Wall clock time and date at job start Fri Apr 10 2020 17:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50702 * 109.47555 * 240.00330 * 2 1 3 5 5 H 1.07993 * 120.00076 * 240.00235 * 4 2 1 6 6 C 1.37879 * 119.99640 * 59.99082 * 4 2 1 7 7 N 1.31510 * 120.00292 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99687 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46955 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46857 * 120.00135 * 8 6 4 11 11 H 1.48494 * 109.47369 * 240.00824 * 8 6 4 12 12 N 1.46496 * 109.47436 * 119.99610 * 2 1 3 13 13 C 1.46504 * 119.99635 * 60.00542 * 12 2 1 14 14 S 1.65600 * 120.00437 * 240.00502 * 12 2 1 15 15 O 1.42097 * 106.39860 * 336.45501 * 14 12 2 16 16 O 1.42102 * 106.40043 * 203.54323 * 14 12 2 17 17 N 1.65599 * 107.21735 * 90.00036 * 14 12 2 18 18 C 1.46499 * 120.00012 * 65.00259 * 17 14 12 19 19 C 1.53000 * 109.46840 * 165.00017 * 18 17 14 20 20 N 1.46499 * 109.46840 * 179.97438 * 19 18 17 21 21 C 1.36881 * 126.40136 * 89.99703 * 20 19 18 22 22 C 1.34671 * 106.82076 * 179.97438 * 21 20 19 23 23 N 1.34127 * 108.02129 * 0.02562 * 22 21 20 24 24 C 1.30511 * 109.25181 * 359.72172 * 23 22 21 25 25 H 1.09001 * 109.47111 * 299.99900 * 1 2 3 26 26 H 1.08999 * 109.46908 * 59.99888 * 1 2 3 27 27 H 1.08998 * 109.46653 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99867 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46891 * 270.00056 * 13 12 2 30 30 H 1.09001 * 109.47292 * 29.99884 * 13 12 2 31 31 H 1.09001 * 109.47185 * 149.99877 * 13 12 2 32 32 H 0.97001 * 119.99797 * 244.99459 * 17 14 12 33 33 H 1.09002 * 109.47391 * 44.99686 * 18 17 14 34 34 H 1.09001 * 109.46813 * 284.99743 * 18 17 14 35 35 H 1.09001 * 109.47194 * 299.99493 * 19 18 17 36 36 H 1.08992 * 109.47399 * 59.99666 * 19 18 17 37 37 H 1.08002 * 126.58719 * 359.96564 * 21 20 19 38 38 H 1.07999 * 125.99048 * 180.02562 * 22 21 20 39 39 H 1.07995 * 125.64679 * 180.28977 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3215 -1.1201 -4.0080 9 1 3.1457 -2.2874 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1872 -4.8165 12 7 2.0184 -0.6905 1.1962 13 6 1.6646 -2.0931 1.4280 14 16 2.9704 0.1143 2.2863 15 8 3.5794 1.1830 1.5748 16 8 3.7119 -0.8788 2.9814 17 7 1.9606 0.8091 3.3998 18 6 1.1510 -0.0353 4.2817 19 6 0.6086 0.8075 5.4378 20 7 -0.2015 -0.0367 6.3193 21 6 0.2454 -0.7439 7.4027 22 6 -0.8235 -1.3766 7.9230 23 7 -1.8939 -1.0648 7.1773 24 6 -1.5298 -0.2581 6.2181 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 0.7093 1.1617 -3.4844 29 1 0.7377 -2.1444 1.9993 30 1 1.5297 -2.5968 0.4708 31 1 2.4631 -2.5818 1.9863 32 1 1.9054 1.7751 3.4682 33 1 1.7670 -0.8424 4.6782 34 1 0.3189 -0.4567 3.7177 35 1 1.4408 1.2290 6.0018 36 1 -0.0073 1.6146 5.0413 37 1 1.2603 -0.7863 7.7697 38 1 -0.8196 -2.0220 8.7889 39 1 -2.1824 0.1611 5.4666 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282326713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:18 Heat of formation + Delta-G solvation = -31.945566 kcal Electronic energy + Delta-G solvation = -23192.319113 eV Core-core repulsion = 19683.340924 eV Total energy + Delta-G solvation = -3508.978189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.89688 -38.38626 -37.91722 -37.29029 -36.91990 -34.52955 -34.26630 -30.92298 -30.38865 -29.12460 -27.23650 -27.00987 -24.44667 -22.64172 -22.22692 -21.78952 -20.40094 -19.03245 -18.61029 -18.26948 -17.91222 -17.37311 -16.87257 -16.22449 -16.02869 -15.52930 -15.13972 -14.99351 -14.79849 -14.73792 -14.37654 -14.10788 -13.80273 -13.59509 -13.47820 -13.23091 -13.13890 -13.02373 -12.94081 -12.80616 -12.72269 -12.62081 -12.21095 -12.13129 -11.91789 -11.16384 -10.91976 -10.71329 -10.53565 -10.48441 -9.68018 -9.40856 -8.12454 -6.25183 -0.37681 1.16836 1.41099 1.44552 1.54205 1.74022 2.15353 2.27546 2.43306 2.63244 3.16514 3.40070 3.67839 3.74537 3.94448 4.04885 4.13046 4.26966 4.39307 4.49313 4.66757 4.74460 4.75351 4.84654 4.85365 5.01701 5.04768 5.16397 5.25360 5.37456 5.61697 5.67610 5.86341 5.87263 6.03110 6.18028 6.30411 6.30665 6.82546 7.18417 7.43769 8.91713 Molecular weight = 302.12amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.003819 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.875363 B = 7330.886433 C = 7812.179545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H 0.029 0.971 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.284 1.284 12 N -0.995 5.995 13 C 0.092 3.908 14 S 2.799 3.201 15 O -1.013 7.013 16 O -1.009 7.009 17 N -1.113 6.113 18 C 0.104 3.896 19 C 0.105 3.895 20 N -0.456 5.456 21 C -0.052 4.052 22 C -0.057 4.057 23 N -0.539 5.539 24 C 0.178 3.822 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.264 0.736 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.427 0.573 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.199 0.801 38 H 0.180 0.820 39 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 -0.055 17.062 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.046 0.954 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.201 1.201 11 H -0.210 1.210 12 N -0.837 5.837 13 C -0.054 4.054 14 S 2.808 3.192 15 O -0.997 6.997 16 O -0.992 6.992 17 N -0.877 5.877 18 C -0.023 4.023 19 C -0.019 4.019 20 N -0.140 5.140 21 C -0.185 4.185 22 C -0.204 4.204 23 N -0.257 5.257 24 C -0.105 4.105 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.263 0.737 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.216 0.784 38 H 0.197 0.803 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.712 -0.308 16.968 17.186 hybrid contribution 0.718 0.287 -1.259 1.478 sum -1.994 -0.021 15.709 15.835 Atomic orbital electron populations 1.21896 0.96710 1.00109 1.00576 1.18414 0.92289 0.91435 0.81025 0.95351 1.21700 1.31551 1.13043 0.91574 0.92560 1.25593 0.95236 0.95715 1.01552 1.69966 1.37279 1.23610 1.24266 0.85589 0.78242 0.78621 0.79664 1.19519 1.20131 1.21034 1.57518 1.69969 1.20966 1.35274 1.21474 1.00394 0.80890 1.02641 1.01125 0.73455 0.72297 0.72315 1.93570 1.75667 1.57346 1.73107 1.93514 1.69844 1.61269 1.74584 1.55613 1.61969 1.18254 1.51888 1.21617 0.95547 0.93657 0.91501 1.22136 0.97147 0.92423 0.90207 1.45573 1.08888 1.36635 1.22862 1.23226 1.02069 1.00853 0.92370 1.22672 0.88847 1.05621 1.03227 1.70277 1.31948 1.16018 1.07499 1.25572 0.83502 1.00224 1.01172 0.94209 0.91685 0.94229 0.92657 0.91562 0.91110 0.91079 0.73664 0.90448 0.90657 0.86286 0.85602 0.78392 0.80317 0.75625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.97 71.98 0.65 -4.98 16 2 C 0.27 12.70 2.62 44.25 0.12 12.82 16 3 H 0.03 1.50 6.91 -2.38 -0.02 1.49 16 4 C -0.54 -28.34 7.99 25.60 0.20 -28.14 16 5 H 0.06 2.96 7.33 -2.91 -0.02 2.94 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -49.88 11.32 21.45 0.24 -49.63 16 8 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 N -1.00 -37.83 3.12 -520.42 -1.62 -39.45 16 13 C 0.09 2.96 9.66 127.77 1.23 4.19 16 14 S 2.80 97.67 6.14 -56.49 -0.35 97.32 16 15 O -1.01 -44.29 16.70 -128.00 -2.14 -46.42 16 16 O -1.01 -37.65 16.21 -128.00 -2.07 -39.73 16 17 N -1.11 -24.59 6.05 -187.49 -1.14 -25.73 16 18 C 0.10 1.80 6.57 86.38 0.57 2.37 16 19 C 0.10 1.15 6.29 86.38 0.54 1.70 16 20 N -0.46 -7.00 2.75 -529.07 -1.46 -8.46 16 21 C -0.05 -0.84 11.58 83.09 0.96 0.13 16 22 C -0.06 -1.14 11.87 83.52 0.99 -0.15 16 23 N -0.54 -12.88 11.25 -200.31 -2.25 -15.13 16 24 C 0.18 3.25 12.56 180.26 2.26 5.51 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 27 H 0.04 1.58 7.67 -2.39 -0.02 1.56 16 28 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 2.49 7.02 -2.39 -0.02 2.47 16 31 H 0.07 2.16 7.02 -2.39 -0.02 2.15 16 32 H 0.43 7.33 8.65 -96.75 -0.84 6.49 16 33 H 0.08 1.48 7.75 -2.39 -0.02 1.46 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.20 1.99 8.06 -2.91 -0.02 1.96 16 38 H 0.18 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.23 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -73.29 339.45 -0.56 -73.85 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.22 Total: 13.94 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 7.98 Total: -5.08 kcal Atomic # 7 Polarization: -132.18 SS G_CDS: -6.23 Total: -138.41 kcal Atomic # 8 Polarization: -81.94 SS G_CDS: -4.21 Total: -86.15 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 97.67 SS G_CDS: -0.35 Total: 97.32 kcal Total: -73.29 -0.56 -73.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282326713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.907 kcal (2) G-P(sol) polarization free energy of solvation -73.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds