Wall clock time and date at job start Fri Apr 10 2020 17:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99611 * 3 2 1 5 5 H 1.48498 * 109.47093 * 30.00442 * 3 2 1 6 6 H 1.48508 * 109.46865 * 150.00102 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21280 * 120.00276 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00045 * 179.97438 * 13 12 11 16 16 C 1.52585 * 109.24170 * 300.55735 * 15 13 12 17 17 C 1.53053 * 109.97811 * 169.67568 * 16 15 13 18 18 S 1.81666 * 108.97003 * 63.70680 * 17 16 15 19 19 O 1.42104 * 108.66586 * 191.35434 * 18 17 16 20 20 O 1.42104 * 108.74826 * 60.04233 * 18 17 16 21 21 C 1.81675 * 101.30465 * 305.68395 * 18 17 16 22 22 C 1.52587 * 109.24625 * 179.44492 * 15 13 12 23 23 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 24 24 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 26 26 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 27 27 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 28 28 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 29 29 H 1.08997 * 109.23869 * 60.00215 * 15 13 12 30 30 H 1.08997 * 109.39006 * 289.86844 * 16 15 13 31 31 H 1.09003 * 109.38839 * 49.56032 * 16 15 13 32 32 H 1.09002 * 109.58201 * 303.85140 * 17 16 15 33 33 H 1.09002 * 109.63214 * 183.59050 * 17 16 15 34 34 H 1.08997 * 109.55030 * 294.43683 * 21 18 17 35 35 H 1.09008 * 109.62608 * 174.19996 * 21 18 17 36 36 H 1.09005 * 109.38225 * 310.44561 * 22 15 13 37 37 H 1.09000 * 109.38885 * 70.22449 * 22 15 13 38 38 H 1.08999 * 113.77157 * 90.38334 * 23 9 7 39 39 H 1.09002 * 113.84143 * 318.91597 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4599 -5.3193 2.2106 15 6 -0.5738 -4.6857 4.3040 16 6 0.7398 -5.2808 4.8026 17 6 0.8891 -5.0330 6.3056 18 16 -0.4378 -5.9100 7.1833 19 8 -0.4573 -5.4704 8.5345 20 8 -0.3285 -7.2994 6.9056 21 6 -1.9111 -5.2628 6.3400 22 6 -1.7607 -5.4853 4.8334 23 6 -0.1058 -2.7570 0.0001 24 1 -0.4850 0.8401 -0.0004 25 1 2.5619 -4.0327 0.6538 26 1 1.8325 -4.2346 -0.9996 27 1 -0.1594 -4.9598 0.2327 28 1 1.0580 -3.5720 2.5714 29 1 -0.6539 -3.6542 4.6469 30 1 0.7474 -6.3535 4.6098 31 1 1.5718 -4.8140 4.2752 32 1 0.8165 -3.9645 6.5086 33 1 1.8569 -5.4035 6.6435 34 1 -2.0088 -4.1965 6.5434 35 1 -2.7977 -5.7854 6.6992 36 1 -2.6700 -5.1609 4.3273 37 1 -1.5978 -6.5456 4.6402 38 1 -0.5312 -2.8713 -0.9969 39 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031041797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:52 Heat of formation + Delta-G solvation = -54.985432 kcal Electronic energy + Delta-G solvation = -23087.827627 eV Core-core repulsion = 19545.557603 eV Total energy + Delta-G solvation = -3542.270024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.113 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.11181 -38.02814 -37.27398 -36.31609 -36.22731 -33.46488 -32.19971 -31.75524 -28.75799 -27.36930 -24.90723 -23.94177 -23.44970 -22.08475 -20.05290 -19.37763 -19.09815 -17.43626 -17.01741 -16.74803 -16.61115 -15.95938 -15.72655 -15.08069 -14.79791 -14.46759 -14.29786 -13.91711 -13.70158 -13.41780 -13.13550 -13.00110 -12.64992 -12.38827 -12.33227 -12.24770 -12.11615 -11.78355 -11.64492 -11.31959 -11.30360 -10.97490 -10.94259 -10.64111 -10.34926 -10.30231 -9.91557 -9.64182 -9.58620 -8.92258 -8.50248 -6.99401 -5.85215 -3.19222 -0.25469 2.37788 2.77410 3.26681 3.31963 3.36927 3.38315 3.39057 3.74034 4.13289 4.23131 4.32036 4.36534 4.50323 4.60331 4.81221 4.94331 5.01529 5.07823 5.22161 5.31132 5.39755 5.47089 5.49082 5.56968 5.77122 5.92657 6.02453 6.15909 6.31229 6.43177 6.72244 7.13265 7.24283 7.50432 7.84749 7.90442 8.47961 8.94784 9.61590 10.48963 11.30954 Molecular weight = 302.11amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.003529 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.837597 B = 7932.235495 C = 8489.988811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.611 5.611 10 C 0.110 3.890 11 C 0.088 3.912 12 N -0.690 5.690 13 C 0.521 3.479 14 O -0.544 6.544 15 C -0.130 4.130 16 C -0.105 4.105 17 C -0.601 4.601 18 S 2.414 3.586 19 O -0.947 6.947 20 O -0.936 6.936 21 C -0.601 4.601 22 C -0.092 4.092 23 C 0.151 3.849 24 H 0.254 0.746 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.404 0.596 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -10.495 12.442 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.018 4.018 12 N -0.339 5.339 13 C 0.307 3.693 14 O -0.422 6.422 15 C -0.151 4.151 16 C -0.143 4.143 17 C -0.730 4.730 18 S 2.596 3.404 19 O -0.944 6.944 20 O -0.933 6.933 21 C -0.730 4.730 22 C -0.131 4.131 23 C 0.024 3.976 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.239 0.761 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.072 -11.187 12.721 16.974 hybrid contribution 0.787 2.072 -0.594 2.294 sum -0.285 -9.116 12.127 15.173 Atomic orbital electron populations 1.69825 1.05022 1.25407 1.56254 1.24780 0.95615 0.97502 1.02290 0.86155 0.78595 0.83504 0.77667 1.21586 1.21648 1.20631 1.19010 0.90224 0.82008 1.44296 0.90289 1.46175 1.02234 0.99136 1.86315 1.22916 0.94390 0.86935 0.97374 1.22893 0.99100 1.00267 0.79496 1.45536 1.29503 1.51760 1.07072 1.20050 0.81731 0.78973 0.88595 1.90690 1.36485 1.43893 1.71120 1.21526 0.96036 1.03074 0.94504 1.21300 0.97758 1.03653 0.91604 1.30221 1.19267 1.15367 1.08190 1.08160 0.79414 0.76699 0.76128 1.93595 1.86032 1.83481 1.31273 1.93595 1.85442 1.28356 1.85926 1.30239 1.20683 1.13679 1.08441 1.21091 0.99887 1.02071 0.90022 1.22739 0.88204 0.89388 0.97230 0.93594 0.93484 0.93561 0.89171 0.76107 0.87131 0.88899 0.88585 0.84450 0.84353 0.84694 0.84442 0.88102 0.89034 0.94673 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.26 11.39 55.49 0.63 -25.63 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.23 -6.02 10.70 -15.06 -0.16 -6.18 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.61 -14.53 3.70 -177.88 -0.66 -15.19 16 10 C 0.11 2.05 8.68 -2.96 -0.03 2.02 16 11 C 0.09 1.59 4.40 -70.15 -0.31 1.28 16 12 N -0.69 -10.57 5.18 -55.34 -0.29 -10.86 16 13 C 0.52 7.52 7.14 -10.99 -0.08 7.44 16 14 O -0.54 -9.68 15.40 5.56 0.09 -9.59 16 15 C -0.13 -1.27 2.27 -92.20 -0.21 -1.48 16 16 C -0.10 -0.82 4.99 -26.92 -0.13 -0.96 16 17 C -0.60 -3.70 6.35 37.18 0.24 -3.46 16 18 S 2.41 19.75 5.30 -107.50 -0.57 19.18 16 19 O -0.95 -10.94 18.10 -57.82 -1.05 -11.99 16 20 O -0.94 -10.93 17.95 -57.82 -1.04 -11.96 16 21 C -0.60 -4.02 6.35 37.17 0.24 -3.78 16 22 C -0.09 -0.85 4.46 -26.93 -0.12 -0.97 16 23 C 0.15 3.41 7.32 -2.85 -0.02 3.39 16 24 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.58 7.51 -51.93 -0.39 1.19 16 28 H 0.40 5.70 8.01 -40.82 -0.33 5.37 16 29 H 0.11 0.89 8.09 -51.93 -0.42 0.47 16 30 H 0.09 0.74 8.01 -51.93 -0.42 0.32 16 31 H 0.10 0.71 7.22 -51.93 -0.38 0.33 16 32 H 0.14 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.14 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.14 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.10 1.03 7.73 -51.93 -0.40 0.63 16 37 H 0.09 0.87 8.01 -51.93 -0.42 0.45 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.95 7.16 -51.93 -0.37 1.58 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -36.47 330.96 -9.22 -45.70 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.62 Total: 2.07 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.68 Total: -2.93 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.31 Total: -51.67 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -2.00 Total: -33.55 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 19.75 SS G_CDS: -0.57 Total: 19.18 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.47 -9.22 -45.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031041797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.287 kcal (2) G-P(sol) polarization free energy of solvation -36.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds