apr 10 2020 17:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86790 * 120.00549 * 2 1 4 4 H 1.48502 * 109.47272 * 239.99873 * 3 2 1 5 5 H 1.48500 * 109.47080 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47234 * 119.99655 * 3 2 1 7 7 C 1.38814 * 119.99324 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99968 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99821 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46924 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47007 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47243 * 180.02562 * 12 11 10 14 14 C 1.42898 * 114.00180 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47157 * 179.97438 * 14 13 12 16 16 N 1.46493 * 109.47388 * 64.99643 * 15 14 13 17 17 C 1.34781 * 120.00164 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99938 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99936 * 180.02562 * 17 16 15 20 20 H 1.09003 * 110.50612 * 321.29051 * 19 17 16 21 21 C 1.54092 * 110.56524 * 84.19050 * 19 17 16 22 22 O 1.45704 * 104.00994 * 118.57134 * 21 19 17 23 23 C 1.33773 * 109.47307 * 0.02562 * 22 21 19 24 24 O 1.21510 * 123.06598 * 180.26947 * 23 22 21 25 25 N 1.34004 * 113.85828 * 359.97438 * 23 22 21 26 26 H 0.96999 * 119.99493 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99965 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.47144 * 59.99722 * 10 9 7 29 29 H 1.09005 * 109.47104 * 299.99477 * 10 9 7 30 30 H 1.08996 * 109.47338 * 59.99962 * 11 10 9 31 31 H 1.09005 * 109.46902 * 299.99721 * 11 10 9 32 32 H 1.08993 * 109.47787 * 59.99204 * 12 11 10 33 33 H 1.09005 * 109.46916 * 299.99534 * 12 11 10 34 34 H 1.09000 * 109.47292 * 60.00037 * 14 13 12 35 35 H 1.08999 * 109.46907 * 299.99610 * 14 13 12 36 36 H 1.09005 * 109.47150 * 304.99841 * 15 14 13 37 37 H 1.08996 * 109.47043 * 185.00081 * 15 14 13 38 38 H 0.97000 * 120.00047 * 0.02562 * 16 15 14 39 39 H 1.08999 * 110.52576 * 237.20215 * 21 19 17 40 40 H 1.09009 * 110.51923 * 359.80133 * 21 19 17 41 41 H 0.97005 * 125.55711 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2024 0.0001 9 7 1.3253 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0017 11 6 1.0634 -4.8198 0.0021 12 6 1.8283 -6.1448 0.0039 13 8 0.8997 -7.2309 0.0037 14 6 1.5141 -8.5211 0.0047 15 6 0.4311 -9.6018 0.0050 16 7 -0.3265 -9.5343 -1.2470 17 6 -1.3383 -10.3964 -1.4698 18 8 -1.6219 -11.2278 -0.6335 19 6 -2.1172 -10.3273 -2.7580 20 1 -2.2705 -9.2902 -3.0564 21 6 -1.3952 -11.1127 -3.8699 22 8 -2.3437 -12.1558 -4.2378 23 6 -3.4481 -12.0375 -3.4923 24 8 -4.3994 -12.7868 -3.5930 25 7 -3.4070 -11.0209 -2.6202 26 1 -0.4849 0.8401 -0.0004 27 1 0.3553 -2.3880 0.0005 28 1 2.6838 -3.7143 0.8921 29 1 2.6851 -3.7151 -0.8879 30 1 0.4371 -4.7626 -0.8881 31 1 0.4364 -4.7614 0.8918 32 1 2.4544 -6.2018 0.8942 33 1 2.4556 -6.2035 -0.8857 34 1 2.1336 -8.6278 0.8952 35 1 2.1349 -8.6285 -0.8848 36 1 -0.2428 -9.4406 0.8465 37 1 0.8969 -10.5830 0.0954 38 1 -0.1000 -8.8692 -1.9157 39 1 -1.1890 -10.4659 -4.7226 40 1 -0.4714 -11.5498 -3.4908 41 1 -4.1129 -10.7812 -1.9995 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755553136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:30 Heat of formation + Delta-G solvation = -142.030868 kcal Electronic energy + Delta-G solvation = -23419.793425 eV Core-core repulsion = 19528.714619 eV Total energy + Delta-G solvation = -3891.078806 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.152 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.27785 -39.98531 -38.36787 -37.54435 -35.70425 -35.16017 -34.92014 -32.47225 -31.12469 -29.96338 -28.93129 -25.47395 -25.02560 -22.93343 -22.87213 -22.61318 -21.30525 -20.94386 -18.74022 -18.52952 -17.60093 -17.10860 -17.04901 -16.86839 -16.35313 -15.92345 -15.59347 -14.99797 -14.82090 -14.77095 -14.48281 -14.31124 -14.10272 -13.83698 -13.52880 -13.21565 -13.11818 -12.77966 -12.34283 -11.86027 -11.43963 -11.41385 -11.14845 -10.98062 -10.87212 -10.84189 -10.78444 -10.67959 -10.14131 -9.85068 -9.76929 -9.75266 -9.64886 -8.92991 -6.99326 -5.81831 -3.11458 1.81632 2.02002 2.26209 2.53934 3.04335 3.34851 3.40170 3.44700 3.44921 3.45966 3.88522 4.05233 4.40556 4.46675 4.56210 4.64012 4.69911 4.80165 4.97655 5.10825 5.13128 5.24370 5.42492 5.47224 5.51042 5.79804 5.85882 5.97025 6.16693 6.24751 6.26863 6.69377 6.71807 6.76693 6.86298 7.00132 7.53097 7.62609 7.63564 8.36920 9.47826 10.04948 10.39466 11.40957 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.022906 B = 0.001958 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.081804 B =14295.341812 C =15047.241517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.156 3.844 11 C -0.124 4.124 12 C 0.068 3.932 13 O -0.388 6.388 14 C 0.047 3.953 15 C 0.122 3.878 16 N -0.714 5.714 17 C 0.502 3.498 18 O -0.521 6.521 19 C 0.076 3.924 20 H 0.131 0.869 21 C 0.055 3.945 22 O -0.322 6.322 23 C 0.652 3.348 24 O -0.516 6.516 25 N -0.710 5.710 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.409 0.591 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.558 -22.488 -5.834 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.162 4.162 12 C -0.009 4.009 13 O -0.307 6.307 14 C -0.030 4.030 15 C -0.001 4.001 16 N -0.368 5.368 17 C 0.284 3.716 18 O -0.396 6.396 19 C -0.035 4.035 20 H 0.149 0.851 21 C -0.020 4.020 22 O -0.232 6.232 23 C 0.404 3.596 24 O -0.400 6.400 25 N -0.383 5.383 26 H 0.066 0.934 27 H 0.218 0.782 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.244 0.756 39 H 0.141 0.859 40 H 0.128 0.872 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 0.966 -23.562 -5.566 24.230 hybrid contribution 0.434 1.634 0.193 1.702 sum 1.401 -21.927 -5.373 22.620 Atomic orbital electron populations 1.69655 1.05143 1.25884 1.57460 1.24774 0.95574 0.97806 1.02861 0.86232 0.78504 0.83357 0.77865 1.21221 1.21624 1.21217 1.19184 0.91019 0.84112 1.43129 0.91177 1.42326 1.05940 0.99892 1.89585 1.20511 0.93288 0.85475 0.97863 1.21672 0.99436 0.91791 1.03328 1.22524 0.91778 0.86356 1.00195 1.87917 1.34027 1.13303 1.95493 1.22713 0.94845 0.83784 1.01636 1.21482 0.93835 0.98004 0.86813 1.45897 1.33924 1.35742 1.21202 1.20540 0.80911 0.81677 0.88431 1.90793 1.66650 1.36187 1.45930 1.22327 0.85662 1.00789 0.94719 0.85137 1.24248 0.92332 0.88252 0.97181 1.87311 1.26979 1.51143 1.57786 1.18406 0.82526 0.80674 0.77990 1.91107 1.32021 1.45951 1.70915 1.45668 1.18176 1.32501 1.41926 0.93375 0.78186 0.96338 0.96334 0.91195 0.91151 0.93142 0.93194 0.91369 0.92497 0.90105 0.89713 0.75615 0.85929 0.87215 0.71422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -18.30 5.60 -59.90 -0.34 -18.63 16 10 C 0.16 2.97 6.26 -4.04 -0.03 2.94 16 11 C -0.12 -1.86 5.70 -26.73 -0.15 -2.01 16 12 C 0.07 0.75 5.94 37.16 0.22 0.97 16 13 O -0.39 -3.92 10.29 -35.23 -0.36 -4.28 16 14 C 0.05 0.30 6.07 37.16 0.23 0.53 16 15 C 0.12 0.79 6.06 -4.04 -0.02 0.76 16 16 N -0.71 -3.94 5.50 -60.30 -0.33 -4.27 16 17 C 0.50 3.60 6.93 -10.98 -0.08 3.53 16 18 O -0.52 -6.11 16.60 5.56 0.09 -6.01 16 19 C 0.08 0.35 4.17 -68.19 -0.28 0.07 16 20 H 0.13 0.21 8.14 -51.93 -0.42 -0.22 16 21 C 0.06 0.21 7.87 37.73 0.30 0.51 16 22 O -0.32 -2.88 11.09 -37.84 -0.42 -3.30 16 23 C 0.65 7.07 9.16 53.71 0.49 7.56 16 24 O -0.52 -7.75 18.04 -19.12 -0.34 -8.09 16 25 N -0.71 -5.37 5.66 -59.36 -0.34 -5.71 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.38 10.09 7.67 -40.82 -0.31 9.78 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.41 1.40 8.47 -40.82 -0.35 1.05 16 39 H 0.12 0.05 8.14 -51.93 -0.42 -0.38 16 40 H 0.11 0.30 7.72 -51.92 -0.40 -0.10 16 41 H 0.44 2.95 8.96 -40.82 -0.37 2.58 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -37.78 357.04 -6.58 -44.35 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.04 Total: 3.31 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 0.43 Total: 7.48 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.28 Total: -55.82 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -1.03 Total: -21.69 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.78 -6.58 -44.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755553136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.680 kcal (2) G-P(sol) polarization free energy of solvation -37.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds