Wall clock time and date at job start Fri Apr 10 2020 17:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.50700 * 109.47412 * 164.99847 * 18 17 14 20 20 N 1.30496 * 125.64906 * 269.69185 * 19 18 17 21 21 C 1.34132 * 109.25526 * 179.89250 * 20 19 18 22 22 C 1.34671 * 108.01879 * 0.37060 * 21 20 19 23 23 N 1.35048 * 125.64996 * 90.00006 * 19 18 17 24 24 C 1.46502 * 126.39821 * 359.97438 * 23 19 18 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 30 30 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 31 31 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 32 32 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 33 33 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 34 34 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 35 35 H 1.08003 * 125.98848 * 180.11638 * 21 20 19 36 36 H 1.08003 * 126.58884 * 179.74953 * 22 21 20 37 37 H 1.08999 * 109.46671 * 90.00281 * 24 23 19 38 38 H 1.08995 * 109.47367 * 210.00110 * 24 23 19 39 39 H 1.08997 * 109.47073 * 330.01117 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6167 0.7951 5.4204 20 7 1.2072 0.9797 6.5694 21 6 0.4451 1.7741 7.3358 22 6 -0.6634 2.0871 6.6381 23 7 -0.5551 1.4664 5.4230 24 6 -1.5287 1.5199 4.3296 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7088 1.1611 -3.4845 29 1 2.4158 -2.7376 0.9718 30 1 1.6238 -2.2851 2.5003 31 1 0.6905 -2.3002 0.9847 32 1 1.9053 1.7753 3.4681 33 1 0.3187 -0.4565 3.7178 34 1 1.7669 -0.8422 4.6782 35 1 0.6777 2.1016 8.3383 36 1 -1.4810 2.7082 6.9731 37 1 -2.2439 0.7048 4.4397 38 1 -2.0567 2.4730 4.3596 39 1 -1.0099 1.4217 3.3760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282334597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:21 Heat of formation + Delta-G solvation = -5.933756 kcal Electronic energy + Delta-G solvation = -23611.528652 eV Core-core repulsion = 20103.678419 eV Total energy + Delta-G solvation = -3507.850233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.23489 -36.70556 -36.23984 -35.27576 -35.22385 -34.13940 -32.61805 -29.95880 -29.15785 -27.28063 -25.78235 -25.55333 -25.16454 -21.54195 -20.87880 -20.18919 -18.87090 -17.57008 -17.23552 -16.79677 -16.34318 -16.07145 -15.48391 -15.05330 -14.88349 -14.33234 -13.81423 -13.51193 -13.39454 -13.30777 -13.07573 -13.00224 -12.82597 -12.72207 -12.06017 -11.76958 -11.56870 -11.47678 -11.39558 -11.27064 -11.00192 -10.83724 -10.53572 -10.34049 -10.10107 -10.05597 -9.76902 -9.48789 -9.29773 -8.62008 -8.48701 -8.03381 -6.11028 -4.17283 1.09484 1.86065 2.59454 2.95613 3.28636 3.33035 3.36699 3.56100 4.05665 4.22718 4.38024 4.52879 4.61887 4.90591 4.96874 5.05077 5.20846 5.21802 5.29308 5.33704 5.53167 5.62122 5.83170 6.07984 6.09870 6.32768 6.55805 6.59229 6.66701 6.71566 6.93345 6.95541 7.03697 7.41697 7.58311 7.74191 7.95842 7.98957 8.23176 8.84886 9.48767 10.94691 Molecular weight = 302.12amu Principal moments of inertia in cm(-1) A = 0.024152 B = 0.004368 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.037589 B = 6409.003831 C = 7003.857799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.107 3.893 14 S 2.780 3.220 15 O -0.990 6.990 16 O -0.970 6.970 17 N -1.129 6.129 18 C 0.210 3.790 19 C 0.197 3.803 20 N -0.474 5.474 21 C -0.031 4.031 22 C -0.054 4.054 23 N -0.451 5.451 24 C 0.064 3.936 25 H 0.093 0.907 26 H 0.034 0.966 27 H 0.008 0.992 28 H 0.264 0.736 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 0.936 14.361 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.833 5.833 13 C -0.040 4.040 14 S 2.789 3.211 15 O -0.973 6.973 16 O -0.954 6.954 17 N -0.888 5.888 18 C 0.082 3.918 19 C -0.066 4.066 20 N -0.193 5.193 21 C -0.180 4.180 22 C -0.188 4.188 23 N -0.134 5.134 24 C -0.078 4.078 25 H 0.112 0.888 26 H 0.053 0.947 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.246 0.754 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.188 0.812 36 H 0.192 0.808 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.946 0.556 14.299 15.907 hybrid contribution -1.146 0.445 -1.000 1.584 sum -8.091 1.001 13.299 15.599 Atomic orbital electron populations 1.22121 0.98370 0.99686 1.00439 1.18733 0.91183 0.93058 0.80544 0.92318 1.21297 1.31631 1.13043 0.90003 0.91931 1.24901 0.94934 0.94991 0.99008 1.69839 1.36558 1.22716 1.23901 0.86549 0.79422 0.79552 0.81838 1.21246 1.20122 1.20236 1.57737 1.70133 1.19778 1.35678 1.21192 1.01858 0.82148 0.98764 1.02001 0.73546 0.73243 0.72327 1.93552 1.68768 1.60618 1.74393 1.93624 1.73973 1.56052 1.71738 1.56337 1.62646 1.17462 1.52384 1.19387 0.95196 0.91183 0.86005 1.23098 0.85536 1.01217 0.96785 1.70284 1.29932 1.17208 1.01909 1.22352 0.92875 1.01797 1.00942 1.22752 1.03489 1.05598 0.86966 1.45363 1.17302 1.37207 1.13549 1.22191 0.92202 1.04086 0.89345 0.88850 0.94691 0.97343 0.92657 0.93049 0.93314 0.90914 0.75409 0.90291 0.87565 0.81214 0.80767 0.90133 0.89351 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.95 37.16 0.33 -2.72 16 2 C 0.27 6.23 2.62 -69.09 -0.18 6.05 16 3 H 0.06 1.53 6.91 -51.92 -0.36 1.17 16 4 C -0.52 -13.60 8.37 -34.44 -0.29 -13.89 16 5 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.10 11.32 55.43 0.63 -23.47 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.99 -19.40 3.12 -115.86 -0.36 -19.76 16 13 C 0.11 1.77 9.53 59.85 0.57 2.34 16 14 S 2.78 53.37 6.09 -107.50 -0.66 52.72 16 15 O -0.99 -20.49 16.68 -57.17 -0.95 -21.44 16 16 O -0.97 -22.40 16.70 -57.17 -0.95 -23.36 16 17 N -1.13 -16.79 6.05 -11.65 -0.07 -16.86 16 18 C 0.21 2.71 6.33 -5.19 -0.03 2.68 16 19 C 0.20 2.58 7.30 -155.41 -1.13 1.44 16 20 N -0.47 -6.95 11.25 -10.81 -0.12 -7.07 16 21 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 22 C -0.05 -0.52 11.58 -16.56 -0.19 -0.71 16 23 N -0.45 -4.72 3.15 -121.28 -0.38 -5.11 16 24 C 0.06 0.47 10.79 59.85 0.65 1.12 16 25 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 26 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 27 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.66 7.79 -51.93 -0.40 0.25 16 31 H 0.07 1.14 6.43 -51.93 -0.33 0.81 16 32 H 0.41 5.75 8.64 -34.47 -0.30 5.45 16 33 H 0.08 0.84 7.70 -51.93 -0.40 0.44 16 34 H 0.11 1.41 7.75 -51.93 -0.40 1.01 16 35 H 0.17 1.50 8.06 -52.48 -0.42 1.07 16 36 H 0.18 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.79 7.66 -51.93 -0.40 0.39 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -34.07 338.12 -8.71 -42.78 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.33 Total: 3.39 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.59 Total: -2.66 kcal Atomic # 7 Polarization: -71.96 SS G_CDS: -0.31 Total: -72.26 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -1.91 Total: -44.80 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 53.37 SS G_CDS: -0.66 Total: 52.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.07 -8.71 -42.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282334597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.851 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds