Wall clock time and date at job start Fri Apr 10 2020 17:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 110.36310 * 2 1 4 4 O 1.21281 * 119.99589 * 122.16456 * 3 2 1 5 5 N 1.34771 * 120.00133 * 302.16814 * 3 2 1 6 6 C 1.46497 * 119.99950 * 180.02562 * 5 3 2 7 7 C 1.53950 * 113.74072 * 251.67072 * 6 5 3 8 8 N 1.47571 * 86.11897 * 222.04810 * 7 6 5 9 9 C 1.36942 * 134.49500 * 204.64413 * 8 7 6 10 10 H 1.08003 * 120.00251 * 173.48080 * 9 8 7 11 11 C 1.38813 * 119.99679 * 353.48014 * 9 8 7 12 12 N 1.31619 * 119.99957 * 5.06697 * 11 9 8 13 13 Si 1.86801 * 119.99818 * 185.06745 * 11 9 8 14 14 H 1.48499 * 109.46998 * 94.98767 * 13 11 9 15 15 H 1.48505 * 109.46941 * 214.98469 * 13 11 9 16 16 H 1.48502 * 109.47027 * 334.98610 * 13 11 9 17 17 C 1.47580 * 91.01669 * 24.63948 * 8 7 6 18 18 C 1.54161 * 110.31807 * 237.83121 * 2 1 3 19 19 C 1.53877 * 108.70537 * 269.00934 * 18 2 1 20 20 C 1.55415 * 106.73984 * 312.90838 * 19 18 2 21 21 S 1.82914 * 110.31551 * 122.17101 * 2 1 3 22 22 O 1.42105 * 109.35086 * 230.17844 * 21 2 1 23 23 O 1.42098 * 109.35701 * 3.24564 * 21 2 1 24 24 H 1.08996 * 109.47617 * 297.83257 * 1 2 3 25 25 H 1.09005 * 109.46844 * 57.83070 * 1 2 3 26 26 H 1.08999 * 109.47307 * 177.82943 * 1 2 3 27 27 H 0.97005 * 120.00122 * 359.97438 * 5 3 2 28 28 H 1.08999 * 112.94856 * 23.40429 * 6 5 3 29 29 H 1.09000 * 113.76949 * 336.34912 * 7 6 5 30 30 H 1.09007 * 113.76663 * 107.74354 * 7 6 5 31 31 H 0.96999 * 119.99700 * 180.02562 * 12 11 9 32 32 H 1.09001 * 113.77370 * 221.06188 * 17 8 7 33 33 H 1.09007 * 113.87216 * 89.67396 * 17 8 7 34 34 H 1.08993 * 109.64992 * 28.85906 * 18 2 1 35 35 H 1.08996 * 109.64661 * 149.29035 * 18 2 1 36 36 H 1.08998 * 110.02939 * 72.11067 * 19 18 2 37 37 H 1.09002 * 110.02941 * 193.53066 * 19 18 2 38 38 H 1.08997 * 110.75743 * 284.07824 * 20 19 18 39 39 H 1.09000 * 110.95556 * 160.51576 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0544 1.4128 0.0000 4 8 2.7896 1.7867 0.8892 5 7 1.7063 2.2608 -0.9880 6 6 2.2166 3.6341 -0.9882 7 6 1.1499 4.6917 -0.6510 8 7 1.7469 5.4944 -1.7358 9 6 1.7978 6.8323 -2.0234 10 1 2.4009 7.1851 -2.8469 11 6 1.0742 7.7350 -1.2563 12 7 0.4194 7.3187 -0.1932 13 14 1.0298 9.5407 -1.7330 14 1 -0.1810 9.8072 -2.5503 15 1 0.9923 10.3758 -0.5056 16 1 2.2429 9.8743 -2.5219 17 6 2.2673 4.2762 -2.3864 18 6 2.0653 -0.7697 -1.2238 19 6 2.2603 -2.2450 -0.8322 20 6 3.0111 -2.2515 0.5285 21 16 2.1651 -0.9133 1.4520 22 8 3.1338 -0.1181 2.1217 23 8 1.0734 -1.4602 2.1788 24 1 -0.3634 0.4798 0.9087 25 1 -0.3633 0.5472 -0.8699 26 1 -0.3634 -1.0269 -0.0389 27 1 1.1186 1.9617 -1.6993 28 1 3.1408 3.7442 -0.4210 29 1 0.1295 4.3672 -0.8550 30 1 1.2671 5.1339 0.3385 31 1 -0.0865 7.9495 0.3426 32 1 3.2767 4.3867 -2.7828 33 1 1.5765 3.8283 -3.1009 34 1 1.3495 -0.6995 -2.0427 35 1 3.0202 -0.3458 -1.5344 36 1 1.2920 -2.7336 -0.7239 37 1 2.8546 -2.7568 -1.5892 38 1 4.0665 -2.0176 0.3885 39 1 2.8898 -3.2084 1.0361 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031083203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:55 Heat of formation + Delta-G solvation = -41.982247 kcal Electronic energy + Delta-G solvation = -23437.674045 eV Core-core repulsion = 19895.967881 eV Total energy + Delta-G solvation = -3541.706164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.113 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.04274 -37.85843 -37.27003 -36.52023 -35.88867 -33.65627 -32.44162 -31.58440 -27.50389 -27.24756 -25.06667 -24.88350 -23.18548 -21.93844 -20.52307 -19.78636 -18.67071 -17.47626 -16.89444 -16.73872 -16.20031 -15.82451 -15.27916 -15.10052 -14.77282 -14.61303 -14.08912 -13.90637 -13.83322 -13.19262 -13.05813 -12.78412 -12.57837 -12.24029 -12.20528 -11.99558 -11.90239 -11.78805 -11.52261 -11.49198 -11.34272 -10.91119 -10.86148 -10.80486 -10.51524 -10.37734 -10.07197 -9.60094 -9.51516 -8.83949 -8.52437 -6.95483 -5.82481 -3.15991 -0.15399 2.39391 2.62203 3.10783 3.37563 3.42320 3.45174 3.48136 3.85518 4.07923 4.22102 4.28466 4.39329 4.46845 4.57704 4.70732 5.06999 5.10855 5.14240 5.25014 5.33290 5.36241 5.41601 5.46108 5.52417 5.53554 5.82326 5.95107 6.14161 6.34766 6.48928 6.66740 7.19228 7.27181 7.50755 7.71302 7.92143 8.35139 8.98706 9.64952 10.51402 11.34716 Molecular weight = 302.11amu Principal moments of inertia in cm(-1) A = 0.034605 B = 0.003408 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.926543 B = 8213.213365 C = 8452.589319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.562 4.562 3 C 0.533 3.467 4 O -0.501 6.501 5 N -0.702 5.702 6 C 0.089 3.911 7 C 0.156 3.844 8 N -0.605 5.605 9 C -0.229 4.229 10 H 0.082 0.918 11 C -0.004 4.004 12 N -0.916 5.916 13 Si 0.913 3.087 14 H -0.288 1.288 15 H -0.289 1.289 16 H -0.279 1.279 17 C 0.113 3.887 18 C -0.105 4.105 19 C -0.117 4.117 20 C -0.598 4.598 21 S 2.408 3.592 22 O -0.888 6.888 23 O -0.931 6.931 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.397 0.603 28 H 0.114 0.886 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.256 0.744 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -22.865 -3.817 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.653 4.653 3 C 0.315 3.685 4 O -0.375 6.375 5 N -0.353 5.353 6 C -0.016 4.016 7 C 0.030 3.970 8 N -0.332 5.332 9 C -0.356 4.356 10 H 0.100 0.900 11 C -0.201 4.201 12 N -0.562 5.562 13 Si 0.743 3.257 14 H -0.216 1.216 15 H -0.216 1.216 16 H -0.205 1.205 17 C -0.014 4.014 18 C -0.144 4.144 19 C -0.155 4.155 20 C -0.727 4.727 21 S 2.586 3.414 22 O -0.885 6.885 23 O -0.928 6.928 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.231 0.769 28 H 0.132 0.868 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.157 0.843 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.078 -22.018 -2.154 22.220 hybrid contribution -0.493 0.658 -1.596 1.795 sum 1.585 -21.360 -3.750 21.744 Atomic orbital electron populations 1.21548 0.87278 1.04276 1.04809 1.30525 1.08185 1.06079 1.20481 1.19132 0.81452 0.84587 0.83356 1.91004 1.35179 1.76558 1.34808 1.46020 1.50108 1.12802 1.26351 1.24064 1.00539 0.77699 0.99297 1.22628 0.92921 0.86365 0.95106 1.45638 1.62871 0.99969 1.24724 1.18982 1.23833 0.79627 1.13199 0.89975 1.24858 0.99183 0.98379 0.97683 1.69845 1.35730 1.33850 1.16727 0.86092 0.77743 0.84406 0.77472 1.21564 1.21583 1.20451 1.22872 0.97644 0.87804 0.93106 1.22068 1.03497 0.92999 0.95794 1.22241 1.01283 0.96684 0.95324 1.30821 1.12590 1.18746 1.10584 1.09065 0.77085 0.77896 0.77392 1.93722 1.59482 1.65959 1.69368 1.93599 1.53781 1.78287 1.67154 0.90542 0.90091 0.90087 0.76894 0.86766 0.95167 0.90772 0.93444 0.93236 0.94791 0.88129 0.89220 0.89341 0.88282 0.84330 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 7.77 37.16 0.29 -0.78 16 2 C -0.56 -5.75 0.93 -91.16 -0.08 -5.84 16 3 C 0.53 7.97 6.41 -10.99 -0.07 7.89 16 4 O -0.50 -9.94 13.57 -18.57 -0.25 -10.20 16 5 N -0.70 -10.09 5.23 -55.34 -0.29 -10.38 16 6 C 0.09 1.67 4.43 -70.14 -0.31 1.36 16 7 C 0.16 3.69 7.23 -2.98 -0.02 3.66 16 8 N -0.61 -15.32 3.70 -178.08 -0.66 -15.98 16 9 C -0.23 -6.38 10.70 -15.06 -0.16 -6.55 16 10 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 11 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 12 N -0.92 -27.33 11.51 55.49 0.64 -26.69 16 13 Si 0.91 22.05 29.56 -169.99 -5.02 17.02 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 C 0.11 2.17 8.69 -2.98 -0.03 2.15 16 18 C -0.11 -0.65 5.44 -25.67 -0.14 -0.79 16 19 C -0.12 -0.55 6.48 -24.99 -0.16 -0.71 16 20 C -0.60 -3.84 7.34 38.44 0.28 -3.56 16 21 S 2.41 27.91 5.76 -107.50 -0.62 27.29 16 22 O -0.89 -14.90 15.27 -67.18 -1.03 -15.93 16 23 O -0.93 -12.62 17.26 -57.73 -1.00 -13.62 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.60 7.46 -51.93 -0.39 0.21 16 26 H 0.08 0.53 8.13 -51.93 -0.42 0.10 16 27 H 0.40 4.41 8.05 -40.82 -0.33 4.08 16 28 H 0.11 2.36 7.46 -51.93 -0.39 1.98 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 2.01 7.35 -51.92 -0.38 1.62 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.03 0.60 8.12 -51.92 -0.42 0.17 16 34 H 0.10 0.42 7.88 -51.93 -0.41 0.01 16 35 H 0.09 0.58 7.85 -51.93 -0.41 0.17 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.14 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -38.13 329.54 -9.41 -47.55 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.65 Total: -0.67 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.50 Total: -3.35 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.31 Total: -53.05 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -2.27 Total: -39.74 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 27.91 SS G_CDS: -0.62 Total: 27.29 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -38.13 -9.41 -47.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031083203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.564 kcal (2) G-P(sol) polarization free energy of solvation -38.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds