Wall clock time and date at job start Fri Apr 10 2020 17:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47658 * 2 1 4 4 O 1.42903 * 109.47051 * 120.00555 * 2 1 3 5 5 C 1.35892 * 117.00440 * 83.61790 * 4 2 1 6 6 C 1.38754 * 120.05823 * 174.49434 * 5 4 2 7 7 C 1.38122 * 119.94657 * 179.70318 * 6 5 4 8 8 C 1.38293 * 120.05315 * 0.59411 * 7 6 5 9 9 C 1.38238 * 120.11142 * 359.68115 * 8 7 6 10 10 C 1.50700 * 119.97541 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47219 * 270.02421 * 10 9 8 12 12 O 1.21293 * 120.00004 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99917 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99673 * 179.97438 * 13 11 10 15 15 H 1.07998 * 120.00055 * 23.42342 * 14 13 11 16 16 C 1.38959 * 120.00073 * 203.42303 * 14 13 11 17 17 N 1.31418 * 119.99533 * 10.17159 * 16 14 13 18 18 Si 1.86794 * 120.00326 * 190.17017 * 16 14 13 19 19 H 1.48505 * 109.47085 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47033 * 119.99714 * 18 16 14 21 21 H 1.48499 * 109.47403 * 240.00106 * 18 16 14 22 22 C 1.46498 * 120.00040 * 359.97438 * 13 11 10 23 23 C 1.47200 * 109.47248 * 83.93573 * 22 13 11 24 24 N 6.74629 * 69.85454 * 227.94457 * 2 1 3 25 25 C 1.38174 * 120.05629 * 0.02562 * 9 8 7 26 26 H 1.08998 * 109.47405 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46617 * 300.00447 * 1 2 3 28 28 H 1.09000 * 109.47127 * 59.99495 * 1 2 3 29 29 H 1.09007 * 109.46617 * 239.99553 * 2 1 3 30 30 H 1.08996 * 109.47510 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47264 * 300.00421 * 3 2 1 32 32 H 1.09001 * 109.47406 * 59.99654 * 3 2 1 33 33 H 1.07995 * 120.02575 * 359.97354 * 6 5 4 34 34 H 1.07995 * 119.97617 * 180.29970 * 7 6 5 35 35 H 1.07997 * 119.94358 * 179.70137 * 8 7 6 36 36 H 1.09007 * 109.46837 * 30.02207 * 10 9 8 37 37 H 1.09004 * 109.47512 * 150.01851 * 10 9 8 38 38 H 0.96999 * 119.99238 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.46909 * 203.92633 * 22 13 11 40 40 H 1.08999 * 109.47489 * 323.92969 * 22 13 11 41 41 H 1.07995 * 120.02529 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.0851 -2.0291 1.1076 6 6 2.6453 -2.7393 2.1599 7 6 2.7186 -4.1172 2.1000 8 6 2.2455 -4.7883 0.9873 9 6 1.6922 -4.0827 -0.0649 10 6 1.1781 -4.8171 -1.2763 11 6 2.2881 -4.9605 -2.2853 12 8 3.3884 -4.5103 -2.0447 13 7 2.0583 -5.5891 -3.4552 14 6 3.0681 -5.7191 -4.3733 15 1 4.0984 -5.6786 -4.0523 16 6 2.7658 -5.9030 -5.7171 17 7 1.5302 -5.7538 -6.1390 18 14 4.1158 -6.3623 -6.9238 19 1 5.4093 -6.4694 -6.2022 20 1 3.7924 -7.6669 -7.5553 21 1 4.2188 -5.3164 -7.9730 22 6 0.7296 -6.1334 -3.7456 23 6 -0.1300 -5.0676 -4.2858 24 7 -0.7934 -4.2425 -4.7026 25 6 1.6110 -2.7046 -0.0072 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5140 -0.8900 30 1 3.1301 1.4423 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8899 33 1 3.0196 -2.2153 3.0268 34 1 3.1501 -4.6708 2.9209 35 1 2.3081 -5.8655 0.9403 36 1 0.8265 -5.8054 -0.9799 37 1 0.3548 -4.2563 -1.7189 38 1 1.3193 -5.8818 -7.0771 39 1 0.8178 -6.9355 -4.4785 40 1 0.2893 -6.5257 -2.8289 41 1 1.1783 -2.1539 -0.8293 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126559216.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:59 Heat of formation + Delta-G solvation = -15.970453 kcal Electronic energy + Delta-G solvation = -24400.437494 eV Core-core repulsion = 20860.248430 eV Total energy + Delta-G solvation = -3540.189064 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.19604 -38.93320 -37.46910 -35.74131 -34.33054 -33.37416 -32.21341 -31.61565 -29.69396 -27.77588 -27.34869 -27.15010 -24.56227 -23.11945 -21.57279 -20.70592 -19.31254 -17.95621 -17.55619 -16.53702 -16.26411 -16.01185 -15.60610 -15.36470 -14.67980 -14.43586 -14.23932 -14.02996 -13.52357 -13.30485 -13.01006 -12.88658 -12.79939 -12.58521 -12.41083 -12.24387 -11.96484 -11.73486 -11.68955 -11.47624 -11.32746 -11.18785 -11.17881 -10.98493 -10.61933 -10.55852 -10.50775 -10.37725 -10.31972 -9.27682 -8.78292 -8.43481 -8.03307 -7.88800 -6.49083 -4.08198 1.60720 1.73680 3.08174 3.20610 3.26210 3.29981 3.54488 3.76853 3.97804 4.00245 4.14053 4.73321 4.82643 4.86134 4.90495 5.01870 5.04699 5.11823 5.21214 5.30169 5.43444 5.45482 5.58498 5.62284 5.66438 5.69249 5.73518 5.84988 5.88427 5.94990 6.02067 6.09331 6.12310 6.29253 6.55582 6.56345 6.68594 6.92049 7.03769 7.43926 7.63554 7.91139 8.26895 8.74409 8.98661 9.16492 9.71366 10.56278 Molecular weight = 302.14amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.004132 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.510544 B = 6775.175145 C = 7202.251657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.074 3.926 3 C -0.146 4.146 4 O -0.314 6.314 5 C 0.129 3.871 6 C -0.162 4.162 7 C -0.083 4.083 8 C -0.144 4.144 9 C -0.007 4.007 10 C -0.106 4.106 11 C 0.464 3.536 12 O -0.561 6.561 13 N -0.448 5.448 14 C -0.305 4.305 15 H 0.106 0.894 16 C 0.030 3.970 17 N -0.889 5.889 18 Si 0.932 3.068 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.282 1.282 22 C 0.222 3.778 23 C 0.250 3.750 24 N -0.479 5.479 25 C -0.193 4.193 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.273 0.727 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 2.982 12.409 13.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.018 3.982 3 C -0.203 4.203 4 O -0.229 6.229 5 C 0.084 3.916 6 C -0.181 4.181 7 C -0.101 4.101 8 C -0.162 4.162 9 C -0.008 4.008 10 C -0.146 4.146 11 C 0.252 3.748 12 O -0.442 6.442 13 N -0.169 5.169 14 C -0.433 4.433 15 H 0.123 0.877 16 C -0.172 4.172 17 N -0.529 5.529 18 Si 0.759 3.241 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.208 1.208 22 C 0.095 3.905 23 C -0.068 4.068 24 N -0.160 5.160 25 C -0.212 4.212 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.149 0.851 40 H 0.098 0.902 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.286 4.539 11.869 13.125 hybrid contribution 0.642 -0.556 -1.106 1.394 sum -2.644 3.984 10.763 11.777 Atomic orbital electron populations 1.22390 0.95200 1.03270 1.02858 1.22422 0.94263 0.93644 0.87850 1.21825 1.02156 0.93573 1.02765 1.86056 1.81357 1.16446 1.39023 1.18888 0.95857 0.82232 0.94638 1.20297 1.05229 0.93781 0.98797 1.20827 0.98223 0.93142 0.97866 1.20866 1.01460 0.99917 0.93985 1.19170 0.95139 0.92665 0.93784 1.20771 0.98718 1.01368 0.93768 1.20004 0.89432 0.81347 0.84053 1.90581 1.25188 1.50110 1.78353 1.43592 1.08595 1.49446 1.15264 1.19762 0.88834 1.48106 0.86555 0.87658 1.25344 0.97455 0.96790 0.97648 1.69701 1.18197 1.48122 1.16874 0.85759 0.80624 0.78009 0.79747 1.19165 1.20510 1.20849 1.18752 0.80869 0.91559 0.99347 1.29384 0.91966 0.94226 0.91250 1.80967 1.12972 1.10649 1.11364 1.21100 1.06792 0.94887 0.98413 0.91662 0.91638 0.91056 0.90590 0.91646 0.90590 0.91692 0.85843 0.85722 0.86084 0.88697 0.89413 0.91665 0.85137 0.90178 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 9.14 37.16 0.34 -1.71 16 2 C 0.07 0.96 2.85 -26.73 -0.08 0.89 16 3 C -0.15 -1.51 9.56 37.15 0.36 -1.16 16 4 O -0.31 -4.71 9.81 -19.40 -0.19 -4.90 16 5 C 0.13 2.06 6.59 -39.22 -0.26 1.80 16 6 C -0.16 -2.36 9.99 -39.43 -0.39 -2.75 16 7 C -0.08 -1.13 10.04 -39.60 -0.40 -1.53 16 8 C -0.14 -2.20 9.70 -39.56 -0.38 -2.58 16 9 C -0.01 -0.12 4.37 -104.65 -0.46 -0.58 16 10 C -0.11 -1.81 4.44 -29.04 -0.13 -1.94 16 11 C 0.46 10.30 7.56 -10.99 -0.08 10.22 16 12 O -0.56 -14.61 15.74 5.55 0.09 -14.52 16 13 N -0.45 -10.21 2.60 -117.93 -0.31 -10.51 16 14 C -0.31 -7.74 9.28 -14.93 -0.14 -7.88 16 15 H 0.11 2.83 7.42 -52.49 -0.39 2.44 16 16 C 0.03 0.73 5.10 -17.46 -0.09 0.65 16 17 N -0.89 -22.11 9.08 55.50 0.50 -21.61 16 18 Si 0.93 19.72 29.56 -169.99 -5.03 14.69 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 22 C 0.22 4.27 4.91 -6.83 -0.03 4.24 16 23 C 0.25 5.39 12.78 -20.70 -0.26 5.12 16 24 N -0.48 -11.16 18.55 42.22 0.78 -10.38 16 25 C -0.19 -3.28 7.84 -39.43 -0.31 -3.59 16 26 H 0.06 0.81 6.77 -51.93 -0.35 0.45 16 27 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.10 6.39 -51.92 -0.33 0.77 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.09 1.30 7.36 -51.93 -0.38 0.92 16 37 H 0.09 1.46 7.43 -51.93 -0.39 1.08 16 38 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 39 H 0.13 2.59 6.51 -51.93 -0.34 2.25 16 40 H 0.08 1.15 6.69 -51.93 -0.35 0.80 16 41 H 0.12 2.10 5.38 -52.49 -0.28 1.81 16 LS Contribution 347.94 15.07 5.24 5.24 Total: -1.00 -31.33 347.94 -6.55 -37.88 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.33 Total: 4.92 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.32 Total: -0.81 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.98 Total: -42.50 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.10 Total: -19.43 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.33 -6.55 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126559216.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.911 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds