Wall clock time and date at job start Fri Apr 10 2020 17:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86790 * 120.00549 * 2 1 4 4 H 1.48502 * 109.47272 * 239.99873 * 3 2 1 5 5 H 1.48500 * 109.47080 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47234 * 119.99655 * 3 2 1 7 7 C 1.38814 * 119.99324 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99968 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99821 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46924 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47007 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47243 * 180.02562 * 12 11 10 14 14 C 1.42898 * 114.00180 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47157 * 179.97438 * 14 13 12 16 16 N 1.46493 * 109.47388 * 64.99643 * 15 14 13 17 17 C 1.34781 * 120.00164 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99938 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99936 * 180.02562 * 17 16 15 20 20 H 1.09003 * 110.50612 * 321.29051 * 19 17 16 21 21 C 1.54092 * 110.56524 * 84.19050 * 19 17 16 22 22 O 1.45704 * 104.00994 * 118.57134 * 21 19 17 23 23 C 1.33773 * 109.47307 * 0.02562 * 22 21 19 24 24 O 1.21510 * 123.06598 * 180.26947 * 23 22 21 25 25 N 1.34004 * 113.85828 * 359.97438 * 23 22 21 26 26 H 0.96999 * 119.99493 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99965 * 359.97438 * 9 7 2 28 28 H 1.08996 * 109.47144 * 59.99722 * 10 9 7 29 29 H 1.09005 * 109.47104 * 299.99477 * 10 9 7 30 30 H 1.08996 * 109.47338 * 59.99962 * 11 10 9 31 31 H 1.09005 * 109.46902 * 299.99721 * 11 10 9 32 32 H 1.08993 * 109.47787 * 59.99204 * 12 11 10 33 33 H 1.09005 * 109.46916 * 299.99534 * 12 11 10 34 34 H 1.09000 * 109.47292 * 60.00037 * 14 13 12 35 35 H 1.08999 * 109.46907 * 299.99610 * 14 13 12 36 36 H 1.09005 * 109.47150 * 304.99841 * 15 14 13 37 37 H 1.08996 * 109.47043 * 185.00081 * 15 14 13 38 38 H 0.97000 * 120.00047 * 0.02562 * 16 15 14 39 39 H 1.08999 * 110.52576 * 237.20215 * 21 19 17 40 40 H 1.09009 * 110.51923 * 359.80133 * 21 19 17 41 41 H 0.97005 * 125.55711 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2024 0.0001 9 7 1.3253 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0017 11 6 1.0634 -4.8198 0.0021 12 6 1.8283 -6.1448 0.0039 13 8 0.8997 -7.2309 0.0037 14 6 1.5141 -8.5211 0.0047 15 6 0.4311 -9.6018 0.0050 16 7 -0.3265 -9.5343 -1.2470 17 6 -1.3383 -10.3964 -1.4698 18 8 -1.6219 -11.2278 -0.6335 19 6 -2.1172 -10.3273 -2.7580 20 1 -2.2705 -9.2902 -3.0564 21 6 -1.3952 -11.1127 -3.8699 22 8 -2.3437 -12.1558 -4.2378 23 6 -3.4481 -12.0375 -3.4923 24 8 -4.3994 -12.7868 -3.5930 25 7 -3.4070 -11.0209 -2.6202 26 1 -0.4849 0.8401 -0.0004 27 1 0.3553 -2.3880 0.0005 28 1 2.6838 -3.7143 0.8921 29 1 2.6851 -3.7151 -0.8879 30 1 0.4371 -4.7626 -0.8881 31 1 0.4364 -4.7614 0.8918 32 1 2.4544 -6.2018 0.8942 33 1 2.4556 -6.2035 -0.8857 34 1 2.1336 -8.6278 0.8952 35 1 2.1349 -8.6285 -0.8848 36 1 -0.2428 -9.4406 0.8465 37 1 0.8969 -10.5830 0.0954 38 1 -0.1000 -8.8692 -1.9157 39 1 -1.1890 -10.4659 -4.7226 40 1 -0.4714 -11.5498 -3.4908 41 1 -4.1129 -10.7812 -1.9995 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755553136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:29 Heat of formation + Delta-G solvation = -175.229413 kcal Electronic energy + Delta-G solvation = -23421.233022 eV Core-core repulsion = 19528.714619 eV Total energy + Delta-G solvation = -3892.518403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.152 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.89122 -40.62172 -39.12930 -38.37568 -37.03495 -35.97558 -35.71381 -34.11034 -32.01360 -31.19356 -29.68116 -26.80553 -25.76522 -24.25821 -23.56509 -23.45161 -22.28195 -21.86384 -19.36885 -19.15548 -19.02079 -18.21005 -17.77907 -17.53255 -17.05108 -16.77581 -16.54192 -16.23644 -15.69032 -15.55576 -15.34230 -15.23693 -15.16182 -14.90378 -14.60879 -14.40580 -14.07626 -13.36001 -13.27282 -13.13050 -12.75287 -12.58350 -12.41951 -12.08217 -12.06598 -12.02688 -11.92010 -11.90101 -11.73709 -11.55068 -10.92177 -10.54131 -10.37656 -10.20589 -9.01152 -7.95448 -5.25075 1.24668 1.40061 1.48765 1.51905 1.58158 1.59974 2.00146 2.51344 2.57117 2.68512 3.08041 3.38359 3.42727 3.75654 3.87292 4.05197 4.08755 4.13088 4.24181 4.39895 4.43469 4.45675 4.47505 4.57359 4.66169 4.77244 4.80677 4.84677 4.91545 5.30516 5.36363 5.37411 5.49942 5.61363 6.05423 6.25219 6.29547 6.40018 6.86620 7.07212 7.32862 8.09252 8.31083 9.28076 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.022906 B = 0.001958 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.081804 B =14295.341812 C =15047.241517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.079 0.921 9 N -0.750 5.750 10 C 0.153 3.847 11 C -0.114 4.114 12 C 0.079 3.921 13 O -0.405 6.405 14 C 0.048 3.952 15 C 0.122 3.878 16 N -0.701 5.701 17 C 0.502 3.498 18 O -0.573 6.573 19 C 0.079 3.921 20 H 0.173 0.827 21 C 0.052 3.948 22 O -0.338 6.338 23 C 0.649 3.351 24 O -0.572 6.572 25 N -0.704 5.704 26 H 0.252 0.748 27 H 0.373 0.627 28 H 0.023 0.977 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.422 0.578 39 H 0.167 0.833 40 H 0.121 0.879 41 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.934 -22.136 -6.730 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.097 0.903 9 N -0.393 5.393 10 C 0.027 3.973 11 C -0.152 4.152 12 C 0.002 3.998 13 O -0.325 6.325 14 C -0.028 4.028 15 C -0.001 4.001 16 N -0.354 5.354 17 C 0.286 3.714 18 O -0.452 6.452 19 C -0.030 4.030 20 H 0.190 0.810 21 C -0.022 4.022 22 O -0.248 6.248 23 C 0.402 3.598 24 O -0.460 6.460 25 N -0.375 5.375 26 H 0.060 0.940 27 H 0.205 0.795 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.260 0.740 39 H 0.184 0.816 40 H 0.140 0.860 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 3.437 -23.191 -6.473 24.322 hybrid contribution -0.194 1.483 0.504 1.579 sum 3.243 -21.708 -5.969 22.746 Atomic orbital electron populations 1.69818 1.06702 1.26250 1.59359 1.25640 0.96466 1.01357 1.03620 0.85165 0.77159 0.78848 0.78304 1.20100 1.22267 1.20344 1.19640 0.91643 0.85310 1.41458 0.90327 1.42605 1.05738 1.01402 1.89564 1.20696 0.93942 0.84516 0.98155 1.21475 0.98549 0.92821 1.02322 1.22291 0.91155 0.84748 1.01594 1.87870 1.34555 1.14378 1.95734 1.22873 0.94823 0.81709 1.03388 1.21447 0.93592 0.98634 0.86448 1.45823 1.33108 1.35371 1.21104 1.20951 0.80850 0.80896 0.88665 1.90783 1.68143 1.38370 1.47864 1.22643 0.83909 1.02779 0.93647 0.81025 1.24764 0.91297 0.87668 0.98466 1.87270 1.27027 1.52974 1.57535 1.18559 0.82409 0.80577 0.78299 1.91048 1.34257 1.48024 1.72684 1.45697 1.19280 1.31693 1.40871 0.93954 0.79513 0.95949 0.95259 0.91666 0.92756 0.92384 0.91139 0.90384 0.89918 0.92370 0.88738 0.74010 0.81572 0.86048 0.71210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 3 Si 0.98 44.97 29.55 68.60 2.03 47.00 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.25 -13.60 9.99 84.03 0.84 -12.76 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.75 -37.22 5.60 -343.44 -1.92 -39.14 16 10 C 0.15 5.58 6.26 86.38 0.54 6.12 16 11 C -0.11 -3.23 5.70 30.59 0.17 -3.05 16 12 C 0.08 1.50 5.94 71.98 0.43 1.93 16 13 O -0.41 -7.04 10.29 -148.98 -1.53 -8.58 16 14 C 0.05 0.46 6.07 71.98 0.44 0.90 16 15 C 0.12 1.33 6.06 86.38 0.52 1.86 16 16 N -0.70 -5.92 5.50 -463.06 -2.55 -8.47 16 17 C 0.50 6.35 6.93 87.66 0.61 6.96 16 18 O -0.57 -13.31 16.60 -3.03 -0.05 -13.36 16 19 C 0.08 0.55 4.17 44.50 0.19 0.73 16 20 H 0.17 -0.18 8.14 -2.39 -0.02 -0.19 16 21 C 0.05 0.24 7.87 72.35 0.57 0.81 16 22 O -0.34 -5.72 11.09 -47.33 -0.52 -6.25 16 23 C 0.65 14.22 9.16 129.91 1.19 15.41 16 24 O -0.57 -18.08 18.04 19.65 0.35 -17.73 16 25 N -0.70 -10.22 5.66 -573.42 -3.24 -13.46 16 26 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 27 H 0.37 19.82 7.67 -92.71 -0.71 19.11 16 28 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.42 1.32 8.47 -92.71 -0.79 0.53 16 39 H 0.17 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.12 0.29 7.72 -2.38 -0.02 0.27 16 41 H 0.44 5.93 8.96 -92.70 -0.83 5.10 16 Total: -1.00 -84.70 357.04 -2.45 -87.15 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -1.25 Total: 16.36 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 5.96 Total: 14.92 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -7.43 Total: -119.53 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.75 Total: -45.91 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -84.70 -2.45 -87.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755553136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.076 kcal (2) G-P(sol) polarization free energy of solvation -84.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds