Wall clock time and date at job start Fri Apr 10 2020 17:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46646 * 2 1 4 4 C 1.50698 * 109.47264 * 239.99528 * 2 1 3 5 5 H 1.07995 * 120.00013 * 240.00015 * 4 2 1 6 6 C 1.37881 * 120.00032 * 60.00145 * 4 2 1 7 7 N 1.31520 * 119.99608 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00187 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47186 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47149 * 299.99906 * 8 6 4 11 11 H 1.48501 * 109.47134 * 59.99704 * 8 6 4 12 12 N 1.46507 * 109.46911 * 119.99673 * 2 1 3 13 13 C 1.34778 * 119.99496 * 275.00180 * 12 2 1 14 14 O 1.21358 * 120.00471 * 359.97438 * 13 12 2 15 15 C 1.49344 * 119.99388 * 180.02562 * 13 12 2 16 16 O 1.21382 * 120.00198 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99979 * 179.97438 * 15 13 12 18 18 C 1.39886 * 120.00117 * 174.71754 * 17 15 13 19 19 C 1.39599 * 119.84505 * 326.31542 * 18 17 15 20 20 C 1.36456 * 120.75141 * 179.69154 * 19 18 17 21 21 C 1.39315 * 120.09263 * 0.59643 * 20 19 18 22 22 N 1.37180 * 133.66356 * 179.71133 * 21 20 19 23 23 H 0.97003 * 125.45956 * 359.97438 * 22 21 20 24 24 N 1.39854 * 109.07441 * 179.97438 * 22 21 20 25 25 C 1.30247 * 110.09443 * 359.97438 * 24 22 21 26 26 C 1.40794 * 119.64295 * 359.68080 * 21 20 19 27 27 C 1.38110 * 119.83844 * 146.58050 * 18 17 15 28 28 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47305 * 300.00531 * 1 2 3 30 30 H 1.09000 * 109.46978 * 60.00742 * 1 2 3 31 31 H 0.97000 * 119.99269 * 180.02562 * 7 6 4 32 32 H 0.96992 * 119.99792 * 95.00162 * 12 2 1 33 33 H 0.97001 * 119.99968 * 354.72421 * 17 15 13 34 34 H 1.08000 * 119.61998 * 359.97418 * 19 18 17 35 35 H 1.07994 * 119.95142 * 180.25770 * 20 19 18 36 36 H 1.07993 * 126.10360 * 179.97438 * 25 24 22 37 37 H 1.07996 * 120.26733 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8270 -0.4202 -5.2204 10 1 3.8064 -1.1212 -4.0080 11 1 1.8259 -2.5205 -4.0075 12 7 2.0183 -0.6906 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8587 1.1595 2.4115 15 6 2.6452 -0.7219 3.5765 16 8 2.9339 -1.8996 3.5221 17 7 2.7744 -0.0494 4.7373 18 6 3.1347 -0.7313 5.9043 19 6 2.7036 -2.0441 6.1031 20 6 3.0493 -2.7287 7.2318 21 6 3.8308 -2.1157 8.2087 22 7 4.3260 -2.5258 9.4205 23 1 4.1884 -3.3998 9.8180 24 7 5.0611 -1.4816 9.9908 25 6 5.0518 -0.4450 9.2023 26 6 4.2666 -0.7900 8.0214 27 6 3.9107 -0.1006 6.8570 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 0.7082 1.1606 -3.4845 32 1 2.2490 -1.6317 1.1527 33 1 2.6174 0.9075 4.7635 34 1 2.0932 -2.5248 5.3530 35 1 2.7121 -3.7452 7.3703 36 1 5.5376 0.5012 9.3894 37 1 4.2405 0.9164 6.7041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122970795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:55 Heat of formation + Delta-G solvation = -1.788991 kcal Electronic energy + Delta-G solvation = -23071.078241 eV Core-core repulsion = 19427.963788 eV Total energy + Delta-G solvation = -3643.114453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.117 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.39582 -41.70585 -39.94357 -38.19412 -36.95723 -35.41503 -34.30750 -33.23764 -31.12315 -30.91586 -29.75119 -27.36492 -26.16656 -24.29114 -23.45547 -22.78996 -22.04637 -21.20716 -20.15798 -18.85807 -18.66643 -18.14116 -17.41956 -17.18399 -16.95395 -16.36082 -16.02269 -15.82492 -15.53993 -15.11533 -15.01561 -14.78588 -14.51798 -14.41155 -14.09072 -13.73272 -13.25587 -13.06133 -12.89092 -12.79956 -12.62956 -12.29250 -12.26756 -12.13684 -11.94073 -11.54651 -11.15731 -10.91376 -10.67708 -10.57695 -9.96381 -9.65803 -8.68775 -8.19175 -6.36351 -0.11824 0.03927 0.65739 1.32772 1.47565 1.48307 1.53102 1.56554 1.78500 2.15978 2.40205 2.74308 2.76889 3.11689 3.50019 3.55835 3.73532 3.83344 4.14340 4.24549 4.35541 4.71612 4.74852 4.88153 4.90347 5.03219 5.05136 5.14004 5.30369 5.32591 5.42485 5.45541 5.60587 5.74070 5.80984 6.04961 6.05413 6.33742 6.56974 6.60557 6.66323 6.81786 7.09459 7.35990 8.86685 Molecular weight = 302.12amu Principal moments of inertia in cm(-1) A = 0.038239 B = 0.002560 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.056668 B =10936.404092 C =11182.219470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.269 3.731 3 H 0.016 0.984 4 C -0.553 4.553 5 H 0.070 0.930 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.284 1.284 10 H -0.272 1.272 11 H -0.266 1.266 12 N -0.671 5.671 13 C 0.495 3.505 14 O -0.557 6.557 15 C 0.519 3.481 16 O -0.520 6.520 17 N -0.630 5.630 18 C 0.089 3.911 19 C -0.078 4.078 20 C -0.122 4.122 21 C 0.110 3.890 22 N -0.509 5.509 23 H 0.449 0.551 24 N -0.274 5.274 25 C 0.087 3.913 26 C -0.179 4.179 27 C -0.052 4.052 28 H 0.039 0.961 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.268 0.732 32 H 0.410 0.590 33 H 0.430 0.570 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.234 0.766 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.408 -4.430 21.941 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.033 0.967 4 C -0.591 4.591 5 H 0.088 0.912 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.795 3.205 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.191 1.191 12 N -0.321 5.321 13 C 0.275 3.725 14 O -0.437 6.437 15 C 0.301 3.699 16 O -0.395 6.395 17 N -0.277 5.277 18 C -0.006 4.006 19 C -0.100 4.100 20 C -0.144 4.144 21 C -0.006 4.006 22 N -0.225 5.225 23 H 0.296 0.704 24 N -0.087 5.087 25 C -0.111 4.111 26 C -0.187 4.187 27 C -0.075 4.075 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.246 0.754 33 H 0.270 0.730 34 H 0.149 0.851 35 H 0.169 0.831 36 H 0.250 0.750 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.705 -4.795 22.865 24.049 hybrid contribution -0.309 -0.363 -1.626 1.694 sum 5.396 -5.158 21.239 22.512 Atomic orbital electron populations 1.21932 0.97458 0.99807 1.00346 1.18604 0.91690 0.92389 0.80692 0.96657 1.21467 1.33084 1.13800 0.90775 0.91167 1.25717 0.94755 0.95553 1.02044 1.70013 1.36513 1.23606 1.24874 0.85415 0.78645 0.78694 0.77709 1.20888 1.19702 1.19127 1.46259 1.61915 1.14847 1.09032 1.20154 0.80201 0.87019 0.85096 1.90714 1.51483 1.16286 1.85172 1.20138 0.78467 0.86839 0.84495 1.90738 1.47818 1.16014 1.84980 1.42972 1.66054 1.13372 1.05335 1.17561 1.01472 0.93885 0.87643 1.20784 0.98618 0.93594 0.97010 1.19805 1.00977 1.01449 0.92207 1.19040 0.97760 0.94989 0.88845 1.45992 1.46263 1.15125 1.15166 0.70408 1.76536 1.13064 0.96817 1.22280 1.25697 0.97232 0.98997 0.89161 1.19892 1.06354 0.94451 0.98040 1.20474 0.94588 1.01292 0.91161 0.94150 0.96002 0.90841 0.92317 0.75405 0.73006 0.85062 0.83054 0.75025 0.81986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.64 9.26 71.98 0.67 -5.97 16 2 C 0.27 13.50 2.56 44.24 0.11 13.61 16 3 H 0.02 0.89 7.58 -2.39 -0.02 0.88 16 4 C -0.55 -28.91 8.73 25.60 0.22 -28.68 16 5 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -50.58 11.32 21.45 0.24 -50.34 16 8 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 9 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 12 N -0.67 -28.21 5.06 -447.53 -2.27 -30.48 16 13 C 0.50 19.20 7.85 87.24 0.68 19.89 16 14 O -0.56 -23.99 16.15 -3.27 -0.05 -24.04 16 15 C 0.52 16.50 7.61 87.24 0.66 17.17 16 16 O -0.52 -17.74 14.16 -3.35 -0.05 -17.78 16 17 N -0.63 -15.67 5.32 -304.82 -1.62 -17.29 16 18 C 0.09 2.00 6.26 38.15 0.24 2.24 16 19 C -0.08 -1.79 8.57 22.18 0.19 -1.60 16 20 C -0.12 -2.29 10.01 22.11 0.22 -2.07 16 21 C 0.11 2.07 7.33 39.19 0.29 2.36 16 22 N -0.51 -8.30 7.37 -51.45 -0.38 -8.68 16 23 H 0.45 4.80 8.96 -213.48 -1.91 2.89 16 24 N -0.27 -4.87 12.55 -53.08 -0.67 -5.54 16 25 C 0.09 1.26 12.28 86.93 1.07 2.32 16 26 C -0.18 -3.23 6.36 -20.25 -0.13 -3.36 16 27 C -0.05 -0.93 10.02 22.65 0.23 -0.70 16 28 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 31 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 32 H 0.41 15.89 8.01 -92.71 -0.74 15.15 16 33 H 0.43 9.28 8.29 -92.71 -0.77 8.51 16 34 H 0.13 3.33 6.41 -2.91 -0.02 3.31 16 35 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.23 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -66.58 326.76 -0.12 -66.69 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -2.26 Total: 27.29 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 4.90 Total: 16.72 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -4.69 Total: -112.33 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.10 Total: -41.82 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -66.58 -0.12 -66.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122970795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.906 kcal (2) G-P(sol) polarization free energy of solvation -66.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds