Wall clock time and date at job start Fri Apr 10 2020 17:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46959 * 2 1 4 4 C 1.34779 * 119.99894 * 180.02562 * 3 2 1 5 5 O 1.21277 * 119.99892 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99974 * 180.02562 * 4 3 2 7 7 C 1.53492 * 114.20372 * 179.97438 * 6 4 3 8 8 N 1.47067 * 87.98407 * 220.34021 * 7 6 4 9 9 C 1.34772 * 136.06320 * 207.08140 * 8 7 6 10 10 O 1.21557 * 119.99601 * 5.68445 * 9 8 7 11 11 C 1.47881 * 120.00593 * 185.68359 * 9 8 7 12 12 C 1.39919 * 120.02370 * 7.28171 * 11 9 8 13 13 C 1.38332 * 120.35756 * 180.28529 * 12 11 9 14 14 C 1.37745 * 120.41498 * 359.72340 * 13 12 11 15 15 C 1.40750 * 120.03820 * 359.97438 * 14 13 12 16 16 C 1.41442 * 120.17921 * 180.02562 * 15 14 13 17 17 H 1.07988 * 120.00174 * 325.75313 * 16 15 14 18 18 C 1.39941 * 119.99893 * 145.74869 * 16 15 14 19 19 N 1.30834 * 119.99938 * 354.44397 * 18 16 15 20 20 Si 1.86795 * 120.00119 * 174.44549 * 18 16 15 21 21 H 1.48508 * 109.47110 * 89.99914 * 20 18 16 22 22 H 1.48497 * 109.47371 * 209.99754 * 20 18 16 23 23 H 1.48496 * 109.46932 * 330.00167 * 20 18 16 24 24 C 1.38994 * 120.02758 * 187.01165 * 11 9 8 25 25 C 1.47066 * 87.88500 * 27.34493 * 8 7 6 26 26 H 1.09000 * 109.46572 * 299.99899 * 1 2 3 27 27 H 1.08998 * 109.46808 * 60.00057 * 1 2 3 28 28 H 1.08993 * 109.46658 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47062 * 240.00634 * 2 1 3 30 30 H 1.08995 * 109.47305 * 119.99864 * 2 1 3 31 31 H 0.97000 * 120.00403 * 359.97438 * 3 2 1 32 32 H 1.09000 * 113.40853 * 313.19666 * 6 4 3 33 33 H 1.08997 * 113.46621 * 105.56820 * 7 6 4 34 34 H 1.08998 * 113.52360 * 335.12711 * 7 6 4 35 35 H 1.07999 * 119.82326 * 0.02562 * 12 11 9 36 36 H 1.08000 * 119.79142 * 179.70388 * 13 12 11 37 37 H 1.07997 * 119.98433 * 179.97438 * 14 13 12 38 38 H 0.97002 * 119.99931 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.20218 * 359.97438 * 24 11 9 40 40 H 1.09001 * 113.47384 * 87.43228 * 25 8 7 41 41 H 1.09002 * 113.47004 * 217.87879 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 -0.0005 5 8 4.1316 0.7057 -0.0005 6 6 3.8458 3.0484 0.0001 7 6 5.3755 3.1751 0.0000 8 7 5.2316 4.2868 0.9519 9 6 5.9412 5.3862 1.2746 10 8 6.9293 5.6821 0.6315 11 6 5.5179 6.2324 2.4111 12 6 4.4751 5.8143 3.2450 13 6 4.0696 6.6032 4.3065 14 6 4.6911 7.8064 4.5585 15 6 5.7462 8.2406 3.7344 16 6 6.3869 9.4752 3.9907 17 1 5.8195 10.3073 4.3804 18 6 7.7561 9.6185 3.7395 19 7 8.4655 8.5826 3.3715 20 14 8.5708 11.2886 3.9297 21 1 9.0631 11.4436 5.3222 22 1 9.7131 11.3924 2.9865 23 1 7.5841 12.3575 3.6316 24 6 6.1595 7.4411 2.6551 25 6 3.9757 3.6675 1.4015 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.3881 2.1185 -0.0004 32 1 3.3442 3.6853 -0.7285 33 1 5.7858 3.4787 -0.9631 34 1 5.8839 2.3072 0.4199 35 1 3.9812 4.8726 3.0564 36 1 3.2605 6.2738 4.9415 37 1 4.3686 8.4169 5.3889 38 1 9.4147 8.6819 3.1977 39 1 6.9681 7.7655 2.0170 40 1 4.1141 2.9290 2.1911 41 1 3.1934 4.3906 1.6323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178124081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:39 Heat of formation + Delta-G solvation = -35.626030 kcal Electronic energy + Delta-G solvation = -23652.400201 eV Core-core repulsion = 20111.358807 eV Total energy + Delta-G solvation = -3541.041394 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.02895 -40.46744 -39.11341 -38.34903 -36.25177 -35.52667 -32.63101 -31.75589 -31.32027 -30.29661 -27.66669 -26.73556 -25.82606 -23.75421 -22.78099 -22.74065 -21.22216 -20.36175 -19.32680 -18.52025 -17.65003 -17.60700 -17.07994 -16.68771 -16.41363 -16.34700 -16.01749 -15.28348 -15.09746 -15.05686 -14.67708 -14.30712 -14.21253 -13.99129 -13.64560 -13.51573 -13.33429 -13.20624 -12.91201 -12.80995 -12.62604 -12.54340 -12.32138 -12.26606 -11.94793 -11.76737 -11.41375 -11.14765 -11.09764 -10.68823 -10.08765 -9.90351 -9.44468 -9.30725 -8.57467 -6.42443 0.32831 1.00018 1.36590 1.45592 1.47909 1.51584 1.66191 1.99667 2.21183 2.30596 2.81537 3.07653 3.53280 3.63416 3.81745 3.96342 4.09349 4.21695 4.29581 4.32782 4.40342 4.47047 4.54674 4.58887 4.61783 4.70439 4.92789 5.00077 5.01197 5.10473 5.12674 5.18341 5.32936 5.33869 5.49181 5.51173 5.83928 5.91405 6.05406 6.29127 6.50242 6.55488 6.63934 6.90303 6.94258 7.15220 7.22103 8.39511 Molecular weight = 302.14amu Principal moments of inertia in cm(-1) A = 0.030418 B = 0.002913 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.298781 B = 9609.779478 C =10328.359963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 N -0.711 5.711 4 C 0.533 3.467 5 O -0.578 6.578 6 C -0.128 4.128 7 C 0.115 3.885 8 N -0.649 5.649 9 C 0.587 3.413 10 O -0.591 6.591 11 C -0.140 4.140 12 C -0.190 4.190 13 C -0.101 4.101 14 C -0.200 4.200 15 C 0.065 3.935 16 C -0.502 4.502 17 H 0.084 0.916 18 C 0.022 3.978 19 N -0.846 5.846 20 Si 0.987 3.013 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.253 1.253 24 C -0.117 4.117 25 C 0.117 3.883 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.420 0.580 32 H 0.157 0.843 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.113 0.887 38 H 0.282 0.718 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.312 -13.234 -4.820 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.014 4.014 3 N -0.364 5.364 4 C 0.318 3.682 5 O -0.457 6.457 6 C -0.150 4.150 7 C -0.008 4.008 8 N -0.383 5.383 9 C 0.381 3.619 10 O -0.473 6.473 11 C -0.143 4.143 12 C -0.209 4.209 13 C -0.119 4.119 14 C -0.220 4.220 15 C 0.063 3.937 16 C -0.533 4.533 17 H 0.102 0.898 18 C -0.190 4.190 19 N -0.474 5.474 20 Si 0.808 3.192 21 H -0.184 1.184 22 H -0.201 1.201 23 H -0.176 1.176 24 C -0.138 4.138 25 C -0.005 4.005 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.257 0.743 32 H 0.175 0.825 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.131 0.869 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.912 -13.637 -5.164 22.330 hybrid contribution 1.030 0.989 -0.024 1.428 sum -15.882 -12.648 -5.188 20.955 Atomic orbital electron populations 1.21962 0.91930 1.04104 1.03444 1.21409 0.96182 0.82265 1.01584 1.45966 1.06256 1.10152 1.74004 1.20165 0.82878 0.89919 0.75200 1.90723 1.56694 1.47143 1.51188 1.23132 0.96419 0.94574 1.00887 1.22900 0.95723 0.88042 0.94101 1.49363 1.26299 1.21764 1.40913 1.18385 0.80844 0.79667 0.82979 1.90690 1.28861 1.72898 1.54848 1.19694 1.00872 0.96310 0.97426 1.21355 0.99207 1.02059 0.98313 1.21006 0.99612 0.93950 0.97292 1.21574 1.01479 0.98409 1.00513 1.17959 0.92121 0.93633 0.89949 1.19811 0.94297 0.98376 1.40797 0.89766 1.26854 0.98235 1.01970 0.91919 1.69887 1.08773 1.32831 1.35873 0.85125 0.77918 0.77126 0.79045 1.18425 1.20107 1.17630 1.21440 0.99581 0.94921 0.97828 1.23293 0.85919 0.96093 0.95183 0.91015 0.91074 0.90023 0.92448 0.92417 0.74291 0.82518 0.90391 0.89293 0.83521 0.83728 0.86922 0.90754 0.88944 0.88258 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 10.03 71.98 0.72 -0.01 16 2 C 0.11 1.18 6.39 86.38 0.55 1.73 16 3 N -0.71 -7.90 5.56 -463.05 -2.57 -10.48 16 4 C 0.53 9.85 7.39 87.66 0.65 10.49 16 5 O -0.58 -16.01 15.95 -3.02 -0.05 -16.06 16 6 C -0.13 -2.27 4.51 -11.12 -0.05 -2.32 16 7 C 0.11 3.15 7.96 83.18 0.66 3.81 16 8 N -0.65 -21.56 3.66 -861.22 -3.16 -24.72 16 9 C 0.59 27.15 8.00 86.80 0.69 27.85 16 10 O -0.59 -32.85 17.14 -3.90 -0.07 -32.92 16 11 C -0.14 -6.70 5.87 -20.14 -0.12 -6.82 16 12 C -0.19 -7.25 9.13 22.70 0.21 -7.04 16 13 C -0.10 -3.80 10.01 22.18 0.22 -3.58 16 14 C -0.20 -9.11 9.78 22.77 0.22 -8.88 16 15 C 0.07 3.56 5.50 -21.32 -0.12 3.44 16 16 C -0.50 -27.60 9.04 23.47 0.21 -27.38 16 17 H 0.08 4.33 7.85 -2.92 -0.02 4.31 16 18 C 0.02 1.19 5.31 85.25 0.45 1.64 16 19 N -0.85 -49.06 10.96 21.83 0.24 -48.83 16 20 Si 0.99 40.73 29.56 68.60 2.03 42.76 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 24 C -0.12 -6.60 8.17 23.01 0.19 -6.41 16 25 C 0.12 2.43 5.67 83.27 0.47 2.90 16 26 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.42 1.98 8.47 -92.71 -0.79 1.20 16 32 H 0.16 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.09 2.58 7.46 -2.39 -0.02 2.56 16 35 H 0.15 4.18 4.20 -2.91 -0.01 4.16 16 36 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 37 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.28 15.22 8.30 -92.71 -0.77 14.45 16 39 H 0.09 5.90 6.06 -2.91 -0.02 5.88 16 40 H 0.10 1.91 8.08 -2.39 -0.02 1.89 16 41 H 0.12 1.98 6.78 -2.39 -0.02 1.97 16 Total: -1.00 -80.24 347.23 1.67 -78.57 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.28 Total: 22.24 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 4.97 Total: -10.57 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -5.49 Total: -84.02 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.11 Total: -48.98 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -80.24 1.67 -78.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178124081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.942 kcal (2) G-P(sol) polarization free energy of solvation -80.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds