Wall clock time and date at job start Fri Apr 10 2020 17:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46646 * 2 1 4 4 C 1.50698 * 109.47264 * 239.99528 * 2 1 3 5 5 H 1.07995 * 120.00013 * 240.00015 * 4 2 1 6 6 C 1.37881 * 120.00032 * 60.00145 * 4 2 1 7 7 N 1.31520 * 119.99608 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00187 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47186 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47149 * 299.99906 * 8 6 4 11 11 H 1.48501 * 109.47134 * 59.99704 * 8 6 4 12 12 N 1.46507 * 109.46911 * 119.99673 * 2 1 3 13 13 C 1.34778 * 119.99496 * 275.00180 * 12 2 1 14 14 O 1.21358 * 120.00471 * 359.97438 * 13 12 2 15 15 C 1.49344 * 119.99388 * 180.02562 * 13 12 2 16 16 O 1.21382 * 120.00198 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99979 * 179.97438 * 15 13 12 18 18 C 1.39886 * 120.00117 * 174.71754 * 17 15 13 19 19 C 1.39599 * 119.84505 * 326.31542 * 18 17 15 20 20 C 1.36456 * 120.75141 * 179.69154 * 19 18 17 21 21 C 1.39315 * 120.09263 * 0.59643 * 20 19 18 22 22 N 1.37180 * 133.66356 * 179.71133 * 21 20 19 23 23 H 0.97003 * 125.45956 * 359.97438 * 22 21 20 24 24 N 1.39854 * 109.07441 * 179.97438 * 22 21 20 25 25 C 1.30247 * 110.09443 * 359.97438 * 24 22 21 26 26 C 1.40794 * 119.64295 * 359.68080 * 21 20 19 27 27 C 1.38110 * 119.83844 * 146.58050 * 18 17 15 28 28 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47305 * 300.00531 * 1 2 3 30 30 H 1.09000 * 109.46978 * 60.00742 * 1 2 3 31 31 H 0.97000 * 119.99269 * 180.02562 * 7 6 4 32 32 H 0.96992 * 119.99792 * 95.00162 * 12 2 1 33 33 H 0.97001 * 119.99968 * 354.72421 * 17 15 13 34 34 H 1.08000 * 119.61998 * 359.97418 * 19 18 17 35 35 H 1.07994 * 119.95142 * 180.25770 * 20 19 18 36 36 H 1.07993 * 126.10360 * 179.97438 * 25 24 22 37 37 H 1.07996 * 120.26733 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8270 -0.4202 -5.2204 10 1 3.8064 -1.1212 -4.0080 11 1 1.8259 -2.5205 -4.0075 12 7 2.0183 -0.6906 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8587 1.1595 2.4115 15 6 2.6452 -0.7219 3.5765 16 8 2.9339 -1.8996 3.5221 17 7 2.7744 -0.0494 4.7373 18 6 3.1347 -0.7313 5.9043 19 6 2.7036 -2.0441 6.1031 20 6 3.0493 -2.7287 7.2318 21 6 3.8308 -2.1157 8.2087 22 7 4.3260 -2.5258 9.4205 23 1 4.1884 -3.3998 9.8180 24 7 5.0611 -1.4816 9.9908 25 6 5.0518 -0.4450 9.2023 26 6 4.2666 -0.7900 8.0214 27 6 3.9107 -0.1006 6.8570 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 0.7082 1.1606 -3.4845 32 1 2.2490 -1.6317 1.1527 33 1 2.6174 0.9075 4.7635 34 1 2.0932 -2.5248 5.3530 35 1 2.7121 -3.7452 7.3703 36 1 5.5376 0.5012 9.3894 37 1 4.2405 0.9164 6.7041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122970795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:56 Heat of formation + Delta-G solvation = 20.807719 kcal Electronic energy + Delta-G solvation = -23070.098374 eV Core-core repulsion = 19427.963788 eV Total energy + Delta-G solvation = -3642.134587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.55377 -40.48252 -38.52098 -37.14974 -35.23047 -34.27417 -32.53681 -32.37182 -30.16370 -29.31175 -28.75843 -25.37559 -24.79951 -23.47157 -22.31625 -21.90378 -20.69100 -19.69270 -18.73079 -18.05761 -17.64193 -16.46122 -16.07145 -15.86220 -15.26602 -15.17873 -15.01803 -14.74533 -14.40686 -14.08676 -13.83542 -13.52866 -13.32663 -13.14227 -12.51022 -12.33019 -11.82917 -11.55002 -11.28914 -11.19571 -11.14578 -11.01875 -10.83702 -10.71232 -10.39797 -10.29437 -10.01093 -9.19683 -9.13384 -8.83193 -8.64505 -8.16904 -7.84265 -6.19463 -4.29233 0.66613 1.06204 1.86859 2.23538 2.39952 2.67137 3.24037 3.28948 3.31111 3.45843 3.72276 4.03070 4.29886 4.31399 4.37921 4.55991 4.93949 5.00322 5.05275 5.13587 5.22132 5.43148 5.64744 5.91475 6.02918 6.12697 6.16744 6.63891 6.69384 6.81766 6.98945 7.00001 7.06583 7.18995 7.28386 7.37782 7.59412 7.74986 7.88572 8.02718 8.40471 8.58024 8.82168 9.37857 10.86516 Molecular weight = 302.12amu Principal moments of inertia in cm(-1) A = 0.038239 B = 0.002560 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.056668 B =10936.404092 C =11182.219470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.668 5.668 13 C 0.495 3.505 14 O -0.535 6.535 15 C 0.508 3.492 16 O -0.507 6.507 17 N -0.649 5.649 18 C 0.117 3.883 19 C -0.063 4.063 20 C -0.124 4.124 21 C 0.116 3.884 22 N -0.512 5.512 23 H 0.439 0.561 24 N -0.252 5.252 25 C 0.077 3.923 26 C -0.162 4.162 27 C -0.069 4.069 28 H 0.030 0.970 29 H 0.016 0.984 30 H 0.094 0.906 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.423 0.577 34 H 0.144 0.856 35 H 0.131 0.869 36 H 0.198 0.802 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 -3.790 20.602 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.200 1.200 12 N -0.316 5.316 13 C 0.273 3.727 14 O -0.413 6.413 15 C 0.291 3.709 16 O -0.381 6.381 17 N -0.296 5.296 18 C 0.022 3.978 19 C -0.086 4.086 20 C -0.146 4.146 21 C 0.000 4.000 22 N -0.228 5.228 23 H 0.283 0.717 24 N -0.066 5.066 25 C -0.121 4.121 26 C -0.171 4.171 27 C -0.093 4.093 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.261 0.739 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.214 0.786 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.607 -4.138 21.453 22.329 hybrid contribution -0.007 -0.603 -1.383 1.509 sum 4.600 -4.741 20.070 21.129 Atomic orbital electron populations 1.22104 0.97812 0.99570 1.01245 1.18979 0.91455 0.94137 0.79309 0.92770 1.21153 1.32896 1.13522 0.90032 0.91785 1.24877 0.94674 0.94929 0.99094 1.69884 1.35583 1.22356 1.24209 0.86447 0.79231 0.79612 0.81488 1.21079 1.20082 1.20042 1.46510 1.61276 1.14561 1.09295 1.19656 0.81228 0.87307 0.84523 1.90733 1.50830 1.15179 1.84606 1.20955 0.77897 0.87252 0.84756 1.90735 1.46693 1.15756 1.84891 1.43185 1.67344 1.13155 1.05964 1.17422 0.99383 0.93431 0.87577 1.20792 0.98020 0.93275 0.96476 1.19660 1.01450 1.00613 0.92921 1.18851 0.98008 0.94598 0.88513 1.45922 1.46666 1.14608 1.15584 0.71666 1.76532 1.12297 0.96212 1.21522 1.25077 0.98408 0.98152 0.90511 1.19590 1.05796 0.94283 0.97409 1.20265 0.96350 1.00418 0.92230 0.95093 0.96442 0.88703 0.92372 0.76316 0.73876 0.83786 0.85134 0.78557 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 2 C 0.26 6.44 2.56 -69.08 -0.18 6.27 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.12 11.32 55.43 0.63 -23.49 16 8 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16 9 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 12 N -0.67 -13.87 5.06 -55.40 -0.28 -14.15 16 13 C 0.49 9.51 7.85 -11.63 -0.09 9.42 16 14 O -0.53 -11.36 16.15 5.49 0.09 -11.28 16 15 C 0.51 8.18 7.61 -11.63 -0.09 8.09 16 16 O -0.51 -8.73 14.16 5.47 0.08 -8.65 16 17 N -0.65 -8.37 5.32 -10.29 -0.05 -8.43 16 18 C 0.12 1.40 6.26 -83.72 -0.52 0.88 16 19 C -0.06 -0.76 8.57 -39.72 -0.34 -1.10 16 20 C -0.12 -1.25 10.01 -39.82 -0.40 -1.65 16 21 C 0.12 1.20 7.33 -84.11 -0.62 0.59 16 22 N -0.51 -4.69 7.37 32.39 0.24 -4.45 16 23 H 0.44 2.73 8.96 -182.78 -1.64 1.09 16 24 N -0.25 -2.55 12.55 31.87 0.40 -2.15 16 25 C 0.08 0.67 12.28 -15.14 -0.19 0.48 16 26 C -0.16 -1.67 6.36 -105.21 -0.67 -2.34 16 27 C -0.07 -0.70 10.02 -39.00 -0.39 -1.09 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.40 7.77 8.01 -40.82 -0.33 7.44 16 33 H 0.42 4.79 8.29 -40.82 -0.34 4.45 16 34 H 0.14 1.83 6.41 -52.49 -0.34 1.50 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -31.02 326.76 -7.54 -38.56 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.00 Total: 10.05 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -3.53 Total: 3.77 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.93 Total: -52.67 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.17 Total: -19.93 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.02 -7.54 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122970795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.364 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds