Wall clock time and date at job start Fri Apr 10 2020 17:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38194 * 119.95424 * 2 1 4 4 C 1.38128 * 120.13890 * 180.02562 * 3 2 1 5 5 C 1.38982 * 120.05074 * 359.97031 * 4 3 2 6 6 N 1.39677 * 120.03661 * 180.02562 * 5 4 3 7 7 C 1.46501 * 120.00384 * 0.02562 * 6 5 4 8 8 C 1.50698 * 109.47139 * 179.97438 * 7 6 5 9 9 O 1.21292 * 119.99948 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00142 * 179.97438 * 8 7 6 11 11 C 1.37097 * 120.00568 * 179.97438 * 10 8 7 12 12 H 1.08005 * 119.99604 * 0.02562 * 11 10 8 13 13 C 1.38942 * 120.00387 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00286 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00095 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47064 * 90.00012 * 15 13 11 17 17 H 1.48504 * 109.47150 * 209.99938 * 15 13 11 18 18 H 1.48503 * 109.47107 * 329.99730 * 15 13 11 19 19 C 1.38780 * 119.91802 * 359.81486 * 5 4 3 20 20 C 1.38711 * 119.85762 * 0.44381 * 19 5 4 21 21 N 1.40259 * 120.02607 * 179.79188 * 20 19 5 22 22 C 1.35070 * 127.38651 * 312.62541 * 21 20 19 23 23 N 1.30737 * 107.27377 * 179.97438 * 22 21 20 24 24 N 1.28421 * 110.64692 * 359.97438 * 23 22 21 25 25 N 1.28951 * 110.20269 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.47152 * 264.63438 * 1 2 3 27 27 H 1.09001 * 109.47177 * 24.63444 * 1 2 3 28 28 H 1.09000 * 109.46755 * 144.63822 * 1 2 3 29 29 H 1.07997 * 119.93442 * 0.02562 * 3 2 1 30 30 H 1.07993 * 119.97580 * 179.97438 * 4 3 2 31 31 H 0.97005 * 119.99776 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.46386 * 299.99424 * 7 6 5 33 33 H 1.08998 * 109.47206 * 59.99495 * 7 6 5 34 34 H 0.97000 * 119.99841 * 0.02562 * 10 8 7 35 35 H 0.96994 * 120.00295 * 180.02562 * 14 13 11 36 36 H 1.07997 * 120.06884 * 180.22863 * 19 5 4 37 37 H 1.08007 * 126.36385 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1973 0.0000 4 6 3.5783 1.2018 -0.0005 5 6 4.2781 0.0010 -0.0005 6 7 5.6749 0.0059 -0.0004 7 6 6.4031 1.2771 0.0000 8 6 7.8856 1.0068 0.0006 9 8 8.2938 -0.1354 0.0010 10 7 8.7579 2.0341 0.0005 11 6 10.1067 1.7883 0.0016 12 1 10.4702 0.7712 0.0020 13 6 11.0060 2.8474 0.0010 14 7 12.2988 2.6118 0.0015 15 14 10.3773 4.6065 -0.0004 16 1 10.2104 5.0736 1.3993 17 1 11.3527 5.4802 -0.7009 18 1 9.0691 4.6641 -0.7009 19 6 3.5875 -1.2027 0.0041 20 6 2.2004 -1.2030 -0.0009 21 7 1.4988 -2.4175 -0.0007 22 6 1.7206 -3.4929 -0.7873 23 7 0.8421 -4.4031 -0.4573 24 7 0.0803 -3.9768 0.4846 25 7 0.4144 -2.7770 0.8188 26 1 -0.3634 -0.0961 1.0232 27 1 -0.3633 0.9341 -0.4284 28 1 -0.3633 -0.8381 -0.5948 29 1 1.6552 2.1316 0.0004 30 1 4.1148 2.1390 -0.0010 31 1 6.1628 -0.8325 0.0000 32 1 6.1378 1.8480 -0.8899 33 1 6.1378 1.8475 0.8902 34 1 8.4315 2.9475 0.0006 35 1 12.9266 3.3512 0.0014 36 1 4.1288 -2.1371 0.0079 37 1 2.4823 -3.5839 -1.5477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175114948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:22 Heat of formation + Delta-G solvation = 98.183394 kcal Electronic energy + Delta-G solvation = -22916.057967 eV Core-core repulsion = 19309.571393 eV Total energy + Delta-G solvation = -3606.486574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.123 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.24825 -40.98827 -40.24702 -37.34086 -36.10822 -35.38729 -33.84293 -33.42604 -32.63978 -31.20922 -29.37717 -27.15792 -25.79813 -25.59960 -24.29084 -23.26931 -21.98825 -21.38086 -20.44056 -19.40202 -18.25515 -17.73642 -17.19163 -17.02873 -16.80527 -16.42419 -16.36649 -15.89253 -15.49862 -15.08820 -14.89444 -14.58503 -14.43888 -14.31924 -14.22410 -14.03310 -13.64380 -13.27835 -13.08931 -12.95206 -12.74644 -12.43498 -12.35292 -12.19742 -12.01505 -11.97679 -11.56553 -11.55930 -10.88328 -10.62722 -10.31359 -9.91323 -8.44364 -8.40700 -6.07358 -0.48528 0.35009 0.47341 0.81949 1.18343 1.31492 1.36526 1.46538 1.83906 2.21103 2.24101 2.62703 2.94874 3.12291 3.22560 3.59438 3.79552 3.88231 3.95759 4.01151 4.10696 4.22720 4.30772 4.40520 4.49694 4.50636 4.67263 4.68807 4.76757 5.03031 5.16743 5.28841 5.32964 5.47663 5.50878 5.78593 5.88430 6.21925 6.52444 6.65055 6.81098 7.29431 7.31269 7.83320 8.72486 Molecular weight = 302.12amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.002635 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.223787 B =10624.245110 C =11431.044720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.129 4.129 3 C -0.047 4.047 4 C -0.175 4.175 5 C 0.228 3.772 6 N -0.731 5.731 7 C 0.122 3.878 8 C 0.440 3.560 9 O -0.623 6.623 10 N -0.578 5.578 11 C -0.333 4.333 12 H 0.056 0.944 13 C -0.013 4.013 14 N -0.931 5.931 15 Si 0.964 3.036 16 H -0.257 1.257 17 H -0.278 1.278 18 H -0.222 1.222 19 C -0.188 4.188 20 C 0.145 3.855 21 N -0.322 5.322 22 C 0.243 3.757 23 N -0.360 5.360 24 N -0.067 5.067 25 N -0.090 5.090 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.039 0.961 29 H 0.166 0.834 30 H 0.155 0.845 31 H 0.405 0.595 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.394 0.606 35 H 0.280 0.720 36 H 0.135 0.865 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.140 3.449 -2.724 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.133 4.133 3 C -0.066 4.066 4 C -0.198 4.198 5 C 0.122 3.878 6 N -0.361 5.361 7 C -0.005 4.005 8 C 0.228 3.772 9 O -0.509 6.509 10 N -0.218 5.218 11 C -0.462 4.462 12 H 0.075 0.925 13 C -0.213 4.213 14 N -0.571 5.571 15 Si 0.783 3.217 16 H -0.181 1.181 17 H -0.203 1.203 18 H -0.145 1.145 19 C -0.213 4.213 20 C 0.054 3.946 21 N -0.113 5.113 22 C -0.053 4.053 23 N -0.210 5.210 24 N -0.062 5.062 25 N -0.075 5.075 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.058 0.942 29 H 0.184 0.816 30 H 0.173 0.827 31 H 0.242 0.758 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.230 0.770 35 H 0.090 0.910 36 H 0.153 0.847 37 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -23.654 2.389 -1.983 23.857 hybrid contribution 1.644 0.508 -0.289 1.745 sum -22.010 2.897 -2.272 22.316 Atomic orbital electron populations 1.20637 0.89916 1.02746 1.02349 1.19756 0.96989 0.91190 1.05400 1.21020 0.93021 0.97457 0.95108 1.21213 0.94725 0.97115 1.06708 1.17574 0.82956 0.93635 0.93622 1.44504 1.02297 1.08497 1.80839 1.21038 0.86471 0.87565 1.05441 1.20823 0.89477 0.84957 0.81953 1.90549 1.80531 1.23407 1.56423 1.41907 1.05338 1.08151 1.66453 1.18987 0.81278 0.95082 1.50844 0.92549 1.26175 0.94842 1.04584 0.95677 1.69800 1.02888 1.34928 1.49440 0.85383 0.80263 0.75970 0.80050 1.18136 1.20348 1.14511 1.20294 0.91101 0.98440 1.11492 1.17043 0.89436 0.81233 1.06858 1.49003 1.23674 1.13226 1.25360 1.28337 0.99184 0.81622 0.96166 1.74413 1.06816 1.27422 1.12308 1.78042 1.17928 1.03053 1.07190 1.82664 1.01321 1.09381 1.14166 0.91205 0.88976 0.94224 0.81642 0.82708 0.75787 0.86686 0.86960 0.76956 0.91016 0.84674 0.70498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 8.89 71.24 0.63 -0.84 16 2 C -0.13 -2.08 5.90 -19.73 -0.12 -2.20 16 3 C -0.05 -0.58 9.66 22.23 0.21 -0.36 16 4 C -0.17 -2.47 9.31 22.42 0.21 -2.26 16 5 C 0.23 4.30 6.65 38.20 0.25 4.56 16 6 N -0.73 -17.20 5.70 -343.18 -1.96 -19.16 16 7 C 0.12 2.87 5.39 85.63 0.46 3.33 16 8 C 0.44 17.06 7.85 87.66 0.69 17.74 16 9 O -0.62 -30.63 15.24 -3.07 -0.05 -30.68 16 10 N -0.58 -24.04 5.09 -306.99 -1.56 -25.60 16 11 C -0.33 -18.08 10.16 84.04 0.85 -17.23 16 12 H 0.06 3.71 7.39 -2.91 -0.02 3.69 16 13 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 14 N -0.93 -53.49 13.96 21.66 0.30 -53.18 16 15 Si 0.96 35.18 27.74 68.60 1.90 37.08 16 16 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 17 H -0.28 -10.32 7.11 99.48 0.71 -9.62 16 18 H -0.22 -6.41 6.52 99.48 0.65 -5.77 16 19 C -0.19 -3.46 9.52 22.51 0.21 -3.25 16 20 C 0.15 2.71 6.30 38.05 0.24 2.95 16 21 N -0.32 -6.58 3.15 -191.11 -0.60 -7.19 16 22 C 0.24 4.19 12.54 180.18 2.26 6.45 16 23 N -0.36 -8.61 12.15 -60.13 -0.73 -9.34 16 24 N -0.07 -1.83 13.39 37.02 0.50 -1.33 16 25 N -0.09 -2.29 12.37 37.02 0.46 -1.83 16 26 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.09 0.90 8.05 -2.39 -0.02 0.88 16 28 H 0.04 0.71 7.21 -2.39 -0.02 0.70 16 29 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 30 H 0.16 1.52 6.72 -2.91 -0.02 1.50 16 31 H 0.41 11.29 7.45 -92.70 -0.69 10.60 16 32 H 0.12 1.98 7.95 -2.39 -0.02 1.97 16 33 H 0.11 1.99 7.95 -2.39 -0.02 1.97 16 34 H 0.39 12.95 5.76 -92.71 -0.53 12.42 16 35 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 36 H 0.14 2.32 8.05 -2.91 -0.02 2.30 16 37 H 0.28 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -76.78 326.30 4.50 -72.28 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.14 Total: 30.30 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.38 Total: 8.66 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -3.60 Total: -117.63 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.05 Total: -30.68 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 1.90 Total: 37.08 kcal Total: -76.78 4.50 -72.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175114948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.462 kcal (2) G-P(sol) polarization free energy of solvation -76.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds