Wall clock time and date at job start Fri Apr 10 2020 17:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38451 * 119.82373 * 2 1 4 4 C 1.37850 * 120.17227 * 180.02562 * 3 2 1 5 5 C 1.39904 * 119.82692 * 359.97438 * 4 3 2 6 6 C 1.47400 * 120.17467 * 179.97438 * 5 4 3 7 7 O 1.21351 * 119.99916 * 5.16118 * 6 5 4 8 8 C 1.49300 * 119.99912 * 185.16114 * 6 5 4 9 9 O 1.21368 * 119.99534 * 275.60739 * 8 6 5 10 10 N 1.34772 * 119.99865 * 95.60631 * 8 6 5 11 11 C 1.46972 * 120.59354 * 185.07792 * 10 8 6 12 12 C 1.53370 * 108.63326 * 235.25157 * 11 10 8 13 13 N 1.46968 * 108.63251 * 310.56812 * 12 11 10 14 14 C 1.36933 * 120.59532 * 235.20382 * 13 12 11 15 15 H 1.08001 * 119.99701 * 148.06952 * 14 13 12 16 16 C 1.38812 * 120.00072 * 327.79699 * 14 13 12 17 17 N 1.31614 * 119.99872 * 349.40793 * 16 14 13 18 18 Si 1.86801 * 119.99755 * 169.40591 * 16 14 13 19 19 H 1.48500 * 109.46989 * 59.99825 * 18 16 14 20 20 H 1.48498 * 109.46953 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47099 * 299.99827 * 18 16 14 22 22 C 1.46969 * 118.80937 * 55.48385 * 13 12 11 23 23 C 1.46960 * 120.59647 * 5.09656 * 10 8 6 24 24 C 1.39912 * 119.65235 * 0.25717 * 5 4 3 25 25 C 1.37855 * 119.82371 * 359.46558 * 24 5 4 26 26 H 1.08995 * 109.47237 * 90.00514 * 1 2 3 27 27 H 1.09007 * 109.46953 * 210.00421 * 1 2 3 28 28 H 1.08996 * 109.47244 * 330.00237 * 1 2 3 29 29 H 1.08002 * 119.91306 * 359.97374 * 3 2 1 30 30 H 1.08006 * 120.08297 * 180.02562 * 4 3 2 31 31 H 1.08996 * 109.60876 * 115.49785 * 11 10 8 32 32 H 1.09000 * 109.74671 * 355.07598 * 11 10 8 33 33 H 1.08998 * 109.60553 * 190.83293 * 12 11 10 34 34 H 1.08994 * 109.75357 * 70.40121 * 12 11 10 35 35 H 0.96998 * 119.99562 * 180.02562 * 17 16 14 36 36 H 1.09008 * 109.60835 * 64.26308 * 22 13 12 37 37 H 1.08993 * 109.61102 * 184.77484 * 22 13 12 38 38 H 1.08995 * 109.61227 * 244.49574 * 23 10 8 39 39 H 1.08998 * 109.60983 * 4.83770 * 23 10 8 40 40 H 1.08007 * 120.08785 * 179.74820 * 24 5 4 41 41 H 1.07996 * 119.91776 * 180.27332 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2011 0.0000 4 6 3.5740 1.2095 -0.0005 5 6 4.2772 0.0001 -0.0005 6 6 5.7512 0.0001 -0.0017 7 8 6.3580 1.0468 0.0919 8 6 6.4976 -1.2877 -0.1180 9 8 6.7128 -1.9558 0.8721 10 7 6.9324 -1.7081 -1.3224 11 6 7.5699 -3.0241 -1.4698 12 6 8.9471 -2.8317 -2.1169 13 7 8.7925 -1.9824 -3.3063 14 6 9.2351 -2.4093 -4.5298 15 1 8.7192 -2.1026 -5.4277 16 6 10.3502 -3.2314 -4.6164 17 7 11.1036 -3.4322 -3.5561 18 14 10.7813 -4.0528 -6.2378 19 1 11.0208 -3.0133 -7.2709 20 1 12.0073 -4.8730 -6.0666 21 1 9.6581 -4.9254 -6.6647 22 6 8.1600 -0.6641 -3.1579 23 6 6.7778 -0.8588 -2.5117 24 6 3.5740 -1.2095 -0.0054 25 6 2.1955 -1.2011 0.0009 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6512 2.1340 -0.0004 30 1 4.1097 2.1474 -0.0001 31 1 6.9531 -3.6604 -2.1045 32 1 7.6874 -3.4882 -0.4906 33 1 9.3523 -3.8004 -2.4094 34 1 9.6226 -2.3511 -1.4094 35 1 11.8830 -4.0064 -3.6167 36 1 8.7785 -0.0312 -2.5213 37 1 8.0454 -0.2009 -4.1378 38 1 6.1047 -1.3409 -3.2205 39 1 6.3697 0.1088 -2.2197 40 1 4.1098 -2.1473 -0.0096 41 1 1.6512 -2.1339 0.0016 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266731542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:00 Heat of formation + Delta-G solvation = -11.857754 kcal Electronic energy + Delta-G solvation = -24410.209559 eV Core-core repulsion = 20870.198835 eV Total energy + Delta-G solvation = -3540.010724 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75763 -39.25235 -38.17674 -36.86541 -33.98957 -33.22364 -31.35219 -31.23137 -30.48618 -28.36506 -27.12076 -25.02687 -23.53488 -22.91954 -22.80426 -21.68361 -20.21740 -18.79145 -17.76426 -17.05403 -16.36631 -16.02380 -15.56541 -15.20049 -14.89779 -14.75111 -14.38379 -14.10763 -13.93089 -13.80882 -13.73471 -13.62416 -13.36866 -13.31529 -12.59219 -12.45265 -12.21825 -11.99831 -11.82333 -11.35187 -11.22683 -11.20741 -10.88050 -10.79345 -10.59830 -10.28414 -10.04988 -9.90592 -9.27639 -9.23093 -9.01587 -8.63268 -8.42618 -6.70698 -5.87218 -3.38970 0.33182 1.11534 2.00818 2.54792 2.96819 3.33330 3.39069 3.39683 3.49991 4.03211 4.41141 4.43293 4.50881 4.68863 4.75879 4.97909 5.09815 5.16613 5.22163 5.31267 5.34908 5.40599 5.64474 5.67285 5.69150 5.72484 5.81111 6.00102 6.01172 6.08788 6.20327 6.21746 6.29013 6.42516 6.59478 6.63286 6.77376 7.09221 7.19119 7.51277 7.61090 7.69619 8.14573 8.36051 9.09885 9.70032 10.28870 11.20151 Molecular weight = 302.14amu Principal moments of inertia in cm(-1) A = 0.025137 B = 0.003357 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.646132 B = 8339.006553 C = 8589.343110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.052 4.052 3 C -0.136 4.136 4 C -0.050 4.050 5 C -0.170 4.170 6 C 0.401 3.599 7 O -0.421 6.421 8 C 0.486 3.514 9 O -0.529 6.529 10 N -0.577 5.577 11 C 0.083 3.917 12 C 0.159 3.841 13 N -0.590 5.590 14 C -0.261 4.261 15 H 0.067 0.933 16 C 0.007 3.993 17 N -0.903 5.903 18 Si 0.908 3.092 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.132 3.868 23 C 0.087 3.913 24 C -0.054 4.054 25 C -0.133 4.133 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.026 0.974 35 H 0.257 0.743 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.132 0.868 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.294 5.942 5.418 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.052 4.052 3 C -0.154 4.154 4 C -0.069 4.069 5 C -0.171 4.171 6 C 0.273 3.727 7 O -0.293 6.293 8 C 0.270 3.730 9 O -0.407 6.407 10 N -0.309 5.309 11 C -0.039 4.039 12 C 0.032 3.968 13 N -0.313 5.313 14 C -0.390 4.390 15 H 0.084 0.916 16 C -0.192 4.192 17 N -0.546 5.546 18 Si 0.738 3.262 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.208 1.208 22 C 0.004 3.996 23 C -0.038 4.038 24 C -0.072 4.072 25 C -0.151 4.151 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.148 0.852 30 H 0.154 0.846 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.150 0.850 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.653 6.039 5.971 21.409 hybrid contribution 0.393 -0.439 -0.816 1.006 sum -19.260 5.600 5.155 20.709 Atomic orbital electron populations 1.20892 0.90732 1.03212 1.02817 1.20277 0.96459 0.93156 0.95303 1.21014 0.93728 0.97907 1.02755 1.21387 0.94117 0.97475 0.93891 1.20245 0.93200 0.94898 1.08758 1.22533 0.89218 0.89098 0.71854 1.90612 1.71171 1.33099 1.34428 1.20637 0.80899 0.86957 0.84485 1.90771 1.58186 1.55795 1.35986 1.48168 1.56560 1.19293 1.06926 1.22686 0.97675 0.81923 1.01650 1.21214 0.89685 0.98370 0.87508 1.43972 1.69447 1.12177 1.05724 1.19135 1.07010 1.28198 0.84669 0.91565 1.25237 0.95229 1.01431 0.97321 1.69944 1.16246 1.39836 1.28566 0.86292 0.77558 0.79257 0.83124 1.20770 1.21538 1.20842 1.21360 0.90315 0.89403 0.98498 1.22566 1.01278 0.93049 0.86912 1.21499 0.94517 0.97411 0.93811 1.21022 0.93739 0.97987 1.02351 0.90541 0.91107 0.91159 0.85170 0.84570 0.91451 0.89809 0.87886 0.95607 0.93266 0.95457 0.91123 0.90792 0.91534 0.84984 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.00 36.00 0.36 -0.30 16 2 C -0.05 -0.44 5.89 -104.47 -0.62 -1.05 16 3 C -0.14 -1.21 9.68 -39.64 -0.38 -1.59 16 4 C -0.05 -0.56 9.60 -39.10 -0.38 -0.94 16 5 C -0.17 -2.25 5.88 -104.92 -0.62 -2.86 16 6 C 0.40 6.56 5.03 -31.25 -0.16 6.40 16 7 O -0.42 -7.58 16.89 5.50 0.09 -7.49 16 8 C 0.49 9.01 6.11 -11.66 -0.07 8.94 16 9 O -0.53 -11.07 16.52 5.48 0.09 -10.98 16 10 N -0.58 -10.70 2.95 -172.78 -0.51 -11.20 16 11 C 0.08 1.64 6.59 -3.59 -0.02 1.61 16 12 C 0.16 3.76 5.45 -3.60 -0.02 3.74 16 13 N -0.59 -14.42 2.95 -171.76 -0.51 -14.93 16 14 C -0.26 -6.87 9.57 -15.06 -0.14 -7.02 16 15 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 16 C 0.01 0.19 5.05 -17.43 -0.09 0.11 16 17 N -0.90 -25.63 11.07 55.49 0.61 -25.01 16 18 Si 0.91 21.02 29.57 -169.99 -5.03 15.99 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.13 2.70 6.70 -3.36 -0.02 2.68 16 23 C 0.09 1.48 6.51 -3.37 -0.02 1.46 16 24 C -0.05 -0.64 9.47 -39.10 -0.37 -1.01 16 25 C -0.13 -1.26 9.68 -39.64 -0.38 -1.64 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 28 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 29 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.14 1.42 7.66 -52.48 -0.40 1.02 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.62 7.00 -51.93 -0.36 1.26 16 33 H 0.10 2.66 6.08 -51.93 -0.32 2.35 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.03 6.19 -51.93 -0.32 0.70 16 40 H 0.13 1.62 7.15 -52.48 -0.38 1.25 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 343.64 15.07 5.18 5.18 Total: -1.00 -31.62 343.64 -8.53 -40.15 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.54 Total: -0.24 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -2.93 Total: 8.53 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.40 Total: -51.15 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.18 Total: -18.47 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.62 -8.53 -40.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266731542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.292 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds