Wall clock time and date at job start Fri Apr 10 2020 17:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37364 * 125.83245 * 2 1 4 4 N 1.29405 * 108.82762 * 179.77763 * 3 2 1 5 5 N 1.40167 * 108.14283 * 0.38726 * 4 3 2 6 6 C 1.46498 * 126.35164 * 179.88137 * 5 4 3 7 7 C 1.50702 * 109.46553 * 269.68579 * 6 5 4 8 8 O 1.21279 * 120.00290 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99599 * 180.27761 * 7 6 5 10 10 C 1.39235 * 120.00099 * 175.43617 * 9 7 6 11 11 C 1.39487 * 119.83302 * 215.01588 * 10 9 7 12 12 C 1.36372 * 120.16540 * 179.71554 * 11 10 9 13 13 C 1.40870 * 119.83330 * 0.57326 * 12 11 10 14 14 C 1.41150 * 120.16743 * 179.67680 * 13 12 11 15 15 H 1.08000 * 120.00115 * 214.79663 * 14 13 12 16 16 C 1.39904 * 119.99715 * 34.80320 * 14 13 12 17 17 N 1.30874 * 120.00549 * 355.55811 * 16 14 13 18 18 Si 1.86804 * 119.99721 * 175.56022 * 16 14 13 19 19 H 1.48496 * 109.47233 * 59.99807 * 18 16 14 20 20 H 1.48498 * 109.47009 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46988 * 299.99577 * 18 16 14 22 22 C 1.40870 * 119.66977 * 359.69537 * 13 12 11 23 23 C 1.36381 * 119.82680 * 0.02562 * 22 13 12 24 24 C 1.34817 * 125.83492 * 180.02562 * 2 1 3 25 25 O 1.21811 * 126.29843 * 359.97438 * 24 2 1 26 26 H 1.09003 * 109.46444 * 269.97249 * 1 2 3 27 27 H 1.08999 * 109.47116 * 29.96757 * 1 2 3 28 28 H 1.08997 * 109.47315 * 149.97391 * 1 2 3 29 29 H 1.08003 * 125.58646 * 0.02757 * 3 2 1 30 30 H 1.09001 * 109.47137 * 149.68614 * 6 5 4 31 31 H 1.09001 * 109.47072 * 29.68240 * 6 5 4 32 32 H 0.97001 * 120.00135 * 355.42446 * 9 7 6 33 33 H 1.07993 * 119.91426 * 359.96840 * 11 10 9 34 34 H 1.08007 * 120.08247 * 180.25307 * 12 11 10 35 35 H 0.96992 * 120.00224 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.08860 * 179.97438 * 22 13 12 37 37 H 1.08003 * 119.91340 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5066 0.7352 0.0048 5 7 3.5345 -0.6662 -0.0010 6 6 4.7314 -1.5109 -0.0008 7 6 5.1415 -1.8009 -1.4217 8 8 4.4972 -1.3472 -2.3435 9 7 6.2209 -2.5697 -1.6679 10 6 6.5448 -2.9163 -2.9769 11 6 7.0960 -4.1688 -3.2469 12 6 7.4104 -4.5176 -4.5273 13 6 7.1885 -3.6046 -5.5769 14 6 7.5176 -3.9556 -6.9038 15 1 7.8900 -3.2044 -7.5846 16 6 7.3614 -5.2767 -7.3371 17 7 6.9934 -6.2041 -6.4902 18 14 7.6782 -5.7168 -9.1247 19 1 9.0838 -5.3886 -9.4737 20 1 7.4452 -7.1696 -9.3255 21 1 6.7581 -4.9424 -9.9957 22 6 6.6367 -2.3394 -5.2956 23 6 6.3220 -2.0070 -4.0108 24 6 2.2543 -1.0930 -0.0005 25 8 1.8805 -2.2523 -0.0006 26 1 -0.3632 -0.0005 1.0277 27 1 -0.3633 0.8903 -0.5133 28 1 -0.3634 -0.8897 -0.5142 29 1 1.9250 2.1374 0.0004 30 1 4.5151 -2.4474 0.5133 31 1 5.5415 -0.9931 0.5127 32 1 6.7721 -2.8814 -0.9331 33 1 7.2704 -4.8657 -2.4406 34 1 7.8334 -5.4893 -4.7354 35 1 6.8847 -7.1198 -6.7908 36 1 6.4640 -1.6340 -6.0950 37 1 5.8992 -1.0372 -3.7935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179394021.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:43 Heat of formation + Delta-G solvation = 19.720412 kcal Electronic energy + Delta-G solvation = -23436.292889 eV Core-core repulsion = 19794.111153 eV Total energy + Delta-G solvation = -3642.181736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.117 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.42020 -41.22720 -39.13370 -38.43967 -36.41981 -36.04514 -34.78044 -32.93678 -31.53077 -30.94954 -29.38996 -27.88639 -26.54473 -24.01924 -23.34116 -22.78107 -22.25497 -21.31064 -19.32672 -18.99662 -18.53066 -17.94025 -17.38696 -17.14985 -16.99988 -16.75471 -16.17829 -15.71155 -15.63262 -15.26189 -14.89422 -14.54514 -14.30941 -14.06240 -13.66888 -13.58425 -13.48939 -13.38218 -13.26601 -12.92984 -12.85567 -12.76991 -12.51078 -11.86984 -11.47309 -11.44268 -11.39443 -11.22152 -10.79287 -10.60623 -9.67130 -9.49915 -8.77495 -8.52790 -6.36151 0.64240 0.75797 1.08725 1.10283 1.37960 1.43057 1.50192 1.54402 1.68790 2.15545 2.22685 2.40242 2.78127 3.46177 3.62046 3.71850 4.06262 4.11302 4.12214 4.36676 4.41134 4.48157 4.51995 4.77721 4.86283 4.90103 4.98291 5.10175 5.11531 5.29802 5.39667 5.65944 5.67678 5.86560 5.98421 6.10034 6.35554 6.59604 6.60946 6.65674 6.91446 6.93789 6.96435 7.29245 8.39950 Molecular weight = 302.12amu Principal moments of inertia in cm(-1) A = 0.027549 B = 0.002907 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.127598 B = 9629.456121 C = 9852.996629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.560 5.560 3 C 0.278 3.722 4 N -0.310 5.310 5 N -0.446 5.446 6 C 0.150 3.850 7 C 0.480 3.520 8 O -0.569 6.569 9 N -0.637 5.637 10 C 0.019 3.981 11 C -0.117 4.117 12 C -0.160 4.160 13 C 0.069 3.931 14 C -0.499 4.499 15 H 0.073 0.927 16 C 0.027 3.973 17 N -0.841 5.841 18 Si 0.990 3.010 19 H -0.256 1.256 20 H -0.268 1.268 21 H -0.266 1.266 22 C -0.223 4.223 23 C -0.096 4.096 24 C 0.630 3.370 25 O -0.602 6.602 26 H 0.094 0.906 27 H 0.130 0.870 28 H 0.064 0.936 29 H 0.291 0.709 30 H 0.142 0.858 31 H 0.166 0.834 32 H 0.423 0.577 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.285 0.715 36 H 0.094 0.906 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.114 12.356 16.444 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.287 5.287 3 C -0.020 4.020 4 N -0.131 5.131 5 N -0.264 5.264 6 C 0.025 3.975 7 C 0.267 3.733 8 O -0.448 6.448 9 N -0.283 5.283 10 C -0.075 4.075 11 C -0.137 4.137 12 C -0.180 4.180 13 C 0.066 3.934 14 C -0.529 4.529 15 H 0.092 0.908 16 C -0.185 4.185 17 N -0.469 5.469 18 Si 0.811 3.189 19 H -0.180 1.180 20 H -0.192 1.192 21 H -0.190 1.190 22 C -0.243 4.243 23 C -0.116 4.116 24 C 0.329 3.671 25 O -0.479 6.479 26 H 0.112 0.888 27 H 0.148 0.852 28 H 0.083 0.917 29 H 0.306 0.694 30 H 0.160 0.840 31 H 0.183 0.817 32 H 0.261 0.739 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.896 11.875 15.874 21.339 hybrid contribution -0.455 -0.866 -0.824 1.279 sum -8.351 11.009 15.050 20.431 Atomic orbital electron populations 1.22170 0.71808 1.05762 1.05080 1.46123 1.10238 1.05939 1.66406 1.27143 0.84429 0.96128 0.94274 1.76979 1.20433 0.90156 1.25498 1.48366 1.05392 1.04244 1.68433 1.21387 0.86763 0.96786 0.92547 1.21765 0.79979 0.78712 0.92889 1.90689 1.54531 1.52042 1.47499 1.42770 1.27456 1.50955 1.07126 1.17314 1.10916 0.94852 0.84427 1.20588 1.02025 0.93853 0.97198 1.21200 1.04437 1.01048 0.91309 1.18038 0.89605 0.91506 0.94219 1.19712 1.40938 0.95311 0.96958 0.90839 1.26772 0.91961 0.95281 1.04489 1.69817 1.36351 1.02981 1.37756 0.85134 0.79860 0.77819 0.76122 1.18040 1.19191 1.19048 1.20921 1.08190 0.99402 0.95790 1.20479 1.00134 0.98204 0.92806 1.17101 0.82954 0.85537 0.81554 1.91031 1.78566 1.17490 1.60793 0.88760 0.85186 0.91739 0.69390 0.84044 0.81658 0.73883 0.85408 0.86158 0.90415 0.88741 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 11.05 127.77 1.41 2.40 16 2 N -0.56 -11.13 3.14 -683.68 -2.15 -13.28 16 3 C 0.28 4.01 12.66 179.82 2.28 6.28 16 4 N -0.31 -7.17 12.53 -59.41 -0.74 -7.92 16 5 N -0.45 -12.65 3.11 -481.77 -1.50 -14.15 16 6 C 0.15 3.66 6.87 85.63 0.59 4.25 16 7 C 0.48 16.94 7.73 87.66 0.68 17.62 16 8 O -0.57 -26.41 13.85 -3.03 -0.04 -26.45 16 9 N -0.64 -21.49 5.30 -303.11 -1.61 -23.09 16 10 C 0.02 0.83 6.31 38.57 0.24 1.08 16 11 C -0.12 -5.37 9.90 22.14 0.22 -5.15 16 12 C -0.16 -8.57 8.61 22.48 0.19 -8.38 16 13 C 0.07 3.91 5.55 -21.28 -0.12 3.79 16 14 C -0.50 -28.10 9.02 23.39 0.21 -27.89 16 15 H 0.07 3.99 7.85 -2.91 -0.02 3.96 16 16 C 0.03 1.41 5.42 85.24 0.46 1.87 16 17 N -0.84 -45.52 10.60 21.82 0.23 -45.29 16 18 Si 0.99 39.99 29.56 68.60 2.03 42.02 16 19 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 20 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 22 C -0.22 -12.10 9.74 22.48 0.22 -11.88 16 23 C -0.10 -4.86 8.61 22.14 0.19 -4.67 16 24 C 0.63 19.66 8.60 178.99 1.54 21.20 16 25 O -0.60 -23.76 17.71 -4.70 -0.08 -23.84 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.06 1.03 8.08 -2.39 -0.02 1.01 16 29 H 0.29 0.02 8.06 -2.91 -0.02 -0.01 16 30 H 0.14 2.91 8.11 -2.39 -0.02 2.89 16 31 H 0.17 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.42 9.84 8.82 -92.71 -0.82 9.02 16 33 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 34 H 0.12 6.68 6.13 -2.91 -0.02 6.66 16 35 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 36 H 0.09 4.94 8.06 -2.91 -0.02 4.92 16 37 H 0.10 5.23 6.22 -2.91 -0.02 5.22 16 Total: -1.00 -89.39 329.31 4.56 -84.83 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.31 Total: 26.64 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 8.11 Total: 0.53 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -5.77 Total: -103.74 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.13 Total: -50.29 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -89.39 4.56 -84.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179394021.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.554 kcal (2) G-P(sol) polarization free energy of solvation -89.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds