Wall clock time and date at job start Fri Apr 10 2020 17:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50702 * 109.47555 * 240.00330 * 2 1 3 5 5 H 1.07993 * 120.00076 * 240.00235 * 4 2 1 6 6 C 1.37879 * 119.99640 * 59.99082 * 4 2 1 7 7 N 1.31510 * 120.00292 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99687 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46955 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46857 * 120.00135 * 8 6 4 11 11 H 1.48494 * 109.47369 * 240.00824 * 8 6 4 12 12 N 1.46496 * 109.47436 * 119.99610 * 2 1 3 13 13 C 1.46504 * 119.99635 * 60.00542 * 12 2 1 14 14 S 1.65600 * 120.00437 * 240.00502 * 12 2 1 15 15 O 1.42097 * 106.39860 * 336.45501 * 14 12 2 16 16 O 1.42102 * 106.40043 * 203.54323 * 14 12 2 17 17 N 1.65599 * 107.21735 * 90.00036 * 14 12 2 18 18 C 1.46499 * 120.00012 * 65.00259 * 17 14 12 19 19 C 1.53000 * 109.46840 * 165.00017 * 18 17 14 20 20 N 1.46499 * 109.46840 * 179.97438 * 19 18 17 21 21 C 1.36881 * 126.40136 * 89.99703 * 20 19 18 22 22 C 1.34671 * 106.82076 * 179.97438 * 21 20 19 23 23 N 1.34127 * 108.02129 * 0.02562 * 22 21 20 24 24 C 1.30511 * 109.25181 * 359.72172 * 23 22 21 25 25 H 1.09001 * 109.47111 * 299.99900 * 1 2 3 26 26 H 1.08999 * 109.46908 * 59.99888 * 1 2 3 27 27 H 1.08998 * 109.46653 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99867 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46891 * 270.00056 * 13 12 2 30 30 H 1.09001 * 109.47292 * 29.99884 * 13 12 2 31 31 H 1.09001 * 109.47185 * 149.99877 * 13 12 2 32 32 H 0.97001 * 119.99797 * 244.99459 * 17 14 12 33 33 H 1.09002 * 109.47391 * 44.99686 * 18 17 14 34 34 H 1.09001 * 109.46813 * 284.99743 * 18 17 14 35 35 H 1.09001 * 109.47194 * 299.99493 * 19 18 17 36 36 H 1.08992 * 109.47399 * 59.99666 * 19 18 17 37 37 H 1.08002 * 126.58719 * 359.96564 * 21 20 19 38 38 H 1.07999 * 125.99048 * 180.02562 * 22 21 20 39 39 H 1.07995 * 125.64679 * 180.28977 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3215 -1.1201 -4.0080 9 1 3.1457 -2.2874 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1872 -4.8165 12 7 2.0184 -0.6905 1.1962 13 6 1.6646 -2.0931 1.4280 14 16 2.9704 0.1143 2.2863 15 8 3.5794 1.1830 1.5748 16 8 3.7119 -0.8788 2.9814 17 7 1.9606 0.8091 3.3998 18 6 1.1510 -0.0353 4.2817 19 6 0.6086 0.8075 5.4378 20 7 -0.2015 -0.0367 6.3193 21 6 0.2454 -0.7439 7.4027 22 6 -0.8235 -1.3766 7.9230 23 7 -1.8939 -1.0648 7.1773 24 6 -1.5298 -0.2581 6.2181 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 0.7093 1.1617 -3.4844 29 1 0.7377 -2.1444 1.9993 30 1 1.5297 -2.5968 0.4708 31 1 2.4631 -2.5818 1.9863 32 1 1.9054 1.7751 3.4682 33 1 1.7670 -0.8424 4.6782 34 1 0.3189 -0.4567 3.7177 35 1 1.4408 1.2290 6.0018 36 1 -0.0073 1.6146 5.0413 37 1 1.2603 -0.7863 7.7697 38 1 -0.8196 -2.0220 8.7889 39 1 -2.1824 0.1611 5.4666 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282326713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:18 Heat of formation + Delta-G solvation = -7.897159 kcal Electronic energy + Delta-G solvation = -23191.276296 eV Core-core repulsion = 19683.340924 eV Total energy + Delta-G solvation = -3507.935372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.19254 -36.90334 -36.43823 -36.18530 -35.36848 -33.41968 -32.64479 -29.67329 -29.18270 -28.32494 -25.59778 -25.23626 -23.65787 -21.50775 -21.16428 -20.85283 -19.10443 -17.77093 -17.11335 -16.94538 -16.68865 -16.00559 -15.46569 -15.19066 -14.81820 -14.35835 -14.16631 -14.03307 -13.52151 -13.43632 -13.24186 -12.82092 -12.71424 -12.18838 -12.10692 -11.92988 -11.70502 -11.58669 -11.43601 -11.29368 -10.98737 -10.88843 -10.52269 -10.29228 -10.15731 -10.12926 -9.88698 -9.55954 -9.33934 -8.69795 -8.51524 -8.07715 -6.13479 -4.20112 1.02733 1.87373 2.50389 3.03064 3.24221 3.32585 3.35621 3.40747 3.96210 4.29203 4.35450 4.36241 4.57573 4.69558 4.83559 4.89089 5.18500 5.20661 5.29179 5.33290 5.53335 5.59489 5.75254 6.01076 6.06547 6.26370 6.55164 6.58737 6.68170 6.76053 6.88933 6.95807 6.98760 7.37902 7.55561 7.72038 7.90524 7.97786 8.20470 8.82179 9.46058 10.92290 Molecular weight = 302.12amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.003819 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.875363 B = 7330.886433 C = 7812.179545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.522 4.522 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.987 5.987 13 C 0.095 3.905 14 S 2.780 3.220 15 O -0.970 6.970 16 O -0.995 6.995 17 N -1.133 6.133 18 C 0.109 3.891 19 C 0.099 3.901 20 N -0.457 5.457 21 C -0.055 4.055 22 C -0.032 4.032 23 N -0.497 5.497 24 C 0.185 3.815 25 H 0.009 0.991 26 H 0.092 0.908 27 H 0.033 0.967 28 H 0.263 0.737 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.413 0.587 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.174 0.826 38 H 0.169 0.831 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 0.018 16.034 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.561 4.561 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.830 5.830 13 C -0.052 4.052 14 S 2.789 3.211 15 O -0.953 6.953 16 O -0.978 6.978 17 N -0.891 5.891 18 C -0.019 4.019 19 C -0.025 4.025 20 N -0.141 5.141 21 C -0.188 4.188 22 C -0.179 4.179 23 N -0.215 5.215 24 C -0.098 4.098 25 H 0.028 0.972 26 H 0.111 0.889 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.246 0.754 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.192 0.808 38 H 0.186 0.814 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.440 -0.224 15.932 16.119 hybrid contribution 0.625 0.275 -1.042 1.246 sum -1.815 0.051 14.889 15.000 Atomic orbital electron populations 1.22109 0.98163 0.99785 1.00510 1.18759 0.91323 0.93016 0.80445 0.92339 1.21361 1.31653 1.13091 0.90011 0.91815 1.24908 0.94899 0.94999 0.99051 1.69860 1.36508 1.22681 1.23761 0.86433 0.78621 0.79676 0.82636 1.19709 1.20956 1.20866 1.57642 1.69878 1.19845 1.35599 1.21341 0.98638 0.82337 1.02856 1.01958 0.73554 0.73200 0.72414 1.93630 1.74123 1.56001 1.71593 1.93534 1.69095 1.60636 1.74542 1.56233 1.62456 1.17304 1.53139 1.21449 0.95996 0.93575 0.90921 1.22071 0.96277 0.92943 0.91218 1.45489 1.09089 1.36652 1.22878 1.22806 1.01335 1.01892 0.92778 1.22312 0.88591 1.04592 1.02421 1.70316 1.30523 1.14533 1.06112 1.25105 0.82714 1.00709 1.01236 0.97204 0.88902 0.94804 0.92701 0.94565 0.89635 0.91884 0.75405 0.89869 0.90852 0.88188 0.87896 0.80846 0.81417 0.77808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.97 37.16 0.33 -2.82 16 2 C 0.27 6.25 2.62 -69.08 -0.18 6.07 16 3 H 0.06 1.51 6.91 -51.92 -0.36 1.16 16 4 C -0.52 -13.62 7.99 -34.44 -0.28 -13.90 16 5 H 0.06 1.66 7.33 -52.49 -0.38 1.28 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.14 11.32 55.43 0.63 -23.51 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.99 -19.21 3.12 -115.84 -0.36 -19.57 16 13 C 0.09 1.60 9.66 59.85 0.58 2.18 16 14 S 2.78 49.96 6.14 -107.50 -0.66 49.30 16 15 O -0.97 -21.16 16.70 -57.17 -0.95 -22.11 16 16 O -0.99 -19.23 16.21 -57.17 -0.93 -20.15 16 17 N -1.13 -13.91 6.05 -10.61 -0.06 -13.98 16 18 C 0.11 1.11 6.57 -4.04 -0.03 1.08 16 19 C 0.10 0.73 6.29 -4.04 -0.03 0.71 16 20 N -0.46 -4.18 2.75 -118.58 -0.33 -4.50 16 21 C -0.06 -0.51 11.58 -16.56 -0.19 -0.70 16 22 C -0.03 -0.33 11.87 -17.81 -0.21 -0.55 16 23 N -0.50 -6.22 11.25 -14.66 -0.16 -6.38 16 24 C 0.18 1.89 12.56 -90.37 -1.14 0.75 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 27 H 0.03 0.69 7.67 -51.93 -0.40 0.30 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.54 7.02 -51.93 -0.36 1.17 16 31 H 0.06 1.01 7.02 -51.93 -0.36 0.64 16 32 H 0.41 4.11 8.65 -34.47 -0.30 3.81 16 33 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.21 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -33.78 339.45 -9.37 -43.15 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.40 Total: 2.54 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.23 Total: -5.59 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -0.29 Total: -67.94 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.88 Total: -42.26 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 49.96 SS G_CDS: -0.66 Total: 49.30 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.78 -9.37 -43.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282326713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.253 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds