Wall clock time and date at job start Fri Apr 10 2020 17:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99611 * 3 2 1 5 5 H 1.48498 * 109.47093 * 30.00442 * 3 2 1 6 6 H 1.48508 * 109.46865 * 150.00102 * 3 2 1 7 7 C 1.38807 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49091 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11527 * 155.35578 * 10 9 7 12 12 N 1.46503 * 113.74313 * 269.15304 * 11 10 9 13 13 C 1.34768 * 120.00164 * 203.07427 * 12 11 10 14 14 O 1.21280 * 120.00276 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00045 * 179.97438 * 13 12 11 16 16 C 1.52585 * 109.24170 * 300.55735 * 15 13 12 17 17 C 1.53053 * 109.97811 * 169.67568 * 16 15 13 18 18 S 1.81666 * 108.97003 * 63.70680 * 17 16 15 19 19 O 1.42104 * 108.66586 * 191.35434 * 18 17 16 20 20 O 1.42104 * 108.74826 * 60.04233 * 18 17 16 21 21 C 1.81675 * 101.30465 * 305.68395 * 18 17 16 22 22 C 1.52587 * 109.24625 * 179.44492 * 15 13 12 23 23 C 1.47805 * 134.45487 * 359.86555 * 9 7 2 24 24 H 0.97002 * 120.00155 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.77186 * 41.05536 * 10 9 7 26 26 H 1.09004 * 113.76624 * 269.65013 * 10 9 7 27 27 H 1.09002 * 113.74276 * 137.95197 * 11 10 9 28 28 H 0.97006 * 119.99523 * 23.07305 * 12 11 10 29 29 H 1.08997 * 109.23869 * 60.00215 * 15 13 12 30 30 H 1.08997 * 109.39006 * 289.86844 * 16 15 13 31 31 H 1.09003 * 109.38839 * 49.56032 * 16 15 13 32 32 H 1.09002 * 109.58201 * 303.85140 * 17 16 15 33 33 H 1.09002 * 109.63214 * 183.59050 * 17 16 15 34 34 H 1.08997 * 109.55030 * 294.43683 * 21 18 17 35 35 H 1.09008 * 109.62608 * 174.19996 * 21 18 17 36 36 H 1.09005 * 109.38225 * 310.44561 * 22 15 13 37 37 H 1.09000 * 109.38885 * 70.22449 * 22 15 13 38 38 H 1.08999 * 113.77157 * 90.38334 * 23 9 7 39 39 H 1.09002 * 113.84143 * 318.91597 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7201 -3.8102 -0.0019 11 6 0.3465 -4.0832 0.6374 12 7 0.3621 -4.0583 2.1021 13 6 -0.5902 -4.7109 2.7974 14 8 -1.4599 -5.3193 2.2106 15 6 -0.5738 -4.6857 4.3040 16 6 0.7398 -5.2808 4.8026 17 6 0.8891 -5.0330 6.3056 18 16 -0.4378 -5.9100 7.1833 19 8 -0.4573 -5.4704 8.5345 20 8 -0.3285 -7.2994 6.9056 21 6 -1.9111 -5.2628 6.3400 22 6 -1.7607 -5.4853 4.8334 23 6 -0.1058 -2.7570 0.0001 24 1 -0.4850 0.8401 -0.0004 25 1 2.5619 -4.0327 0.6538 26 1 1.8325 -4.2346 -0.9996 27 1 -0.1594 -4.9598 0.2327 28 1 1.0580 -3.5720 2.5714 29 1 -0.6539 -3.6542 4.6469 30 1 0.7474 -6.3535 4.6098 31 1 1.5718 -4.8140 4.2752 32 1 0.8165 -3.9645 6.5086 33 1 1.8569 -5.4035 6.6435 34 1 -2.0088 -4.1965 6.5434 35 1 -2.7977 -5.7854 6.6992 36 1 -2.6700 -5.1609 4.3273 37 1 -1.5978 -6.5456 4.6402 38 1 -0.5312 -2.8713 -0.9969 39 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031041797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:51 Heat of formation + Delta-G solvation = -84.036341 kcal Electronic energy + Delta-G solvation = -23089.087369 eV Core-core repulsion = 19545.557603 eV Total energy + Delta-G solvation = -3543.529766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.113 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.29239 -39.45787 -38.10772 -37.19376 -37.01295 -34.96617 -33.71302 -32.66237 -29.90616 -28.84490 -26.57078 -25.15284 -24.48986 -23.18808 -21.08629 -20.91667 -19.76510 -18.74932 -18.34584 -17.76464 -17.25965 -17.01819 -16.89986 -16.66351 -15.92060 -15.63316 -15.50802 -15.08392 -14.72448 -14.48752 -14.39983 -14.00999 -13.80100 -13.32333 -13.23709 -13.18232 -13.15325 -13.02709 -12.79537 -12.75958 -12.40563 -12.34833 -12.10138 -12.01749 -11.71840 -11.63236 -11.36928 -10.99077 -10.92138 -10.74200 -9.90327 -8.92178 -7.87764 -5.22048 -0.87516 1.47827 1.49421 1.57518 1.64254 1.79442 2.18125 2.48550 2.76917 3.02817 3.29164 3.43159 3.45748 3.58365 3.69372 3.73337 3.89870 4.06516 4.14471 4.24801 4.38712 4.51416 4.62033 4.64982 4.71947 4.82292 4.90047 4.91963 4.97178 5.11500 5.15290 5.20515 5.28842 5.51845 5.75664 5.93483 6.66746 6.92460 7.30735 7.63182 8.56887 9.28310 Molecular weight = 302.11amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.003529 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.837597 B = 7932.235495 C = 8489.988811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.064 4.064 3 Si 0.974 3.026 4 H -0.293 1.293 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.230 4.230 8 H 0.088 0.912 9 N -0.634 5.634 10 C 0.118 3.882 11 C 0.113 3.887 12 N -0.688 5.688 13 C 0.519 3.481 14 O -0.581 6.581 15 C -0.124 4.124 16 C -0.107 4.107 17 C -0.584 4.584 18 S 2.420 3.580 19 O -0.983 6.983 20 O -0.978 6.978 21 C -0.589 4.589 22 C -0.095 4.095 23 C 0.144 3.856 24 H 0.246 0.754 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.412 0.588 29 H 0.136 0.864 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.018 0.982 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -10.361 13.551 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.257 4.257 3 Si 0.803 3.197 4 H -0.221 1.221 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.358 4.358 8 H 0.106 0.894 9 N -0.361 5.361 10 C -0.007 4.007 11 C 0.006 3.994 12 N -0.338 5.338 13 C 0.306 3.694 14 O -0.461 6.461 15 C -0.145 4.145 16 C -0.145 4.145 17 C -0.715 4.715 18 S 2.607 3.393 19 O -0.980 6.980 20 O -0.975 6.975 21 C -0.719 4.719 22 C -0.134 4.134 23 C 0.017 3.983 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.248 0.752 29 H 0.153 0.847 30 H 0.108 0.892 31 H 0.126 0.874 32 H 0.183 0.817 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.168 0.832 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.036 0.964 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.636 -11.107 13.873 17.783 hybrid contribution 0.253 1.989 -1.021 2.250 sum 0.889 -9.118 12.852 15.783 Atomic orbital electron populations 1.70025 1.06519 1.25396 1.58314 1.25552 0.96329 1.00682 1.03140 0.85144 0.77913 0.79462 0.77176 1.22066 1.22458 1.18811 1.19430 0.90881 0.83152 1.42336 0.89417 1.46456 1.02852 1.00566 1.86252 1.23065 0.95401 0.83692 0.98586 1.22474 0.98211 0.97616 0.81092 1.45512 1.30199 1.52164 1.05924 1.20875 0.80417 0.77543 0.90529 1.90676 1.37742 1.45286 1.72394 1.21595 0.97408 1.04884 0.90660 1.21333 0.96843 1.03576 0.92772 1.30087 1.18698 1.16681 1.06072 1.07741 0.80140 0.75896 0.75557 1.93550 1.86839 1.83773 1.33879 1.93541 1.86287 1.31349 1.86364 1.30136 1.20259 1.15519 1.06031 1.21068 0.99194 1.01571 0.91529 1.22669 0.87662 0.91721 0.96256 0.94509 0.90880 0.92184 0.88488 0.75150 0.84650 0.89175 0.87352 0.81669 0.82405 0.82043 0.83189 0.89299 0.89851 0.96408 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.59 11.39 21.65 0.25 -55.34 16 2 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 3 Si 0.97 43.48 29.55 68.60 2.03 45.50 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.23 -11.91 10.70 84.03 0.90 -11.01 16 8 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -29.64 3.70 -716.70 -2.65 -32.29 16 10 C 0.12 4.10 8.68 86.49 0.75 4.85 16 11 C 0.11 3.93 4.40 46.74 0.21 4.14 16 12 N -0.69 -19.93 5.18 -447.41 -2.32 -22.25 16 13 C 0.52 14.24 7.14 87.66 0.63 14.87 16 14 O -0.58 -20.47 15.40 -3.03 -0.05 -20.51 16 15 C -0.12 -2.12 2.27 -11.82 -0.03 -2.15 16 16 C -0.11 -1.35 4.99 30.47 0.15 -1.20 16 17 C -0.58 -5.09 6.35 72.00 0.46 -4.64 16 18 S 2.42 35.40 5.30 -56.49 -0.30 35.10 16 19 O -0.98 -21.39 18.10 -127.39 -2.31 -23.69 16 20 O -0.98 -22.25 17.95 -127.39 -2.29 -24.54 16 21 C -0.59 -6.54 6.35 71.99 0.46 -6.08 16 22 C -0.09 -1.60 4.46 30.47 0.14 -1.46 16 23 C 0.14 6.60 7.32 86.44 0.63 7.24 16 24 H 0.25 14.10 8.31 -92.71 -0.77 13.32 16 25 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.10 3.30 7.51 -2.39 -0.02 3.28 16 28 H 0.41 10.59 8.01 -92.70 -0.74 9.85 16 29 H 0.14 1.68 8.09 -2.39 -0.02 1.66 16 30 H 0.09 1.23 8.01 -2.39 -0.02 1.21 16 31 H 0.11 1.18 7.22 -2.39 -0.02 1.16 16 32 H 0.17 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.15 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.09 1.74 7.73 -2.38 -0.02 1.73 16 37 H 0.08 1.53 8.01 -2.39 -0.02 1.51 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.04 2.26 7.16 -2.39 -0.02 2.24 16 Total: -1.00 -80.37 330.96 -2.56 -82.92 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.32 Total: 13.52 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 4.76 Total: 1.58 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -4.72 Total: -109.88 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -4.64 Total: -68.75 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 35.40 SS G_CDS: -0.30 Total: 35.10 kcal Total: -80.37 -2.56 -82.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031041797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.113 kcal (2) G-P(sol) polarization free energy of solvation -80.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds