Wall clock time and date at job start Fri Apr 10 2020 17:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00195 * 2 1 4 4 H 1.48499 * 109.46751 * 269.99699 * 3 2 1 5 5 H 1.48494 * 109.47090 * 29.99420 * 3 2 1 6 6 H 1.48494 * 109.46992 * 149.99540 * 3 2 1 7 7 C 1.38810 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00112 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.47588 * 134.48991 * 359.97438 * 9 7 2 11 11 C 1.53951 * 86.11268 * 155.35994 * 10 9 7 12 12 C 1.47577 * 134.49312 * 179.97438 * 9 7 2 13 13 H 1.09003 * 113.86851 * 90.32914 * 12 9 7 14 14 C 1.52999 * 113.77070 * 318.94606 * 12 9 7 15 15 N 1.46497 * 109.46992 * 78.50383 * 14 12 9 16 16 C 1.34777 * 119.99525 * 179.97438 * 15 14 12 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 14 19 19 H 1.08995 * 110.28669 * 38.16479 * 18 16 15 20 20 C 1.54170 * 110.31733 * 275.93859 * 18 16 15 21 21 C 1.53882 * 108.70397 * 213.18888 * 20 18 16 22 22 C 1.55045 * 106.62242 * 47.18023 * 21 20 18 23 23 S 1.82915 * 110.32058 * 160.28002 * 18 16 15 24 24 O 1.42100 * 109.35388 * 234.42536 * 23 18 16 25 25 O 1.42107 * 109.35300 * 7.49060 * 23 18 16 26 26 H 0.97001 * 119.99741 * 0.02562 * 1 2 3 27 27 H 1.08997 * 113.76619 * 41.05772 * 10 9 7 28 28 H 1.09000 * 113.76620 * 269.65860 * 10 9 7 29 29 H 1.09002 * 113.73961 * 269.25585 * 11 10 9 30 30 H 1.09000 * 113.83693 * 137.96997 * 11 10 9 31 31 H 1.08995 * 109.46838 * 318.50270 * 14 12 9 32 32 H 1.09001 * 109.46617 * 198.50605 * 14 12 9 33 33 H 0.97000 * 120.00580 * 0.02562 * 15 14 12 34 34 H 1.08997 * 109.64625 * 333.04247 * 20 18 16 35 35 H 1.08998 * 109.64483 * 93.34106 * 20 18 16 36 36 H 1.09001 * 110.02628 * 287.89173 * 21 20 18 37 37 H 1.08996 * 110.06927 * 166.49739 * 21 20 18 38 38 H 1.08997 * 110.78947 * 199.29722 * 22 21 20 39 39 H 1.09003 * 110.78579 * 75.84026 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1035 -2.7573 0.0005 11 6 0.3469 -4.0829 -0.6398 12 6 1.7200 -3.8101 0.0005 13 1 1.8324 -4.2367 0.9973 14 6 2.9023 -4.1221 -0.9191 15 7 4.1495 -3.7189 -0.2648 16 6 5.3286 -3.9000 -0.8921 17 8 5.3571 -4.3963 -1.9984 18 6 6.6111 -3.4796 -0.2216 19 1 6.5667 -3.6928 0.8464 20 6 6.8726 -1.9790 -0.4597 21 6 8.3917 -1.7515 -0.5520 22 6 8.9454 -2.8367 -1.5110 23 16 8.0363 -4.3377 -0.9820 24 8 8.7781 -5.0055 0.0294 25 8 7.5977 -5.0545 -2.1280 26 1 -0.4850 0.8401 -0.0004 27 1 -0.7169 -2.1390 -0.6547 28 1 -0.5273 -2.8730 0.9981 29 1 0.3589 -4.0621 -1.7296 30 1 -0.1586 -4.9607 -0.2373 31 1 2.7892 -3.5745 -1.8546 32 1 2.9296 -5.1921 -1.1254 33 1 4.1268 -3.3224 0.6202 34 1 6.3982 -1.6674 -1.3903 35 1 6.4651 -1.4000 0.3689 36 1 8.8456 -1.8574 0.4334 37 1 8.5976 -0.7589 -0.9527 38 1 10.0187 -2.9652 -1.3714 39 1 8.7156 -2.5904 -2.5477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039038534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:01 Heat of formation + Delta-G solvation = -46.835703 kcal Electronic energy + Delta-G solvation = -23394.508872 eV Core-core repulsion = 19852.592247 eV Total energy + Delta-G solvation = -3541.916625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.113 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.72997 -38.03413 -37.09269 -36.36773 -35.85312 -34.16669 -32.25867 -30.77557 -28.05750 -27.60674 -25.75571 -23.42959 -22.39873 -21.83050 -20.58166 -19.27724 -18.79485 -17.65198 -17.14625 -16.65775 -16.30532 -15.62019 -15.37315 -15.22154 -14.82923 -14.47047 -14.20538 -14.03512 -13.77141 -13.35556 -13.14454 -12.75756 -12.37278 -12.23577 -12.11183 -11.99034 -11.82368 -11.48693 -11.37547 -11.17128 -11.08049 -10.84534 -10.82137 -10.61022 -10.44884 -10.09839 -9.82308 -9.75599 -9.40817 -8.87027 -8.69363 -6.96088 -5.83225 -3.15862 -0.13700 2.37062 2.63687 3.16208 3.30234 3.33287 3.38007 3.51896 3.94569 4.16571 4.34272 4.36926 4.42548 4.57645 4.70494 4.90621 5.07326 5.20045 5.28406 5.33184 5.48245 5.56943 5.60019 5.63964 5.73532 5.85952 6.03374 6.25863 6.36031 6.56912 6.63352 6.77509 7.18484 7.35516 7.53139 7.68050 7.91519 8.33801 8.96903 9.64055 10.53011 11.33518 Molecular weight = 302.11amu Principal moments of inertia in cm(-1) A = 0.017337 B = 0.004743 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.678983 B = 5902.281469 C = 7182.881245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.125 3.875 13 H 0.050 0.950 14 C 0.121 3.879 15 N -0.703 5.703 16 C 0.528 3.472 17 O -0.509 6.509 18 C -0.597 4.597 19 H 0.157 0.843 20 C -0.105 4.105 21 C -0.118 4.118 22 C -0.591 4.591 23 S 2.407 3.593 24 O -0.939 6.939 25 O -0.893 6.893 26 H 0.253 0.747 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.404 0.596 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.951 -5.064 0.809 14.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.194 4.194 12 C 0.017 3.983 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.353 5.353 16 C 0.310 3.690 17 O -0.385 6.385 18 C -0.706 4.706 19 H 0.175 0.825 20 C -0.144 4.144 21 C -0.157 4.157 22 C -0.721 4.721 23 S 2.586 3.414 24 O -0.936 6.936 25 O -0.890 6.890 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.239 0.761 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.155 0.845 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.153 -6.026 -0.074 15.382 hybrid contribution 0.237 2.156 0.874 2.338 sum 14.389 -3.870 0.800 14.922 Atomic orbital electron populations 1.69814 1.04970 1.25282 1.56442 1.24766 0.95618 0.97396 1.02583 0.86207 0.78526 0.83882 0.77596 1.21592 1.21669 1.20830 1.18918 0.90092 0.81928 1.43865 0.90405 1.46075 1.02326 0.98524 1.85966 1.22204 0.87899 0.89633 0.96913 1.23773 0.96029 0.98997 1.00635 1.22516 0.92361 0.87708 0.95669 0.93253 1.21864 0.81940 0.99069 0.97487 1.45902 1.05692 1.62340 1.21388 1.19096 0.84005 0.79835 0.86105 1.90946 1.86410 1.43042 1.18107 1.30755 1.14663 1.11027 1.14158 0.82539 1.21925 0.96209 0.90127 1.06100 1.22211 0.93969 1.00261 0.99216 1.30690 1.12917 1.18574 1.09906 1.08903 0.77670 0.78148 0.76703 1.93611 1.69302 1.70904 1.59762 1.93710 1.79466 1.68055 1.47769 0.93641 0.90792 0.95552 0.90443 0.92743 0.90613 0.91789 0.76136 0.88938 0.87967 0.89318 0.88074 0.84525 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.22 11.38 55.49 0.63 -25.59 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.22 -5.65 10.51 -15.06 -0.16 -5.81 16 8 H 0.08 1.87 7.80 -52.48 -0.41 1.47 16 9 N -0.60 -14.11 3.57 -170.74 -0.61 -14.72 16 10 C 0.16 3.54 7.52 -2.97 -0.02 3.51 16 11 C -0.16 -2.75 7.86 -25.80 -0.20 -2.96 16 12 C 0.13 2.31 4.33 -66.87 -0.29 2.02 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.12 2.10 5.54 -4.04 -0.02 2.08 16 15 N -0.70 -11.10 5.53 -60.30 -0.33 -11.43 16 16 C 0.53 8.27 6.91 -10.98 -0.08 8.20 16 17 O -0.51 -9.87 14.22 -18.21 -0.26 -10.12 16 18 C -0.60 -6.65 3.61 -27.27 -0.10 -6.75 16 19 H 0.16 1.31 8.14 -51.93 -0.42 0.88 16 20 C -0.10 -0.99 5.93 -25.66 -0.15 -1.14 16 21 C -0.12 -0.81 6.48 -25.19 -0.16 -0.98 16 22 C -0.59 -4.46 7.31 38.24 0.28 -4.18 16 23 S 2.41 28.01 5.92 -107.50 -0.64 27.37 16 24 O -0.94 -12.85 18.15 -57.73 -1.05 -13.90 16 25 O -0.89 -14.61 15.41 -67.05 -1.03 -15.64 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.07 1.84 7.15 -51.93 -0.37 1.47 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.40 5.85 8.47 -40.82 -0.35 5.50 16 34 H 0.09 0.98 7.85 -51.93 -0.41 0.58 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.14 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -36.09 333.79 -10.02 -46.11 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.74 Total: 3.15 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -1.00 Total: -6.29 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.31 Total: -51.74 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -2.34 Total: -39.66 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 28.01 SS G_CDS: -0.64 Total: 27.37 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.09 -10.02 -46.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039038534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.727 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds